G114386


Basic Information

Item Value
gene id G114386
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 13193655 ~ 13198200 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU135011
TTGAGGCATTTTTGTCAGGGAGAACTCATGGAATAATTGGCaaaagaattttcactgtaTGACTTCCCTACAGCTCATGTACGTCATGTCACATTCCAGCACTtcgtgcttggacccctaataacaataataatcctCCCAAAAACAATAGGGTCTTTCACACCCTTGGTGCATGGACACTAATGAAATGACCTAGGAGAAGAGGTGAGAAAAGGGCCAAAAGGCTGAGGGAAACATGTCTCTGCTGAGAAATCTAATTCCGGTCTTACAGATAGTTCACACAATCAAACACTATTTTTCTCATAGGTAAGAGAAAAATCACATGGTATAGGCATGGATTAAAATGTGTCATAACACTGAACAATTTTCTACAGCCTGATAAAATAACAGCATTGATATTTATTTGGATATGAAATATGGTCAGTGTTATGTGCAGTTTGATTCATCTCATTTAATCAAAAAGCATACTTGATGAGAGTAAACCATTAGAACTGTTTAACATGTAAATTGTCTCTGTAATATGCTAATAGACTAAGAATATAAATAGGATGCAGGCCCGTGAATCTGCTGCAGACATTAGAAGACTAAACAGGCTTTAACACTGATATCAAGCAGTGGTTCCTTACAAGAGATTAAcctgttcttttcttttgagCTGCACACTTCACAGATGGTTCATATGATTTGGGTTGGAATGTGATGACACGACTCATGCTTTGCAATAAAGCCTCTTGTGTGTCCCTGGCTTTCCATCcttgataaaaaataaactccATTATTACTGAAATACAGGAGAAGATCTCCACAAAACTATTATAGAAGTTATTATAGAAGAGACATGGTGAAACTACTTGCTTTTACTGATAAGAAATAGTGCttgaaaaaaatcagcagcaTGAACAGGTATTTAGAGTCATGATATCATGCCAGCCAAATCAAACCATTTCCATAGCTCAGAAATGATTTGACCTTTGGATGATTATACACCaatttccccattttttttctcctttctcaaTTTGCATTAAGCCTCATTCTATAAAGAGCtaaatataaagttttataattTGTCTAAGCAATTGTCCTTGAAGTGCTTCACCCTGTGTTCAGTGGATGAAGGGATTAATATGTGCCaagttatatttttatctgCATTACTGAGTGTTTGATTACACAATGCAACAGGTGGACTGTTCATTAGGGCAAAATTTTAAAGGTACAATGTGCAGGACAATGAGGCTCCTTGACAAGTAGCTCATCCTATAATTGTGTGCCTGTCATTTTCCAAGTATCCCAtttcctctttaaaaaaaaccaaaaacaagcaGCACATTAGCTTCTAAATTAGAGCAGCCGTGTTTCCATGCTACCTGCTCTATGTTGGTACATGCCAAACAAAAGGCCCTCCAGCCATAGGCAGCAGAGTCTTACTGACGAGGTCAGACAGGTCTTTATCTACACCTGAGATTAACCTGTGTAAAATAAAGGCATATATGGTGTGTTTGTAGTGTTGGGCTTTACAGCTGAGTGGGGAAAAGACTTGAAGAGACAGTCACCATTTGGGTAATAATGGGGACAAATACAGAATTAAAACTTTCCCATTTAACTGCCGATGACTTCAGAGGGTTACAATATTAGAGTCAACTAAGTGACTGACCTTGTTTGTGTCTATGCTTGTGTTTAGAGCTGGAATAGAGAAACACTCCCATCCTTAATATCTGTCtcataaaatgttttgaaatctctcatgtaaaaattacatttctgtaaaaagaGAGTGTACTGGAGTGTCCAATTAAAGCAGCCAAGATGAACACTGTTAAAATACAATGCTTCCTTGCTAATTAAGTGAAAACGAACAGTGTTCCTGCTTGTACTACTTGAGGCTGGTGTACACAATAGAATAGTAGACATCATGTCTGTATGACTGTCATTTTGTGCAGTTGGTTTTTGCTCCTCAAATGCGCAAATATAAACCATTTTGGAAGAAGCACTATAGaccaaatgatttttttccttccacaTAAAAACAAAGCAGTTGATTCAGTTTACAAAGCTACTTCTTCTGCAACTGTGTGCTCTTATTTTGTTCCATATTCCCATCTTGGGTATAACACAACTAGGGCTGTACCGTATGCAAGTCTCGCAATTCGATACATCTGTATCAAACAATGCATCAAGcagactgcataataaagtagcctattcatcataaaatacagattatattatttgaaatgtaaCGAACACTTAATCAAACCACACTGTCTCCTCTGAAAAAGCAACTTCTATATCTCGAATCAAAAGAGGCTAcagggatttttattttatttatttatttatttttttaaagtgtttctcCTAAGCATGCTGTTTTTCACAATACAATAGCATACTAGCTTACTAGGTCCTAGGGTAAGTAGCAAGCAGGAGCTGGAAGAGTCCCCAAATCTTTAAGGTCTATAAAGGAGCACTTTGTTAATTCATGATAAAGCACATTAATGAAACAGTCTACAGTAATAAATGAGTTGACTATAAATCTCCAATTATTGCAAATCATGAAAAGTATATTTAACATGAAATATGTCTCAAGaacaataaacactataaatagAGTtggatttttaacatttatagagtTTGTTGTCTGGAACGTTATTCCTGCTTGTAGTTCAGAACACTAACCGAGGGTTAAGGGTCAATGTATacattttcctattttttttatgcCAAGCTGTGCATGATTCTATGGATATATTCTATGGATAGATTCTATGCATGATTCTAAATTTCACAAGAGCACAAGGCTTTCACATTCTTAACAAGCTGAAGCATCCTTAACCTTTTTTCTATGTATATCAAAACATTCTGATTACATGCTCATATTTTTAGATGAGAATAGGAGGTTGTTCCAGAAcctttttgggttttttttaaagcaaactcTAATTTGGTCTTCCTattttgaggcttaccagtgATTTACATCTTATGGTAAACCCACAGTATTTAGTCTGGTGaaggcttgcttcactggcagtgacagctctttagACTTCTGAGAGTTAACAGTAACAGATTTTAAACTACTTTTAGCCAATTTTAAACCACTCTAGagcttttatctgcttacttgtacgtgaaataatgaaggaataacACATACCTAGCCATGGAACAGCTAagcagccaattgtccaattacttttggtcccaaaagtgctgtaattcttATTGCATTCACCAGATTTGGATGCAACTACCCTCAATTATTTAGTTTGACTGTGAAGGAAAACACTCGttctctgttattattattattactattattattattattattattattattaaattagaCTAGCTCTTctgattttataatattatttattatttagtgcATTTGTGAAGCAacacatttgatttttattattattattccacctGAAATTCTGCATGTGTCTCCTCTTACAGTTTTTGAGATATCGACACCAAAATAAGTGtgtttgtatagagcttttggAAATATTCTTCCATTCTCCTGCTACTACTTTTTCATTCCTTTTCCCCATTCACTgaattggactttttttttttttttaactgctcaAATTTGTTCAATTCTTAAGCTACAACCACCTAAATTCACATGGTCAAACCAGGGTGCAGCAGGAATTGCAGTGCCAATTTACACTGCCCTCATCCTTCTCTTTTAATTCATCCATCTTTCTTCCCCCAATTCATTTCCATGGAGGGGAATCTAGAGCAGGTGAAATCACTGTTGCTCTAGGGTGAGTGTTCATTTGTCTGTATTCACTGTCAGCAAGACATTTTTGTCTAAAATCCTTATACTTTCACCTAGAAACTCCAttcaagctttaaaatgttcagCTACTCCCCCATTCAGAAACTTGTAAATATCTAACAGATTCTAACTACATTTTTCAAGTTATGAACATTTGTCTGACACTAGGGCAAGTCAAGACCCCTACTGACAAGCTTGCGCTTTTCTTTAATGTTAATTTCTCTGTGTTTAAACAGTCAAACTAATCCAGGTCAATCTACACATTTGTGGTTGGATATTGATCAGCAAGTGCTCCTGTCACTAACCATGTAATTAGGTAAGCGATTTGGTGAATATTTTCAGAGTTTTGAGCATTTGAAACTAGCACTTGCATAGTCTTTTATAGGCATGCCTCTTAAAGGAGcctttttctcccattttttcAAACTGTCATAAATCAAACAATTCCAGCTGATACTACACATATTAGGCATCAAACTGATTGATTGGATCTCCTGACACTAATCATGTAATTAACTAAGTGATTTGTTGAACATTTTGCAAGTATTAATTGGTCAAGTATTGCAAGTATTAATTGATGTAGCTAAGCAGTGGGAATATGAGTATAGCAGGATGTACAGCAGTGGGATTTGTAGACCTGTTACCAGGCAGGATAATGGtcaataacagaaataatatgATGGCCCACCTGCAACAGTTTTCAAGTGCAATGTGATTACAGTGCCCGAGAAGTAGAAAATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135011 True 4546 lncRNA 0.36 1 13193655 13198200

Neighbor

gene id symbol gene type direction distance location
LOC113529411 hnrnpa0b,LOC108269291,LOC107593199,LOC107740138,LOC107680986,LOC107554845 coding downstream 130223 13062338 ~ 13063432 (-)
hspa9 hspa9,LOC106604950 coding downstream 288802 12861650 ~ 12904853 (-)
spdl1 spdl1 coding downstream 530706 12581456 ~ 12662949 (-)
atoh8 atoh8,LOC107677004,LOC107753212,LOC107571829 coding downstream 644362 12527491 ~ 12549293 (-)
btk btk,LOC107554824 coding downstream 700856 12437839 ~ 12492799 (-)
elf1 elf4 coding upstream 970635 14168835 ~ 14208465 (-)
trnae-uuc_1 NA coding upstream 1010716 14208916 ~ 14208987 (-)
drp2 drp2,LOC107724836 coding upstream 1048872 14247072 ~ 14383606 (-)
cenpi cenpi coding upstream 1185539 14383739 ~ 14398448 (-)
tmem35 tmem35a,tmem35 coding upstream 1208158 14406358 ~ 14408931 (-)
G114390 NA non-coding downstream 3429 13189986 ~ 13190226 (-)
G114364 NA non-coding downstream 64066 13124566 ~ 13129589 (-)
G114375 NA non-coding downstream 72036 13115749 ~ 13121619 (-)
G114313 NA non-coding downstream 134972 13057705 ~ 13058683 (-)
G114314 LOC107721237 non-coding downstream 163535 13029858 ~ 13030120 (-)
G114451 NA non-coding upstream 308294 13506494 ~ 13506701 (-)
G114455 NA non-coding upstream 334788 13532988 ~ 13533294 (-)
G114458 NA non-coding upstream 339026 13537226 ~ 13537527 (-)
G114459 NA non-coding upstream 339346 13537546 ~ 13537774 (-)
G114476 NA non-coding upstream 385307 13583507 ~ 13583743 (-)
fbxo38 fbxo38 other downstream 165700 12934557 ~ 13027955 (-)
G114215 NA other downstream 498146 12694771 ~ 12695509 (-)
G114097 NA other downstream 675461 12516358 ~ 12518194 (-)
timm8a timm8a,LOC107742474,LOC107680336,LOC107593201 other downstream 688845 12500940 ~ 12504810 (-)
G114013 NA other downstream 769598 12423728 ~ 12424057 (-)
G114460 NA other upstream 349312 13547512 ~ 13550775 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683,LOC107593230 other upstream 643419 13841619 ~ 13915588 (-)
G114873 NA other upstream 1022116 14220316 ~ 14221855 (-)
ebf1a ebf1,ebf1a,LOC105011268 other upstream 1471989 14670189 ~ 14775493 (-)
tmsb2 NA other upstream 1882584 15080784 ~ 15082504 (-)

Expression


Co-expression Network