XLOC_005365 (hcar1-4)


Basic Information

Item Value
gene id XLOC_005365
gene name hcar1-4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 25292876 ~ 25294769 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010277
gaaaaaaagacCTCGCCCTTTTTATTTCGTCCTCTTTCGTATAATCAGCATTTCGTATAGTCAAAATCCACATAGAAGATGTGAACAACACTACTTTCCGTTGTTTAAACCAAACAACAACTAATAACTTAATTAGAAGAAACGTAAAGATCACATGATGTTCCTGAACTGTTAGCCCACAGTGCTATCGTTGCCAAACGACAACTCCAGTTCCAGCCGCCTGGTTACAAGATCACACCGCTTCTCATAATGAGTAACATCACCTCCTGCATGGAACCTCACTCCTTTATTTCTTCCATTTTAAAGCCCATTTTCATATTGGAGTTAATTTTGGGGTTGCCTGGAAATGTGTTTGCTCTGTGGATTTTATTTTTCAAGTCTCCATGGAAAGCCTGCAATGTGTATTTCTTCAGCCTGGTAATAGCTGACCTCCTACTCCTCACTGGGATGCCTTTCCGCATCGATTATTTTTTTCGTGGTGAAGACTGGATATTTGGCGAATCCATTTGCCGCCTTGTTTTATATGTCATATCAGTAAACTCCTCAGCAAGCGTGGCTTTCATGACAATTTTAGCTGTGGACCGCTTCTTCAGGATCCTTTACCCACACCACCGTATTTGTCGAATGAATGTGAAACAAGGATTAATGTTGTCTAGCATGACTTGGGTGATTGTTCTTCTCCTTCGTCTTCCATCTGCCCTCAGCCCGGTCCTTACATCACACAAAAACTCTTCAAAGCTCACATGCCACAGTTTCCTCTCATGGACCTCACCATCAGTTCAGATGAGAATATATAATTCAGTACAGCTAATAGAAGTCCTGGTGGCTTTCACCTTGGTGGTTTTTTGCTTGGTGCGTGTTTTCTCTAACACCAACATTCGGCAGTCTAAGGGACCGCACCGCAGGGTGAAGAGGGCTGTGAGATTGCTTTTCATTTTTGTGATCATCTTTGTTCTCTGTTTTCTACCTACGGTCATCTTTGGCAACTTCCTTCAAGTGTTTCCTTGCTCTGAATCCCTCATTGTGTGTCTCCATGCCTCTTTAGCTTTATCCTACATGAACAGTGCACTGGATCCAGTCATCTACTGCCACATTAACGCTTGGTTTCGTGACACCCTGAAAGGCAAATCCAACTCATTGGGAATGACGAAGTTTAAGATGAGTGCGAAGACAAACAAAAAACCTTGATCTCTTTGAGGAACTGAGGAAATTTAAGCATGTTTAACTTAAGCACACATGATACTTTTCTTTTTATGTGTAATATACATGCGTACAGCATGTCACAGGATTattcatgaaatgttgtttatatAACTCCACGtgtggattaaattaattaatttatttgagaCATTTCTTTATCTAAAGTAGAACTGAAAACTCATCCATCTTTCTAAAGCTTCCcataattttgacattttgtttgTCTATATAATAAAAGTCAGCTTATTTTGTCAGCAAATAGGTGTT
>TCONS_00010278
ATGAGTAACATCACCTCCTGCATGGAACCTCACTCCTTTATTTCTTCCATTTTAAAGCCCATTTTCATATTGGAGTTAATTTTGGGGTTGCCTGGAAATGTGTTTGCTCTGTGGATTTTATTTTTCAAGTCTCCATGGAAAGCCTGCAATGTGTATTTCTTCAGCCTGGTAATAGCTGACCTCCTACTCCTCACTGGGATGCCTTTCCGCATCGATTATTTTTTTCGTGGTGAAGACTGGATATTTGGCGAATCCATTTGCCGCCTTGTTTTATATGTCATATCAGTAAACTCCTCAGCAAGCGTGGCTTTCATGACAATTTTAGCTGTGGACCGCTTCTTCAGGATCCTTTACCCACACCACCGTATTTGTCGAATGAATGTGAAACAAGGATTAATGTTGTCTAGCATGACTTGGGTGATTGTTCTTCTCCTTCGTCTTCCATCTGCCCTCAGCCCGGTCCTTACATCACACAAAAACTCTTCAAAGCTCACATGCCACAGTTTCCTCTCATGGACCTCACCATCAGTTCAGATGAGAATATATAATTCAGTACAGCTAATAGAAGTCCTGGTGGCTTTCACCTTGGTGGTTTTTTGCTTGGTGCGTGTTTTCTCTAACACCAACATTCGGCAGTCTAAGGGACCGCACCGCAGGGTGAAGAGGGCTGTGAGATTGCTTTTCATTTTTGTGATCATCTTTGTTCTCTGTTTTCTACCTACGGTCATCTTTGGCAACTTCCTTCAAGTGTTTCCTTGCTCTGAATCCCTCATTGTGTGTCTCCATGCCTCTTTAGCTTTATCCTACATGAACAGTGCACTGGATCCAGTCATCTACTGCCACATTAACGCTTGGTTTCGTGACACCCTGAAAGGCAAATCCAACTCATTGGGAATGACGAAGTTTAAGATGAGTGCGAAGACAAACAAAAAACCTTGA

Function

symbol description
hcar1-4 Predicted to enable G protein-coupled receptor activity. Acts upstream of or within response to wounding. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human OXER1 (oxoeicosanoid receptor 1).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0009611 response to wounding biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-111111-10 Predicted to enable G protein-coupled receptor activity. Acts upstream of or within response to wounding. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human OXER1 (oxoeicosanoid receptor 1).

Ensembl:

ensembl_id ENSDARG00000087084

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010277 False 1470 mRNA 0.40 2 25292876 25294769
TCONS_00010278 True 939 mRNA 0.43 1 25293158 25294096

Neighbor

gene id symbol gene type direction distance location
XLOC_005364 kcng3 coding downstream 75659 25209369 ~ 25217217 (-)
XLOC_005363 cox7a2l coding downstream 91300 25197383 ~ 25201576 (-)
XLOC_005362 rhoq coding downstream 142597 25110016 ~ 25150279 (-)
XLOC_005361 cript coding downstream 195356 25094099 ~ 25097520 (-)
XLOC_005360 socs5a coding downstream 226960 25043156 ~ 25065916 (-)
XLOC_005366 zfp36l2 coding upstream 81870 25376639 ~ 25380028 (-)
XLOC_005367 NA coding upstream 128948 25423717 ~ 25432558 (-)
XLOC_005368 six2b coding upstream 315250 25610019 ~ 25612170 (-)
XLOC_005369 NA coding upstream 590890 25885659 ~ 25887891 (-)
XLOC_005370 sncgb coding upstream 599770 25894539 ~ 25916530 (-)
XLOC_005356 NA non-coding downstream 501009 24788503 ~ 24791867 (-)
XLOC_005355 NA non-coding downstream 571550 24714386 ~ 24721326 (-)
XLOC_005354 NA non-coding downstream 990861 24280847 ~ 24302015 (-)
XLOC_005353 NA non-coding downstream 1112807 24179244 ~ 24180069 (-)
XLOC_005350 NA non-coding downstream 1872566 23415226 ~ 23420310 (-)
XLOC_005374 CR854941.1 non-coding upstream 845436 26140205 ~ 26140321 (-)
XLOC_005375 CR854941.2 non-coding upstream 906116 26200885 ~ 26219991 (-)
XLOC_005378 NA non-coding upstream 1167537 26462306 ~ 26466782 (-)

Expression


Co-expression Network