G113893


Basic Information

Item Value
gene id G113893
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 12018054 ~ 12018274 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU134462
GTATAATCACAAAACTTGATGTGTCTTCAAACCAcgccctgaatgtacccaagcAGTCTTGTGactgtgccaccttgtggtcaagaactgtaacaagtttcatttttttcttatatcatTTCAAGAATGTatgctaaattcacagttctttttttcctataatttcCTGGAGTATGCTGAAATGAATGCACACCAACATCtaaaattcaagtgtacttcct

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption
ko04966 Collecting duct acid secretion

RNA

RNA id representative length rna type GC content exon number start site end site
TU134462 True 221 lncRNA 0.36 1 12018054 12018274

Neighbor

gene id symbol gene type direction distance location
LOC113542750 LOC108268434,LOC108436714 coding downstream 474330 11481891 ~ 11543724 (-)
LOC113542810 zc4h2,LOC108269407,LOC108436709,LOC103036162 coding downstream 619158 11388502 ~ 11398896 (-)
asb12b asb12 coding downstream 646861 11368194 ~ 11371193 (-)
LOC113542731 NA coding downstream 918664 11091697 ~ 11099390 (-)
LOC113542771 tenm1 coding downstream 976640 10900021 ~ 11041414 (-)
hdac3 hdac3 coding upstream 7507 12025781 ~ 12063137 (-)
LOC117597734 NA coding upstream 279892 12298166 ~ 12310163 (-)
btk btk,LOC107554824 coding upstream 419565 12437839 ~ 12492799 (-)
atoh8 atoh8,LOC107677004,LOC107753212,LOC107571829 coding upstream 509217 12527491 ~ 12549293 (-)
spdl1 spdl1 coding upstream 563182 12581456 ~ 12662949 (-)
G113756 NA non-coding downstream 10559 12007293 ~ 12007495 (-)
G113715 NA non-coding downstream 51320 11966027 ~ 11966734 (-)
G113712 NA non-coding downstream 55312 11960139 ~ 11962742 (-)
G113691 NA non-coding downstream 120691 11897125 ~ 11897363 (-)
G113690 NA non-coding downstream 125326 11892521 ~ 11892728 (-)
G113889 NA non-coding upstream 3724 12021998 ~ 12057353 (-)
G113954 NA non-coding upstream 163091 12181365 ~ 12183096 (-)
G113972 NA non-coding upstream 239941 12258215 ~ 12263170 (-)
G113979 NA non-coding upstream 260548 12278822 ~ 12283054 (-)
G113985 NA non-coding upstream 273718 12291992 ~ 12292464 (-)
G113674 NA other downstream 160038 11818878 ~ 11858016 (-)
G113516 NA other downstream 405485 11611973 ~ 11612569 (-)
G113398 NA other downstream 658475 11359138 ~ 11359579 (-)
LOC113542749 LOC108269078 other downstream 692586 11258451 ~ 11325468 (-)
LOC113542827 slc25a53 other downstream 2044259 9965785 ~ 9973795 (-)
LOC117597634 LOC101884462,LOC101885893 other upstream 61250 12079524 ~ 12112216 (-)
LOC113542864 LOC108427892,LOC108268827,LOC107740141,LOC107593202,LOC106612226,LOC107554835 other upstream 151355 12169629 ~ 12174905 (-)
G113959 csnk1a1,LOC106604944 other upstream 303057 12321331 ~ 12368943 (-)
G114013 NA other upstream 405454 12423728 ~ 12424057 (-)
timm8a timm8a,LOC107742474,LOC107680336,LOC107593201 other upstream 482666 12500940 ~ 12504810 (-)

Expression


Co-expression Network