G114176


Basic Information

Item Value
gene id G114176
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 12572347 ~ 12589625 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU134781
gtcgcgtattcctccaagtcagtgaagtcgccgtcagttgccgcttccctgaacatgtgccagtcagtgtgttcaaagcagtcctgaagagcagagatggctcttgctggccaggttttcacctgcttcagaaccggtttggagcgtctgactagcggtctgtatgctgggattagcataacagagatgtggtctgagtagccgaggtgggggcggggctccacCCGGTACgcgccggggatgtttgtgtaaacaaggtccagcacatttttccctctcgttgcaaagtccacatgctgatggaatttagggagcactgacttgagatttgcatggttgaaatctctggcaacaataaacagtctgtcagggtgtgaattctgcagctcgctaatagccccatacagttcacagagcgccTCCTTAGCATTGGCGTTAGCACTGGCGGGAATGTAGACACCGATTATGAAAACCGtagtgaattcccgtggtaaataaaaaggtctacatctaacagtcacaaactccaccagcgatgagcagtaactagaaactagcaccgagttcttgcaccattccgtgttgatgtaaacacacaagccgccGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134781 True 608 lncRNA 0.51 2 12572347 12589625

Neighbor

gene id symbol gene type direction distance location
atoh8 atoh8,LOC107677004,LOC107753212,LOC107571829 coding downstream 23054 12527491 ~ 12549293 (-)
btk btk,LOC107554824 coding downstream 79548 12437839 ~ 12492799 (-)
LOC117597734 NA coding downstream 262184 12298166 ~ 12310163 (-)
hdac3 hdac3 coding downstream 509210 12025781 ~ 12063137 (-)
LOC113542750 LOC108268434,LOC108436714 coding downstream 1028623 11481891 ~ 11543724 (-)
hspa9 hspa9,LOC106604950 coding upstream 272025 12861650 ~ 12904853 (-)
LOC113529411 hnrnpa0b,LOC108269291,LOC107593199,LOC107740138,LOC107680986,LOC107554845 coding upstream 472713 13062338 ~ 13063432 (-)
elf1 elf4 coding upstream 1579210 14168835 ~ 14208465 (-)
trnae-uuc_1 NA coding upstream 1619291 14208916 ~ 14208987 (-)
drp2 drp2,LOC107724836 coding upstream 1657447 14247072 ~ 14383606 (-)
G114169 NA non-coding downstream 7379 12564748 ~ 12564968 (-)
G114103 NA non-coding downstream 49675 12518655 ~ 12522672 (-)
G114096 NA non-coding downstream 57725 12512829 ~ 12514622 (-)
G114095 NA non-coding downstream 59994 12509870 ~ 12512353 (-)
LOC117597691 NA non-coding downstream 68377 12501180 ~ 12503970 (-)
G114183 NA non-coding upstream 75129 12664754 ~ 12665071 (-)
LOC117597685 LOC107701872 non-coding upstream 87343 12676968 ~ 12691407 (-)
G114216 NA non-coding upstream 106228 12695853 ~ 12696081 (-)
G114226 NA non-coding upstream 154847 12744472 ~ 12744681 (-)
G114227 NA non-coding upstream 155191 12744816 ~ 12745035 (-)
G114097 NA other downstream 54153 12516358 ~ 12518194 (-)
timm8a timm8a,LOC107742474,LOC107680336,LOC107593201 other downstream 67537 12500940 ~ 12504810 (-)
G114013 NA other downstream 148290 12423728 ~ 12424057 (-)
G113959 csnk1a1,LOC106604944 other downstream 203404 12321331 ~ 12368943 (-)
LOC113542864 LOC108427892,LOC108268827,LOC107740141,LOC107593202,LOC106612226,LOC107554835 other downstream 397442 12169629 ~ 12174905 (-)
G114215 NA other upstream 105146 12694771 ~ 12695509 (-)
fbxo38 fbxo38 other upstream 344932 12934557 ~ 13027955 (-)
G114460 NA other upstream 957887 13547512 ~ 13550775 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683,LOC107593230 other upstream 1251994 13841619 ~ 13915588 (-)
G114873 NA other upstream 1630691 14220316 ~ 14221855 (-)

Expression


Co-expression Network