G114302


Basic Information

Item Value
gene id G114302
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 13014572 ~ 13015871 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU134922
gaaaaaacaaaacaggcctatcagagagatagcagaaactttaggagggccaaatcaacaatttggtacattcttaaaaagaaggaatgcactggcaagctcagcagcaccaaaaggcctgggagaccacagaaaacaactaaagtggatgattgcagaattcttttcttattgaagaacaaccccttcacaacatctagccaagtcaggaacactctggaggaggtaggcctatcattgtcaaagtctacaatcaagagccaccttcatgaatgtaaatacagacggtttacctcaagatgcaaaccgctggtaacactcaagaacacaaaggccagattagactttgctaaaaaacctctaaaaaaaaaagcctgaccagttctgatgcaagattaacttgtaccagaatgatgggaagagaaaggtatggagaaggaaagaaagggctcatgatccaaagcataccacatcatccgtcaaacatgtggaggcagtgttatggcatgggcatattTGGctgtcagtcacctgacctcaacccaactgagctgcttttcacttactgaagacaaatctgaaggcagaatgacccacaaacaagcagcaactgaagatggctgcagtaaagacctggaaaatcatctcaagggaggaaactcagcatttggtgatgtccatggggtccagacttcaggtagtcattgactgcaaaggatttacctccaagtaataaaaataatcctaatatttatgattatattagtttgtgccattacttttgagcctgtgaaaatggaggaactctgtaaaaaatggctgtaattcctaaacggttaatgcaatatttttgttaaaccccttgaattaaagctgaaagtctacgcttcagtcacatcttgactgcttcatttcaaatccactgtggtggtgtacagaggcaaaattaccaaaactgtgtcactgtcccaatatttatggacctgactgtatatcctTAACTACATAGCTATtgttaatatacatatatttttctaataatttatCACACCACATCTTACCTCCATCTTCTTCATGTCTAAGGGAAATGATGTATCTATATAGTTAACTCTGATTGATCAAGtcatcttctttttcttcttctccgaTTTACTGGCGGGCTACAAACCAACGTTAGAGGTGCATGCCGCCACCTAACCGGAGTATGTACAGTCATGACTTTATAAAGAAGTTATATTCTGGATATTAAACCTGCCTCttttaagtatttaaataaaGCCCTTTGAACCTGTACTTTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134922 True 1300 lncRNA 0.39 1 13014572 13015871

Neighbor

gene id symbol gene type direction distance location
hspa9 hspa9,LOC106604950 coding downstream 109719 12861650 ~ 12904853 (-)
spdl1 spdl1 coding downstream 351623 12581456 ~ 12662949 (-)
atoh8 atoh8,LOC107677004,LOC107753212,LOC107571829 coding downstream 465279 12527491 ~ 12549293 (-)
btk btk,LOC107554824 coding downstream 521773 12437839 ~ 12492799 (-)
LOC117597734 NA coding downstream 704409 12298166 ~ 12310163 (-)
LOC113529411 hnrnpa0b,LOC108269291,LOC107593199,LOC107740138,LOC107680986,LOC107554845 coding upstream 46467 13062338 ~ 13063432 (-)
elf1 elf4 coding upstream 1152964 14168835 ~ 14208465 (-)
trnae-uuc_1 NA coding upstream 1193045 14208916 ~ 14208987 (-)
drp2 drp2,LOC107724836 coding upstream 1231201 14247072 ~ 14383606 (-)
cenpi cenpi coding upstream 1367868 14383739 ~ 14398448 (-)
G114299 NA non-coding downstream 1728 13012617 ~ 13012844 (-)
G114284 NA non-coding downstream 102669 12911699 ~ 12911903 (-)
LOC113542678 NA non-coding downstream 259097 12745982 ~ 12755475 (-)
G114228 NA non-coding downstream 269185 12745135 ~ 12745387 (-)
G114227 NA non-coding downstream 269537 12744816 ~ 12745035 (-)
G114314 LOC107721237 non-coding upstream 13987 13029858 ~ 13030120 (-)
G114313 NA non-coding upstream 41834 13057705 ~ 13058683 (-)
G114375 NA non-coding upstream 99878 13115749 ~ 13121619 (-)
G114364 NA non-coding upstream 108695 13124566 ~ 13129589 (-)
G114390 NA non-coding upstream 174115 13189986 ~ 13190226 (-)
G114215 NA other downstream 319063 12694771 ~ 12695509 (-)
G114097 NA other downstream 496378 12516358 ~ 12518194 (-)
timm8a timm8a,LOC107742474,LOC107680336,LOC107593201 other downstream 509762 12500940 ~ 12504810 (-)
G114013 NA other downstream 590515 12423728 ~ 12424057 (-)
G113959 csnk1a1,LOC106604944 other downstream 645629 12321331 ~ 12368943 (-)
G114460 NA other upstream 531641 13547512 ~ 13550775 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683,LOC107593230 other upstream 825748 13841619 ~ 13915588 (-)
G114873 NA other upstream 1204445 14220316 ~ 14221855 (-)
ebf1a ebf1,ebf1a,LOC105011268 other upstream 1654318 14670189 ~ 14775493 (-)
tmsb2 NA other upstream 2064913 15080784 ~ 15082504 (-)

Expression


Co-expression Network