G114103


Basic Information

Item Value
gene id G114103
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 12518655 ~ 12522672 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU134699
aaaaaagtatggaatcactcaatgttgaggaaaaaattatggaatcatcaacaaaaaaacacaattagtactttgttgctcctcctctggcttttatgaCAGCCTGAATTCTGTGAcgcatagacctcactaatgaaaaacaatattctccatcaatctggttccaattttctcgaatagcagttgacagatcagctttgcaggatGGAGCCTTATCATagaccagttttttttaatatccaccataaattttcaattggattgagatccggactgtttgctggccatgtcactgagttgatatgcctttcctgtaGAAAAGCTTTAACACtctttgctctgtggcaagaagcattgtcatcctgaaaaattagtTCATCACCAAActtattttctatggatggaatgagaaaagtgTCCAAAATTTCAATGTACACCTGTGCAtagactgctgaggtaatgactgccatctcccctggtcctttactTGACATGCAACCCCATATCATAAaggagttgggaaatttgattgttttcttcaggcagtcatcttcaTATGTTTCgttagaacggcaccagacaaaagttccagcatcatctccttggccagtgcagattcatgattcatcactgaatatcactttcatccaatcatccacactccatgactgcttctccttagcccattgtaaccttgttttcttctgttttggtgttagtgctggttttcgtttggcttttctatatgtaaatccCATctcattcagccggtttcttatagttctgtcacaaacattgactcctgtttctGCCCATTTGTTTTTTCAAGGCATACTGCTTTCAGTTTTCTATCCTGACGCTTTGACgtcttccttagtctgcctgtatgttttccttttataaccttcccattaagtttatatttgcaccaaattttagacacagctgactgagAGCAACCAACTTATTTGGCCACACTCCGcattgaaattccttgttgaaggagttttataatccgttccattgtttcaactgacaactctctcgttggagccatgtttcctttcaaatagccaagtccaacagctCGTTAaggtgtgtaagcactcccttttaactgctgactaaTTAGCATTTTAAGACTTGTCCCGGTATTTGTTTTAGAAGTGGAAATTAAGAAAGGCATGAAAATTAAGATGATTCCATAAtattttcctcaacattgagtgattccaatGCTGATTCCAagttttcctctacttgatttggaaaaagacatgccattaataaaaaaactgaatttgtcagtgaatttttttgatgtatgtttcacaaagccagaatgttaagctattgaacaaaacctttctgtgtcatatctgtgatttatttgtttgctataaagtaaaaaagctggatgaacatcctctaagtgtggtgattccataatttttgccaggggttgtaatCATTCCACTTCCTGACTTCACTGACGCCTTCACTGACCAGCTGGGGTGTTGGTTTCCTGAGCCATCCTGCCTGGGTGACCAGTGTCTGGCTCCTGACTCTTCAGAGGATATCACTATAACTCCTGGCACCACAGGCACCACATTCCTCTGTCTGCTGGCTCTGCAGAAGATGTTGCTCTGTCTCCACAGGAAGTGGTGGCTCTGCTGCCTGGGTTTGCAGAGGGCATCAGTTCAGTTTCAGTCACCAAGTTTTCAATTCCCCTCTCTCAGCGAGTACACCGCACACTCAGGGATGGAAAATgcactgagaaattatacttataagtgaaaatattatatataagaattataaaaattatatatatgtgaaaGTATAGATCATGTGTCAAAATCCTAGTAAATCAAAAGTGGAATcagttgctacttttaaatgggCTGTGTacttttgtgttcattcattatcatatttttaaactgaaatgaaaaaccaaaaatgatttttaaaaatggtataatagcaattattaaaataataaaaaataataataactaaaaattaaaaataattgtttgtttttcaaaatatttggaattttggaaattcattattcattatctcctttctctttattaattaaattaatttgctGAAATCATAAattgcaaaaatgaaaatgtaatgaaaaatattgaatCTACAAATTGTCAAGAGTAGGTCTATCGCTAGGCTGGCTAAATTTTCAGATGAAAGTATGAATGCCAGCAGCTAGAGATCATGGCTTCACTTGAATCATATTAATGAAAACCCCAGTGGGCAGCCACATGAGGCCTTTTCTGGTTCAATATGGGCAGCCCACACAGGACATTTGGTGATTTTCTCATTGGTGTCACATTGGCCTCATGACACTGGCCTCATGTGGGCTGCCAACAATGGTTATGCTCCAGCATACGCATTTACGCAGTCAGCTGACGTTCTGCATTTTTCTATGTTATTACAAATGACCCTCAAAATAATTTGAGATAACCAACAGAATATAAGtaaattaatacacacacacaaatttgtgGGATGGGCTACAGCCTGTGGAACCCTCATGGACGGTCATCCAAGCCCAGGTTACTCCAGCAAGAGGACGACTGGAgacaaattttatatatatgtatgtatatataaaatgtaggTAAGTGCACCCACTAAGCCCATTTACTCTTTAAGACCTCTTTCAATGTTGACAaagtttaaagaaagaaagaaagcaaacgTTGTTTTAGCCAGCTTTGCAATTTGTTACTAGATTGATGTTTTTGTTGCATGCAGATATCAGATTAGCCAGTATTGAGTGAAGACATGCAATGTGCATGCAGTCCCTGGTGATCTTGAAGAGAATAACAAAATCTTTGCTGTTTAGCAGCTACctaaaaaaagtgcattttcagCTATTCCTGTGGTAAATAATGTAATGGCATGTAAAATAGGGAGATTAATGCTTTGGTTTATGTATATGatgtaatgcttttaaaaataaaataattaacgatTTAATACTATTTCTTGTCAAACAGAAAATGAGGCCAGAAAATGCTAACTTGTTTTCCAAGTTAGCTAAGACACTGGAATAATGTCGTGTACAGTCTAATTTGTTTCATATAACTCTAGTTAGAAATAAACTATAATGTTTCTATTATGTttgatttaaacaaatatttttataaatcagcattttttttcccacgtGGGCTTAAATGGTACAGTGGTACATGAAGTATGCTCTATTTAACTGACTttaaatgagaatttttttttttttttcatattatttggAAAATAGTTAATATGTTTCAGTCCCCCTGGTAAATGTGTGCgcttgaaatgtattttttaaataactttcaCAGATAAAGTAGTATTATAACTTTTTCTCTAATTATTATAGCTGTCCCATTTAAGCCTAGTTTGTTCCTTTCAAGCCCACTTGAGCCACTTCCTTTCAAACTTCTATGCATTACTGTATAGGTGATGTTAACATCACCTAATGTGCACTATTCCTTTACTTACAGAGAAATTATAGTAGCTGTCTAAAAATGGTAGAAggcgtaataataataatagtaaaaaaaaaactttagacccttgcaaaaaaatatgaagaaaataaggAGTCAACAGGAAGTCATTTAGGGCAAGAGTGAAGGTGTAGAGAGGCATTGCAGGAAATGGAGACCTGCATATGCTGGTATACCTCCTAGCTGTAAAAAGGGGAATTTCAGACTGTCTGGAGGtggtctgtaaaaaaaaacaacaaaagttgAGCTTTGTTGTGATTTGCTGAACGTAAAGTTAactaaaattaattacaaaaaatggAAATACTGTAGTGGCCAAATGGACtgattttccttcttcttcttgattATACTGTAATGTTAACAAAATTTTTGACAAAAAATGCAGAAGATGAGAAAAGAAGGTTCATTCTCTTCAAgtactggaattttttttaattcaagtgaaatttcacacacaacagtctctagagtttacgcagAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134699 True 4018 lncRNA 0.36 1 12518655 12522672

Neighbor

gene id symbol gene type direction distance location
btk btk,LOC107554824 coding downstream 25856 12437839 ~ 12492799 (-)
LOC117597734 NA coding downstream 208492 12298166 ~ 12310163 (-)
hdac3 hdac3 coding downstream 455518 12025781 ~ 12063137 (-)
LOC113542750 LOC108268434,LOC108436714 coding downstream 974931 11481891 ~ 11543724 (-)
LOC113542810 zc4h2,LOC108269407,LOC108436709,LOC103036162 coding downstream 1119759 11388502 ~ 11398896 (-)
atoh8 atoh8,LOC107677004,LOC107753212,LOC107571829 coding upstream 4819 12527491 ~ 12549293 (-)
spdl1 spdl1 coding upstream 58784 12581456 ~ 12662949 (-)
hspa9 hspa9,LOC106604950 coding upstream 338978 12861650 ~ 12904853 (-)
LOC113529411 hnrnpa0b,LOC108269291,LOC107593199,LOC107740138,LOC107680986,LOC107554845 coding upstream 539666 13062338 ~ 13063432 (-)
elf1 elf4 coding upstream 1646163 14168835 ~ 14208465 (-)
G114096 NA non-coding downstream 4033 12512829 ~ 12514622 (-)
G114095 NA non-coding downstream 6302 12509870 ~ 12512353 (-)
LOC117597691 NA non-coding downstream 14685 12501180 ~ 12503970 (-)
G114001 NA non-coding downstream 139162 12379277 ~ 12379493 (-)
G113961 NA non-coding downstream 140875 12377313 ~ 12377780 (-)
G114169 NA non-coding upstream 42076 12564748 ~ 12564968 (-)
G114176 NA non-coding upstream 49675 12572347 ~ 12589625 (-)
G114183 NA non-coding upstream 142082 12664754 ~ 12665071 (-)
LOC117597685 LOC107701872 non-coding upstream 154296 12676968 ~ 12691407 (-)
G114216 NA non-coding upstream 173181 12695853 ~ 12696081 (-)
G114097 NA other downstream 461 12516358 ~ 12518194 (-)
timm8a timm8a,LOC107742474,LOC107680336,LOC107593201 other downstream 13845 12500940 ~ 12504810 (-)
G114013 NA other downstream 94598 12423728 ~ 12424057 (-)
G113959 csnk1a1,LOC106604944 other downstream 149712 12321331 ~ 12368943 (-)
LOC113542864 LOC108427892,LOC108268827,LOC107740141,LOC107593202,LOC106612226,LOC107554835 other downstream 343750 12169629 ~ 12174905 (-)
G114215 NA other upstream 172099 12694771 ~ 12695509 (-)
fbxo38 fbxo38 other upstream 411885 12934557 ~ 13027955 (-)
G114460 NA other upstream 1024840 13547512 ~ 13550775 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683,LOC107593230 other upstream 1318947 13841619 ~ 13915588 (-)
G114873 NA other upstream 1697644 14220316 ~ 14221855 (-)

Expression


Co-expression Network