G113972


Basic Information

Item Value
gene id G113972
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 12258215 ~ 12263170 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU134554
AAACCCCCAGTGCAGTAAGCAGGAACTACATCCTCAGTGGGTCAGAGAAGGGGAGCAGTGACATCCTCGCCAGAGCCAGGAGTCGGATTGGACACAAGAGACCTCGTCGGCCTTGGGTGTGGCTTGCGAGGCCTCCTCTTTGTCCTCTGGCTTGGGCATAACTTTGGAGGCTGTCTGGTCAACCTCAGGCTTGTGCTTAGCTAGCGGGGCCTCCCCGTTGGCCTCTGGCTTGAGCAAGTCTTGTGAGGCCACCCCATCATCCTCTGGCTTGAGCGTAGCTTGCGAGACCGCCCCATTGGCCTCTGGCTTGAGTGTGGCTTGCAAGACCATCCCATTGGCCTTCTGGCATGAGCTGGTCTGGAGAGGCCGCTCCATCGGCCTCTGGCATGAGCTAGTCTGGAGAGGCCACCCCGTTGGCCTCTGGCGTGAGCTGGTCTGGAGAGACCTacttgttaatgttaattaatgttaatgtagtCCAGCACCGCTTTCAGTGCTGACATGACATGCCTGTAGGGAGTTCTGGAGCATTTGGAGAATGCTGGCCTTAACAGAGACCACAGGCCTTAACAAATTGCATTCTGAGCCAGAAAAGGCTACATTATCTGGACCAGGGGATCAACACAGCCTGCGCCCTGAATTACAccatatggctaaaagtatatggacacctgatcacAACACCCATATGAGGGccttcccaaactgttgccactactggttccagtgaagggaactaaggggcctaacccaaacctgttccaccatgacaatgcccctgtgcacaaagtgaggtccaaccatggtttgccaaggttcgTATGGAAGAATTTGGGATTgaatgaattggaatgccaactgctccccaggcctgatcacctgacatcagtgacTGACCTCAGTTGTGGCTGAATGGTCAAATCttcacagccatgctccaaaatctagtggaatgcCTTCCCAGAAAGGTGGaggttattttaatgtattatatactgtataaagggggactaaatctggaatgggatgggaagcacatatgagtgttgtgttcaggtgtccacaaacttttgtatgtgtatataaagaGTGAATAGTGTAAATAATGTATCCATACTCAGAAATTACCAAGAACTCAAAGAATCAAGGTCTGGTCACTTATTTGGGGAAATACATGGCCAGTCAAACTGCTAAAATCAAAGTCAGTTTTGTCACAGGGCCCAGCTCAACAGTCTTTAATTTTACAGATCATAGACAACACCTCATGACATCGCGTACTCTGGAATACTACAAATACCGAAAGGATTTGCCTTGGTCACAGGTCATAAACCTTTCACTGATTAACTCCAAGGATCTGCACAATGCATCAGTACAATGCCAAAGGCTACTGATGAGACTGCTGAACGTGTGGTGCTACTGTAATATTGCATCCATTATTGACAGTAAGAGTGCACCACAACATTGAGGTTGCGAATTTTCGTACATACCATCAGGATGGCCAGAGCATATTGGGAAACCACATGCCAGATGCCACATGCCAACCACATGTCAGAGAGTATTCCCAGTCTGAACAAACTAAAGGCCACAGTGCAGAGACAGAGGAAACACTTTTATATGGGGTATACCATAACTCAGATAATGATCCCATCTAGATGCCAGATACCCTAGTAAGTTTAGGGAATAGTCCTCCAGCTCAGAGTAAAAATAGGCCGAAGTACTGACCCAGGCCAGGtaccaaaaaaaatcaagtaggAGACTGGAAAACTACAATCTGTGAGAGTAAGAGGTGACTAGGAGAATGTTGAAACAATCTAATTGAACTGActggtaaaatattttttctaataattAAAGTTTTAGTGGTGCAAGTTTCAGTAATTAATGTTTTAGTGGTTATGATAACACCTGTTTATTTGTTAGCTTAATTTGGAACCTAAAGATagtttgttaatattaaatattatgtaatacCATTAGTCATGAACAAGAAGAAATTTCACTGTACCAAAAAAGGATTGCATGGTGGTTGAATAAGAGCTCTGTAAAGGGGGAGACTGGTTCACATTGGTGCATCTCCATGATGCATACATACTTCCATTTTAGCATTGCTCCACCTTCTGGAGGTTCACCTTCCTGGGACAGGCATTCAAAATTCTCCCTTTATTTCTGTGCCCCTGTGAGACCTTTCTTTATCCAATCTTTTGAAACAAATATATGAAGTATACCAATGGCCCTGGATtgctgtttaaaatatttattcttcCAACATTACAAGTTTGCACACTGATGAATGtgcttcttcctcatgtcaaGGATTTGGTCAAAATGAGTTGTGAGCTTACTCCTAACAGTGGCTAGCATGTAGCGCTCTCATTGCGGTGGCCTGTGTTCGATCCCCAGTCAGGGAACCAACAGCAGCCCCTGGAGGGATGCACGAGCTaatgcactctcagtgccagttCCAAGCCCAgaaaatggggagggttgcgtcaggaacaAACATGAACAAATCATGCCAAACATGAAACCAAATTGGTACTGTTATTTAATTCTCCAGTTCCAtgacgattaaaaaaaaactgtcagatGTTGTAAACTTTGAGAATTATAGGCATTTCAGATGAAGTGATTAATTTGATGGAGGCAGAAATGGTAGCCAATGTCCTGTTCATCAGTAGGCTGTTATGCACACTtatgatcagccataacattaaaaacacttaCAGGTGAattgaataacactgattatttcattacaatggcacctgtcaaggggtgggatatattaggcagcaagtgaacagtcagttctcaaaggtgatgtgttggaagcagaaaaaagtGTAAGAATCTgaatgactttgacaagggccaaattgtgatggctagacaactgggtcagggcatctccaaaacagcaggtcttgtggggtgcttctggtatgcagtggttagtacctaacaaaagtggtccaaggaaggacaaccgctgaaccagtgacagggtcatgagcACCCAAGGTTCATTGATacgtgtggggagcgaaggctagcctgtctggtccaaccccacagaagagctactgtaagttaatgctggctatgataggaAGGTGTCAAAACACGCAGTGCATCGcggcttgctgcatatgggggctgtatagccacagacctgtcagagtgcccatgctgacccctggtATTGGTATTCCCTATTAgaagtggcctctttcagcaggataatgctccctgccatgctgcaaaaattgttcagaaatggggaacatgacaaagggttcaaggtgttgacttggcctccatattccccagatctcaatccgatggagcatctgtgggatgtgctggacaaacaagtccgatccatggaggccccacatCGCAACttgcaggacttaaaggatctgctgctaacatcttggtgccagattggTGGTGAGGAATGAGAGAAGCTTGGTGCCACCACAACACACCTTtacaggtcttgtggagtccatgccttaaCAGGTCAGACCTATTGTAGTGGCACAAGAGGGACCTacataatattaggcaggtgggtttaatgttatggctgatcaatgTATTACcatcaggtccataaatattagGACAGtcacacaattttcataaatttgCCTCTGTAAACCAGCACAATGGATTTGatatgaagcaatcaagatgtgatcgaagtgtagactttcagccttaattcaaggggtttaacaaaaatactgcattaactatttaggaattacagccatttattgcagagtccctccattttaaCAGGCTTAAAAGTAATGGgtcaattgactgataagcggtttcatggccaggtatgacctgtttccttgttatttcatgacaaattaaggagataaaaggtctagagttgattccaagcattgaatttgcatttggtagctgttcatgggaactctctcACTCTAAAGAtgtgtcaatgcaagtgaagaaggccatcattaggctgaaaaaacaaaacagacctatcagagagaacagcagaaactttagaagtggccaaatcaacaatttggtacattcttaaaaagaagtaatgcactggcgagctcagcaacaccaaaaggcctggaagaccacagaagataactaaagtggatgatcgctgAATTGTTTCTTTGTTGAAGTAAAACCCCTTCTAGCCAAATCAAGAACatgcccagttctggaacaagattaacttgtaccagaatgatgggtaGAGAAGAGtatagagaaggaaaggaagggctcatgatccaaagcataccacatcatctgtcaaacatgtggaggcagtggtATGGCATGGCCatatatggctgccaatggaactgggtcactggtgtttattgatgtgactgctaaCAGAAGTAGAAGgatgaatactgaagtgtattgAGCTATAATTTCTGTTCAGACGCagtcaaatgctacaaaactgataggacgatGCTTCATAGTACAGacggataatgacccaaaacatactgcaaaagcaacacaagggcttcttaaggcaaagaaattaaatgttcttaaatgtccaaaTGGACTCatcccaatagagcatgcttttcacttactgaagataaaactgaaggcagaaagacccacaaacaagcagcaactgaaggcagctgcagtaaaggcctggcaaagcatctcaagggcgGAAACTCAaaatttgatgatgtccatgaattccagatttcaggcagtcattgactgtgaaagatttgcatccaagtattaaaaataatcctaacatTTATGAATGTTGTTTGTCCAATTTCTTTTgggcctgtgaaaatggagggactctgcaaaaaaaaaagctgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134554 True 4884 lncRNA 0.44 2 12258215 12263170

Neighbor

gene id symbol gene type direction distance location
hdac3 hdac3 coding downstream 195078 12025781 ~ 12063137 (-)
LOC113542750 LOC108268434,LOC108436714 coding downstream 714491 11481891 ~ 11543724 (-)
LOC113542810 zc4h2,LOC108269407,LOC108436709,LOC103036162 coding downstream 859319 11388502 ~ 11398896 (-)
asb12b asb12 coding downstream 887022 11368194 ~ 11371193 (-)
LOC113542731 NA coding downstream 1158825 11091697 ~ 11099390 (-)
LOC117597734 NA coding upstream 34996 12298166 ~ 12310163 (-)
btk btk,LOC107554824 coding upstream 174669 12437839 ~ 12492799 (-)
atoh8 atoh8,LOC107677004,LOC107753212,LOC107571829 coding upstream 264321 12527491 ~ 12549293 (-)
spdl1 spdl1 coding upstream 318286 12581456 ~ 12662949 (-)
hspa9 hspa9,LOC106604950 coding upstream 598480 12861650 ~ 12904853 (-)
G113954 NA non-coding downstream 75119 12181365 ~ 12183096 (-)
G113889 NA non-coding downstream 200862 12021998 ~ 12057353 (-)
G113893 NA non-coding downstream 239941 12018054 ~ 12018274 (-)
G113756 NA non-coding downstream 250720 12007293 ~ 12007495 (-)
G113715 NA non-coding downstream 291481 11966027 ~ 11966734 (-)
G113979 NA non-coding upstream 15652 12278822 ~ 12283054 (-)
G113985 NA non-coding upstream 28822 12291992 ~ 12292464 (-)
G113961 NA non-coding upstream 114143 12377313 ~ 12377780 (-)
G114001 NA non-coding upstream 116107 12379277 ~ 12379493 (-)
LOC117597691 NA non-coding upstream 238010 12501180 ~ 12503970 (-)
LOC113542864 LOC108427892,LOC108268827,LOC107740141,LOC107593202,LOC106612226,LOC107554835 other downstream 83310 12169629 ~ 12174905 (-)
LOC117597634 LOC101884462,LOC101885893 other downstream 145999 12079524 ~ 12112216 (-)
G113674 NA other downstream 400199 11818878 ~ 11858016 (-)
G113516 NA other downstream 645646 11611973 ~ 11612569 (-)
G113398 NA other downstream 898636 11359138 ~ 11359579 (-)
G113959 csnk1a1,LOC106604944 other upstream 58161 12321331 ~ 12368943 (-)
G114013 NA other upstream 160558 12423728 ~ 12424057 (-)
timm8a timm8a,LOC107742474,LOC107680336,LOC107593201 other upstream 237770 12500940 ~ 12504810 (-)
G114097 NA other upstream 253188 12516358 ~ 12518194 (-)
G114215 NA other upstream 431601 12694771 ~ 12695509 (-)

Expression


Co-expression Network