Gene
RNA
| Item | Value |
|---|---|
| gene id | G114228 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047601.1 |
| NCBI id | CM018547.1 |
| chromosome length | 30450434 |
| location | 12745135 ~ 12745387 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU134842 | True | 253 | lncRNA | 0.28 | 1 | 12745135 | 12745387 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| spdl1 | spdl1 | coding | downstream | 82186 | 12581456 ~ 12662949 (-) |
| atoh8 | atoh8,LOC107677004,LOC107753212,LOC107571829 | coding | downstream | 195842 | 12527491 ~ 12549293 (-) |
| btk | btk,LOC107554824 | coding | downstream | 252336 | 12437839 ~ 12492799 (-) |
| LOC117597734 | NA | coding | downstream | 434972 | 12298166 ~ 12310163 (-) |
| hdac3 | hdac3 | coding | downstream | 681998 | 12025781 ~ 12063137 (-) |
| hspa9 | hspa9,LOC106604950 | coding | upstream | 116263 | 12861650 ~ 12904853 (-) |
| LOC113529411 | hnrnpa0b,LOC108269291,LOC107593199,LOC107740138,LOC107680986,LOC107554845 | coding | upstream | 316951 | 13062338 ~ 13063432 (-) |
| elf1 | elf4 | coding | upstream | 1423448 | 14168835 ~ 14208465 (-) |
| trnae-uuc_1 | NA | coding | upstream | 1463529 | 14208916 ~ 14208987 (-) |
| drp2 | drp2,LOC107724836 | coding | upstream | 1501685 | 14247072 ~ 14383606 (-) |
| G114227 | NA | non-coding | downstream | 100 | 12744816 ~ 12745035 (-) |
| G114226 | NA | non-coding | downstream | 454 | 12744472 ~ 12744681 (-) |
| G114216 | NA | non-coding | downstream | 49054 | 12695853 ~ 12696081 (-) |
| LOC117597685 | LOC107701872 | non-coding | downstream | 53728 | 12676968 ~ 12691407 (-) |
| G114183 | NA | non-coding | downstream | 80064 | 12664754 ~ 12665071 (-) |
| LOC113542678 | NA | non-coding | upstream | 595 | 12745982 ~ 12755475 (-) |
| G114284 | NA | non-coding | upstream | 166312 | 12911699 ~ 12911903 (-) |
| G114299 | NA | non-coding | upstream | 267230 | 13012617 ~ 13012844 (-) |
| G114302 | NA | non-coding | upstream | 269185 | 13014572 ~ 13015871 (-) |
| G114314 | LOC107721237 | non-coding | upstream | 284471 | 13029858 ~ 13030120 (-) |
| G114215 | NA | other | downstream | 49626 | 12694771 ~ 12695509 (-) |
| G114097 | NA | other | downstream | 226941 | 12516358 ~ 12518194 (-) |
| timm8a | timm8a,LOC107742474,LOC107680336,LOC107593201 | other | downstream | 240325 | 12500940 ~ 12504810 (-) |
| G114013 | NA | other | downstream | 321078 | 12423728 ~ 12424057 (-) |
| G113959 | csnk1a1,LOC106604944 | other | downstream | 376192 | 12321331 ~ 12368943 (-) |
| fbxo38 | fbxo38 | other | upstream | 189170 | 12934557 ~ 13027955 (-) |
| G114460 | NA | other | upstream | 802125 | 13547512 ~ 13550775 (-) |
| pcdh19 | pcdh19,LOC107680972,LOC107740148,LOC107688683,LOC107593230 | other | upstream | 1096232 | 13841619 ~ 13915588 (-) |
| G114873 | NA | other | upstream | 1474929 | 14220316 ~ 14221855 (-) |
| ebf1a | ebf1,ebf1a,LOC105011268 | other | upstream | 1924802 | 14670189 ~ 14775493 (-) |
