G113961


Basic Information

Item Value
gene id G113961
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 12377313 ~ 12377780 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU134537
ccagctgtagcacgcactattcgaggtaccaacacaTAGCCTGCACCTTTCGATCTGAGTAGgagtggcggatcataaaataccaaaagttcactcaggtactgtggcgcgagaccatttagtgctttataggtcaatagtagttttataatcaatacgaaatttgattaggagccaatgcagtgtggataagataggggtgatatggtcatatcttctgattctagtaaggattcttgctgctgcattctggactaactggagcttgtttatgcatctactggagcatccagacagtaaggcattacaataatccaacctagaggtaacaaaagcatgaactaatttttctgcaccGTGTAGtgatattatatttcttattttagcaatatttctgagatgaaagaaagcaatcctagtgatattatctacatgagcttcaaaagaaagactagagtcgataatcac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134537 True 468 lncRNA 0.39 1 12377313 12377780

Neighbor

gene id symbol gene type direction distance location
LOC117597734 NA coding downstream 67150 12298166 ~ 12310163 (-)
hdac3 hdac3 coding downstream 314176 12025781 ~ 12063137 (-)
LOC113542750 LOC108268434,LOC108436714 coding downstream 833589 11481891 ~ 11543724 (-)
LOC113542810 zc4h2,LOC108269407,LOC108436709,LOC103036162 coding downstream 978417 11388502 ~ 11398896 (-)
asb12b asb12 coding downstream 1006120 11368194 ~ 11371193 (-)
btk btk,LOC107554824 coding upstream 60059 12437839 ~ 12492799 (-)
atoh8 atoh8,LOC107677004,LOC107753212,LOC107571829 coding upstream 149711 12527491 ~ 12549293 (-)
spdl1 spdl1 coding upstream 203676 12581456 ~ 12662949 (-)
hspa9 hspa9,LOC106604950 coding upstream 483870 12861650 ~ 12904853 (-)
LOC113529411 hnrnpa0b,LOC108269291,LOC107593199,LOC107740138,LOC107680986,LOC107554845 coding upstream 684558 13062338 ~ 13063432 (-)
G113985 NA non-coding downstream 84849 12291992 ~ 12292464 (-)
G113979 NA non-coding downstream 94259 12278822 ~ 12283054 (-)
G113972 NA non-coding downstream 114143 12258215 ~ 12263170 (-)
G113954 NA non-coding downstream 194217 12181365 ~ 12183096 (-)
G113889 NA non-coding downstream 319960 12021998 ~ 12057353 (-)
G114001 NA non-coding upstream 1497 12379277 ~ 12379493 (-)
LOC117597691 NA non-coding upstream 123400 12501180 ~ 12503970 (-)
G114095 NA non-coding upstream 132090 12509870 ~ 12512353 (-)
G114096 NA non-coding upstream 135049 12512829 ~ 12514622 (-)
G114103 NA non-coding upstream 140875 12518655 ~ 12522672 (-)
G113959 csnk1a1,LOC106604944 other downstream 8370 12321331 ~ 12368943 (-)
LOC113542864 LOC108427892,LOC108268827,LOC107740141,LOC107593202,LOC106612226,LOC107554835 other downstream 202408 12169629 ~ 12174905 (-)
LOC117597634 LOC101884462,LOC101885893 other downstream 265097 12079524 ~ 12112216 (-)
G113674 NA other downstream 519297 11818878 ~ 11858016 (-)
G113516 NA other downstream 764744 11611973 ~ 11612569 (-)
G114013 NA other upstream 45948 12423728 ~ 12424057 (-)
timm8a timm8a,LOC107742474,LOC107680336,LOC107593201 other upstream 123160 12500940 ~ 12504810 (-)
G114097 NA other upstream 138578 12516358 ~ 12518194 (-)
G114215 NA other upstream 316991 12694771 ~ 12695509 (-)
fbxo38 fbxo38 other upstream 556777 12934557 ~ 13027955 (-)

Expression


Co-expression Network