G114226


Basic Information

Item Value
gene id G114226
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 12744472 ~ 12744681 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU134840
gtaactgtaactgttatTGTAATGAAGCATAGGTCTTGATGTGtctgtataaatgtatttatagaacagtaagacttgtttattaataattataaatggggccataattcattatgagcatgggcTTCACAGAAAGTGGAACCAAATTTATTTTTGGGGCTAcatatgttagtataaagaacttcaaacgcgttgaatttatgactaggt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134840 True 210 lncRNA 0.31 1 12744472 12744681

Neighbor

gene id symbol gene type direction distance location
spdl1 spdl1 coding downstream 81523 12581456 ~ 12662949 (-)
atoh8 atoh8,LOC107677004,LOC107753212,LOC107571829 coding downstream 195179 12527491 ~ 12549293 (-)
btk btk,LOC107554824 coding downstream 251673 12437839 ~ 12492799 (-)
LOC117597734 NA coding downstream 434309 12298166 ~ 12310163 (-)
hdac3 hdac3 coding downstream 681335 12025781 ~ 12063137 (-)
hspa9 hspa9,LOC106604950 coding upstream 116969 12861650 ~ 12904853 (-)
LOC113529411 hnrnpa0b,LOC108269291,LOC107593199,LOC107740138,LOC107680986,LOC107554845 coding upstream 317657 13062338 ~ 13063432 (-)
elf1 elf4 coding upstream 1424154 14168835 ~ 14208465 (-)
trnae-uuc_1 NA coding upstream 1464235 14208916 ~ 14208987 (-)
drp2 drp2,LOC107724836 coding upstream 1502391 14247072 ~ 14383606 (-)
G114216 NA non-coding downstream 48391 12695853 ~ 12696081 (-)
LOC117597685 LOC107701872 non-coding downstream 53065 12676968 ~ 12691407 (-)
G114183 NA non-coding downstream 79401 12664754 ~ 12665071 (-)
G114176 NA non-coding downstream 154847 12572347 ~ 12589625 (-)
G114169 NA non-coding downstream 179504 12564748 ~ 12564968 (-)
G114227 NA non-coding upstream 135 12744816 ~ 12745035 (-)
G114228 NA non-coding upstream 454 12745135 ~ 12745387 (-)
LOC113542678 NA non-coding upstream 1301 12745982 ~ 12755475 (-)
G114284 NA non-coding upstream 167018 12911699 ~ 12911903 (-)
G114299 NA non-coding upstream 267936 13012617 ~ 13012844 (-)
G114215 NA other downstream 48963 12694771 ~ 12695509 (-)
G114097 NA other downstream 226278 12516358 ~ 12518194 (-)
timm8a timm8a,LOC107742474,LOC107680336,LOC107593201 other downstream 239662 12500940 ~ 12504810 (-)
G114013 NA other downstream 320415 12423728 ~ 12424057 (-)
G113959 csnk1a1,LOC106604944 other downstream 375529 12321331 ~ 12368943 (-)
fbxo38 fbxo38 other upstream 189876 12934557 ~ 13027955 (-)
G114460 NA other upstream 802831 13547512 ~ 13550775 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683,LOC107593230 other upstream 1096938 13841619 ~ 13915588 (-)
G114873 NA other upstream 1475635 14220316 ~ 14221855 (-)
ebf1a ebf1,ebf1a,LOC105011268 other upstream 1925508 14670189 ~ 14775493 (-)

Expression


Co-expression Network