G114364


Basic Information

Item Value
gene id G114364
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 13124566 ~ 13129589 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU134989
CTCAGGTGAACACATTGCAAATACATGTTAGTATTTGCCGACTATATATACTGTCAaggtcaagtggctttattgtcatttcaacaatatacagctagttaatgaaacaacgttcttccaggaccatggtgctagataaaacaaacagacctacaagagactacacatttttacataaagtgcacatgcaaacgtgtaaacagcacaagatagtacaatgactaccaaaacaggacaataggcaaaGTAAGATACAGTCAGGGAGGGCTTTTATCAAACTATAACGTATTTATTCATCAACACAGCTGTAACCTTGGTGAAAGAATTATCCCATCCATAAATAAGGTCCAGACATCACAATGATTCAATATACCAttactgtcattattattattattattattattattattatataaccaAATAACTGAAGGAAGCACACTACTATCAAACCCAATGGATTGAAGGTGTGGTTAAGCATCAAGAACAAGCAGTTGACAAGGCTTTAACCATGGGAACTGGCAAAACAACAGTTTCGCAAAAGTATAAGCAAACACAAAACTACTGCAGTAAGTACCCATAAAGTGTAACTGGCATTAATTAGCTAAACACTAACATACTTCTCGGTCTGTAAGATACTAGGAACACCAAGGCTTGCACATCATTAACCTCATTTaaccttgtttttttaaacatttaaacaactaACAAATGACATACCTATAATGCCACTTCTTTCTTCCCCCCTCTCTTTGCATGCATGTGTCCAACAGTGTTAAAAGAAATAAGAGACACTATATAAAACAATGGTATCCTGTCACATTCTTCTGCAAAGGCATTTTAGAACACATTGCCTTCATTGTCCTGTCAACTAATGTGTGAGgctttctcattatttcaaaaaaTTAATATCTGTGCtcaaaataaacatgaacaattCTCACCTTTAAAACATCTCTGTCAGCTATCTTCTTTGAGGTGTCCACAACACGTGCCAGTATGGCTCAATTTTAATTAAGAAACTAAGGGAAAGTGATTATCTTTGGAAGATCCATCCCCTAAATTTTCACTGCACAACAGATAGGTACAATTAAATGCAAAAggcaaacaataaaaaataggGACTGAAAGGTTATTCAATGCTTCTTCAAGCATTTATGACATAAATAATTACAGGCAACAAAGAACTACAATGAAACATTAATTACCATAAAccattaattatatttaataaaagaagTTAGATGAACAGTAAAACGCCACACctaattttcttatttttcagtATCTCTCACACATTCAGGCTCTGTGAATATCACAGATGTTTGTTATAAATATTCTATGTAATGTCATCTCTTTCTACATATGCATGTGCCCAgtgtttgaaaaagaaaaaaaaacggaagaaaaaagaaaaaaaaagggcactACATAAGACAATGGTGTCCTGTGATACTCGTCAGCCGAGACATTTTATAAAACTTTGTATTCATTGTCCTTTGTATTCATTGTTCATTTGGCatacgcccttatccagagcgacttacagaagtccTTTGaaatttctataaataaatacatcctgatgcTAGTTCACTCGGTCCTGGATTAAGAATATTATCAGTCTAAAAAAACTCTACTGGGGAGTTAATAATGCATATGATGCATTTGtccaaaaaacaaatcaaactcATCAGCTCTAACcatgaattattactacagcTTCACCGTAGTGACTGGTAGCAACTTACAAACACCATGTtttggaggattttttttccccacaatatTTAACAGCACTGCAGCCTTAAATAAAAACCAAAGGGAGATGAACTGCATAACTCTAAGGAGAATTTATACTCCTAAGTTCATTTATGCTGAATTCATAATGTTGTAATAATGTTGtaaaaaagtaatgaaataatttCTGCTGTTTccaattttgttttttgttctacAGCAGTGCTGAGTTTGATGAGAATGATGCCAGCTACCAGAGAAAAATCACTTGTTATTCCTTGTGTAAAACGATTATCTAAGTCACCAAGTACAATTTGTtaactaataaacaaacaaacaattaacaGCAATATTACTGCTATAGTACTGTAATAACAGGCAAAGCAGATGCAACTGCAGGTAATGCAGCTTTAATGAGAAAAGTCACCAAATCCAAAACGATGAGCAAGTTCAGGGTCAAAAACAGAGTGGAAATATgttaatgcattcatttcaaATAGAGCTTCATCCTTTTGTTTACCTGGCTAATTTTAGTAACCATTTGACAGAGccatgtggagaaaaaaataaaatcatatggTTGCACCAGATCAAGGGCAAGTTGGCAAGTAACACCTTGTCACCAACAGTTGATAAATAATTCAACAAATTCACCTTATATCATATCATGAGAAGAGAGGGGATAGCCAGAGAGGCACTACTACCTAAAGTACTTAAAGTGCTTTAGTAATACTATAGCAGTACTATCTAAGCATAgcattgtttattttctattgtgtttttttgttgttgtgtttattttctgcaaCCAATTTTACAACCAGCAGTACCGgcACCATCTGGTACAGGAACTGCAGTGATGAGGACTGCAAAGCCCGGCTGAGCATGGTGAGTTCTGCTGAACAGATCACCAGGTGGTGCAGGACCAGAGCAGGAAAGATCTTCAAGTGTTCCACACACCCCATCTATGGACTGTTCCAATGGCTGCTGTCTGGAAAGTGCCTCTGCAACCACATGGCCAGGATGGAGAGACTAAGGAGGAGCTTCTTTCCCCAAGCCATCACAACCCTTAACTCATGACCACCAACACCCTCCAGCTCCTCTGCACATGACATTAACGTAGACACAGCCCCTGATCATGCATGTCACATATGGCACACCTGGCATACTTGCACATGCATAGGACACTTTAgtgtatatacaccgatcagccataacattatgaccacttgcctaatattgtgttggtcccccttttgctgccaaaacagccctgacccgtcgaggcatggactccactagatccctgaaggtgtgctgtggtatctggcacaaaggcGCTAACAGCAGATCTTTTAAgtcccggccttccacatgatgtaaaagaaaatgtgatttatcggaccaggccaccttcttccattgctccatggtccagttctgatgttcacctgtccattgtaggcacttttggcagtggacagaggtcagcatgggcactctgactggtctgtggctacacagccccatatgcagcaagctgcgatgcactgtgtgttctgacacctttctatcatagccagaattaacttttcagcaatttgtgctacaacagctcttctgtggaatcagaccagacggactagccttcactccccacgcgcatcagtgagccttgggcgctgTAACCCTGTCactagttcactggttgtccttccttggaccacttttggtaggtactaaccactgcataacgggaacacctgtacatcagcacattcatgcagttaccTAATcggccaatcatgtagcagcagtacaatgcaaaaatcatgcagatacaattcaagagcttcagttcattttcacatcaaacatcagaatcaagaaaaagtgtgatctctgtgactttgattatggcatggatattggtaccagaagggctggtctgagtatttcagaaactgctgatctcctgggaatttcacatacaacagtctctagagattacacagaatggtgcaaataataaaaaacattgagtgagtgacagttctgggggtggaaacaccttgttgataagagaggccagaggaaaatggccagaatATGGTTCGAGCTGGCAGGAAGGATATAGCAACTCATATAATCACCCTTTACAAccttggtgagcagaaaagcacctcagcatgaacaaaacattaaatcttgaggtggatgggcttcAACAGAAGAaaaccacactgggttccactcctgtcagccaagaacaggaatctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134989 True 4020 lncRNA 0.39 2 13124566 13129589

Neighbor

gene id symbol gene type direction distance location
LOC113529411 hnrnpa0b,LOC108269291,LOC107593199,LOC107740138,LOC107680986,LOC107554845 coding downstream 61134 13062338 ~ 13063432 (-)
hspa9 hspa9,LOC106604950 coding downstream 219713 12861650 ~ 12904853 (-)
spdl1 spdl1 coding downstream 461617 12581456 ~ 12662949 (-)
atoh8 atoh8,LOC107677004,LOC107753212,LOC107571829 coding downstream 575273 12527491 ~ 12549293 (-)
btk btk,LOC107554824 coding downstream 631767 12437839 ~ 12492799 (-)
elf1 elf4 coding upstream 1039246 14168835 ~ 14208465 (-)
trnae-uuc_1 NA coding upstream 1079327 14208916 ~ 14208987 (-)
drp2 drp2,LOC107724836 coding upstream 1117483 14247072 ~ 14383606 (-)
cenpi cenpi coding upstream 1254150 14383739 ~ 14398448 (-)
tmem35 tmem35a,tmem35 coding upstream 1276769 14406358 ~ 14408931 (-)
G114375 NA non-coding downstream 2947 13115749 ~ 13121619 (-)
G114313 NA non-coding downstream 65883 13057705 ~ 13058683 (-)
G114314 LOC107721237 non-coding downstream 94446 13029858 ~ 13030120 (-)
G114302 NA non-coding downstream 108695 13014572 ~ 13015871 (-)
G114299 NA non-coding downstream 111722 13012617 ~ 13012844 (-)
G114390 NA non-coding upstream 60397 13189986 ~ 13190226 (-)
G114386 NA non-coding upstream 64066 13193655 ~ 13198200 (-)
G114451 NA non-coding upstream 376905 13506494 ~ 13506701 (-)
G114455 NA non-coding upstream 403399 13532988 ~ 13533294 (-)
G114458 NA non-coding upstream 407637 13537226 ~ 13537527 (-)
fbxo38 fbxo38 other downstream 96611 12934557 ~ 13027955 (-)
G114215 NA other downstream 429057 12694771 ~ 12695509 (-)
G114097 NA other downstream 606372 12516358 ~ 12518194 (-)
timm8a timm8a,LOC107742474,LOC107680336,LOC107593201 other downstream 619756 12500940 ~ 12504810 (-)
G114013 NA other downstream 700509 12423728 ~ 12424057 (-)
G114460 NA other upstream 417923 13547512 ~ 13550775 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683,LOC107593230 other upstream 712030 13841619 ~ 13915588 (-)
G114873 NA other upstream 1090727 14220316 ~ 14221855 (-)
ebf1a ebf1,ebf1a,LOC105011268 other upstream 1540600 14670189 ~ 14775493 (-)
tmsb2 NA other upstream 1951195 15080784 ~ 15082504 (-)

Expression


Co-expression Network