G114097


Basic Information

Item Value
gene id G114097
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 12516358 ~ 12518194 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU134690
ctcaccacggttgtaaatagtgcttatttgagttactaaagacttcctgtcagctcaaactagtctgAACAATCTCCTCtgatctttctcatcaacaagctgtttcagtctgcagaccctctgcacatGGGATGtgaccattctgtgtaaactgttgagtgtgaaaatcccaggagagcaatagtttctgaaatagtaaatccagcccgtctggcaccaaaaTCCCTGCCATGATTAAAGTCAAAGAGatgacactttttcttcattctgttgtttgatgtgaaaattaactggagctcttgacatgtatctgcatgattttttttttgcattgcactgctgccacatgattggctgattagataattgtatgaatgtgcaggtgaacaggtgttcctaataaagtggacgagAATGTATTTTTGCTGATGAAATCTATAAGCAATCTATTATTTCTAATATCTATTTATTAGTTGGTCTTTTTTCACTGAAAggagtgttcacatcaaatttCAGACCTGGCCCAATCATAATCTGGTCAACAGAGTGGTTTAAATTTTTGGTTATGTTGATAATGTTACGTCGATTGAATTCATGGTGTTTAGTGGACAGAAAACAGTTGAAATCCTTGACTGTATGTTTGCAAGTTTGAATATTAGACATACAGTGAATTAATATATGAccatttcaacacatttaggATCTGTTTCAAGCTGATTCATCAACAGCTAGATGGGGCTTCAGAGAAAACTTGCACTTTTGCTAATGTTACATGGACAGAATTTTACGTAACATTAGCAACACATCAGCTTGGCAAGAGCCTGCGACCCATTTCAGCACTACCAAACTAAAAGAATAacatatttcaaaacaaaatatatatatatatatatatatatatagacatatagaCATCGAAACATTCAGTGTCCAATTTTACCTTCTAATGGTTACAATTTATAGAAAATGTGATGTGTTGCTAATGTTACATGGACAGAACTTCatgttgaatgttgaatgtCTGACTGATTTTTGCATTAGAAACCCAGGGCCATGTTTAGTTGCATACCTTTTTTTGTGGGAGATTGTCCCTTATGTCCTCCTATTTGTAGAATTCTTGTATGCAATTTTCaggttttacacattttttcagtTTCCTTTTGCATGGATTGAACCATTTCAGACTGGACAAGGCACCTGCCAACTTTGATAACTAACTTCTTTGCAATTTCCTTGACAAGTTTTCTACCAGCCAAAGTTGACTTCACTGCAAGAATGGCTTCCTTTGCCTCAGCAGAAAACAGTTTCTTTCTATGTGGTTCTGCAGAATGAGTGGACTCTAATAATTTGCACTTCCTGGGACTGTGCATGCTATTCTTCACAAGCCTGGACACAAAATGCATACATACAACATGTTTTTCAGGATCCTTCGGTAGGGATCCCCTAACTTTAGTAACTGCATTATACTGGGTCTTTTTACATGCAAAACCAGTTGATGGGGTAGTCTCAAATTTTTCcaacttctttttttgtttagcttctctgttttttttttttttttttttttttggtggctCAGGTTACGCCAAACCTCTCTCTGTGCATTCACAACCAAACGAGTTTTCACCTTTGGAGTGGGAATTAGGAGTACCATTTTCAATCTGCTTCAGCCGGAATCTCCTCTGCCAAAGGCGAACTTGTTCTTTTTCTTGTGCTGCTCCTTTGCTGCTGCCACTGGCCTTTTCTTCTGCAAGTTCTCCTTTAATTaatctcttttttgttttgctctttgcttttgtttattgAGATATTCTTAGTATCTTTTGgatcttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134690 True 1837 TUCP 0.37 1 12516358 12518194

Neighbor

gene id symbol gene type direction distance location
btk btk,LOC107554824 coding downstream 23559 12437839 ~ 12492799 (-)
LOC117597734 NA coding downstream 206195 12298166 ~ 12310163 (-)
hdac3 hdac3 coding downstream 453221 12025781 ~ 12063137 (-)
LOC113542750 LOC108268434,LOC108436714 coding downstream 972634 11481891 ~ 11543724 (-)
LOC113542810 zc4h2,LOC108269407,LOC108436709,LOC103036162 coding downstream 1117462 11388502 ~ 11398896 (-)
atoh8 atoh8,LOC107677004,LOC107753212,LOC107571829 coding upstream 9297 12527491 ~ 12549293 (-)
spdl1 spdl1 coding upstream 63262 12581456 ~ 12662949 (-)
hspa9 hspa9,LOC106604950 coding upstream 343456 12861650 ~ 12904853 (-)
LOC113529411 hnrnpa0b,LOC108269291,LOC107593199,LOC107740138,LOC107680986,LOC107554845 coding upstream 544144 13062338 ~ 13063432 (-)
elf1 elf4 coding upstream 1650641 14168835 ~ 14208465 (-)
G114096 NA non-coding downstream 1736 12512829 ~ 12514622 (-)
G114095 NA non-coding downstream 4005 12509870 ~ 12512353 (-)
LOC117597691 NA non-coding downstream 12388 12501180 ~ 12503970 (-)
G114001 NA non-coding downstream 136865 12379277 ~ 12379493 (-)
G113961 NA non-coding downstream 138578 12377313 ~ 12377780 (-)
G114103 NA non-coding upstream 461 12518655 ~ 12522672 (-)
G114169 NA non-coding upstream 46554 12564748 ~ 12564968 (-)
G114176 NA non-coding upstream 54153 12572347 ~ 12589625 (-)
G114183 NA non-coding upstream 146560 12664754 ~ 12665071 (-)
LOC117597685 LOC107701872 non-coding upstream 158774 12676968 ~ 12691407 (-)
timm8a timm8a,LOC107742474,LOC107680336,LOC107593201 other downstream 11548 12500940 ~ 12504810 (-)
G114013 NA other downstream 92301 12423728 ~ 12424057 (-)
G113959 csnk1a1,LOC106604944 other downstream 147415 12321331 ~ 12368943 (-)
LOC113542864 LOC108427892,LOC108268827,LOC107740141,LOC107593202,LOC106612226,LOC107554835 other downstream 341453 12169629 ~ 12174905 (-)
LOC117597634 LOC101884462,LOC101885893 other downstream 404142 12079524 ~ 12112216 (-)
G114215 NA other upstream 176577 12694771 ~ 12695509 (-)
fbxo38 fbxo38 other upstream 416363 12934557 ~ 13027955 (-)
G114460 NA other upstream 1029318 13547512 ~ 13550775 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683,LOC107593230 other upstream 1323425 13841619 ~ 13915588 (-)
G114873 NA other upstream 1702122 14220316 ~ 14221855 (-)

Expression


Co-expression Network