timm8a (timm8a,LOC107742474,LOC107680336,LOC107593201)


Basic Information

Item Value
gene id timm8a
gene name timm8a,LOC107742474,LOC107680336,LOC107593201
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 12500940 ~ 12504810 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU134687
gtaAGGCATGTCCGGTTAAGTTAACGCGTGAAGGGCAGGATCACGAACCTTAAGCGTGCTATCTtccattaaattataaatttgatTTACGTTAATCTGATGGATAGTGAAGGCGTGAGAACTGACCCCCAGCTTCAGCAGTTCATTGAAACTGAGTCTCAAAAGCAAAGGTTTCAGCAGCTGGTTCACCAAATGACAGAAGTCTGTTGGGAGAAGTGCATGGATAAGCCTGGTCCGAAGCTTGACTCAAGGACAGAAGTGTGTTTTATAAATTGTGTTGAACGTTTCATTGACACAAGCCAGTTCATCCTCAACAGACTTGAACAAACTCAGAAGACAAGAGACTCATTCTCAGAGACCATAACAGACTAGCTGGAACTTTGTTCCCAAACCCCTTGTGAAATAACTGTCAT
>XM_026940609.2
ttttgccaagtaAGGCATGTCCGGTTAAGTTAACGCGTGAAGGGCAGGATCACGAACCTTAAGCGTGCTATCTtccattaaattataaatttgatTTACGTTAATCTGATGGATAGTGAAGGCGTGAGAACTGACCCCCAGCTTCAGCAGTTCATTGAAACTGAGTCTCAAAAGCAAAGGTTTCAGCAGCTGGTTCACCAAATGACAGAAGTCTGTTGGGAGAAGTGCATGGATAAGCCTGGTCCGAAGCTTGACTCAAGGACAGAAGTGTGTTTTATAAATTGTGTTGAACGTTTCATTGACACAAGCCAGTTCATCCTCAACAGACTTGAACAAACTCAGAAGACAAGAGACTCATTCTCAGAGACCATAACAGACTAGCTGGAACTTTGTTCCCAAACCCCTTGTGAAATAACTGTCATTAAACAgtcaaagaaaacatttttcattctc

Function

symbol description
timm8a Predicted to enable metal ion binding activity. Predicted to act upstream of or within protein transport. Predicted to be located in mitochondrial inner membrane and mitochondrial intermembrane space. Human ortholog(s) of this gene implicated in deafness-dystonia-optic neuronopathy syndrome and dystonia. Orthologous to human TIMM8A (translocase of inner mitochondrial membrane 8A).

NR:

description
Mitochondrial import inner membrane translocase subunit Tim8 A

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K17780 TIM8; mitochondrial import inner membrane translocase subunit TIM8

RNA

RNA id representative length rna type GC content exon number start site end site
TU134687 False 413 TUCP 0.43 2 12500971 12504801
XM_026940609.2 True 453 mRNA 0.41 2 12500940 12504810

Neighbor

gene id symbol gene type direction distance location
btk btk,LOC107554824 coding downstream 8141 12437839 ~ 12492799 (-)
LOC117597734 NA coding downstream 190777 12298166 ~ 12310163 (-)
hdac3 hdac3 coding downstream 437803 12025781 ~ 12063137 (-)
LOC113542750 LOC108268434,LOC108436714 coding downstream 957216 11481891 ~ 11543724 (-)
LOC113542810 zc4h2,LOC108269407,LOC108436709,LOC103036162 coding downstream 1102044 11388502 ~ 11398896 (-)
atoh8 atoh8,LOC107677004,LOC107753212,LOC107571829 coding upstream 22681 12527491 ~ 12549293 (-)
spdl1 spdl1 coding upstream 76646 12581456 ~ 12662949 (-)
hspa9 hspa9,LOC106604950 coding upstream 356840 12861650 ~ 12904853 (-)
LOC113529411 hnrnpa0b,LOC108269291,LOC107593199,LOC107740138,LOC107680986,LOC107554845 coding upstream 557528 13062338 ~ 13063432 (-)
elf1 elf4 coding upstream 1664025 14168835 ~ 14208465 (-)
G114001 NA non-coding downstream 121447 12379277 ~ 12379493 (-)
G113961 NA non-coding downstream 123160 12377313 ~ 12377780 (-)
G113985 NA non-coding downstream 208476 12291992 ~ 12292464 (-)
G113979 NA non-coding downstream 217886 12278822 ~ 12283054 (-)
G113972 NA non-coding downstream 237770 12258215 ~ 12263170 (-)
G114095 NA non-coding upstream 5060 12509870 ~ 12512353 (-)
G114096 NA non-coding upstream 8019 12512829 ~ 12514622 (-)
G114103 NA non-coding upstream 13845 12518655 ~ 12522672 (-)
G114169 NA non-coding upstream 59938 12564748 ~ 12564968 (-)
G114176 NA non-coding upstream 67537 12572347 ~ 12589625 (-)
G114013 NA other downstream 76883 12423728 ~ 12424057 (-)
G113959 csnk1a1,LOC106604944 other downstream 131997 12321331 ~ 12368943 (-)
LOC113542864 LOC108427892,LOC108268827,LOC107740141,LOC107593202,LOC106612226,LOC107554835 other downstream 326035 12169629 ~ 12174905 (-)
LOC117597634 LOC101884462,LOC101885893 other downstream 388724 12079524 ~ 12112216 (-)
G113674 NA other downstream 642924 11818878 ~ 11858016 (-)
G114097 NA other upstream 11548 12516358 ~ 12518194 (-)
G114215 NA other upstream 189961 12694771 ~ 12695509 (-)
fbxo38 fbxo38 other upstream 429747 12934557 ~ 13027955 (-)
G114460 NA other upstream 1042702 13547512 ~ 13550775 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683,LOC107593230 other upstream 1336809 13841619 ~ 13915588 (-)

Expression


Co-expression Network