Gene
RNA
| Item | Value |
|---|---|
| gene id | G114390 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047601.1 |
| NCBI id | CM018547.1 |
| chromosome length | 30450434 |
| location | 13189986 ~ 13190226 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| description |
|---|
| PREDICTED: cell wall protein PRY3-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU135015 | True | 241 | lncRNA | 0.39 | 1 | 13189986 | 13190226 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113529411 | hnrnpa0b,LOC108269291,LOC107593199,LOC107740138,LOC107680986,LOC107554845 | coding | downstream | 126554 | 13062338 ~ 13063432 (-) |
| hspa9 | hspa9,LOC106604950 | coding | downstream | 285133 | 12861650 ~ 12904853 (-) |
| spdl1 | spdl1 | coding | downstream | 527037 | 12581456 ~ 12662949 (-) |
| atoh8 | atoh8,LOC107677004,LOC107753212,LOC107571829 | coding | downstream | 640693 | 12527491 ~ 12549293 (-) |
| btk | btk,LOC107554824 | coding | downstream | 697187 | 12437839 ~ 12492799 (-) |
| elf1 | elf4 | coding | upstream | 978609 | 14168835 ~ 14208465 (-) |
| trnae-uuc_1 | NA | coding | upstream | 1018690 | 14208916 ~ 14208987 (-) |
| drp2 | drp2,LOC107724836 | coding | upstream | 1056846 | 14247072 ~ 14383606 (-) |
| cenpi | cenpi | coding | upstream | 1193513 | 14383739 ~ 14398448 (-) |
| tmem35 | tmem35a,tmem35 | coding | upstream | 1216132 | 14406358 ~ 14408931 (-) |
| G114364 | NA | non-coding | downstream | 60397 | 13124566 ~ 13129589 (-) |
| G114375 | NA | non-coding | downstream | 68367 | 13115749 ~ 13121619 (-) |
| G114313 | NA | non-coding | downstream | 131303 | 13057705 ~ 13058683 (-) |
| G114314 | LOC107721237 | non-coding | downstream | 159866 | 13029858 ~ 13030120 (-) |
| G114302 | NA | non-coding | downstream | 174115 | 13014572 ~ 13015871 (-) |
| G114386 | NA | non-coding | upstream | 3429 | 13193655 ~ 13198200 (-) |
| G114451 | NA | non-coding | upstream | 316268 | 13506494 ~ 13506701 (-) |
| G114455 | NA | non-coding | upstream | 342762 | 13532988 ~ 13533294 (-) |
| G114458 | NA | non-coding | upstream | 347000 | 13537226 ~ 13537527 (-) |
| G114459 | NA | non-coding | upstream | 347320 | 13537546 ~ 13537774 (-) |
| fbxo38 | fbxo38 | other | downstream | 162031 | 12934557 ~ 13027955 (-) |
| G114215 | NA | other | downstream | 494477 | 12694771 ~ 12695509 (-) |
| G114097 | NA | other | downstream | 671792 | 12516358 ~ 12518194 (-) |
| timm8a | timm8a,LOC107742474,LOC107680336,LOC107593201 | other | downstream | 685176 | 12500940 ~ 12504810 (-) |
| G114013 | NA | other | downstream | 765929 | 12423728 ~ 12424057 (-) |
| G114460 | NA | other | upstream | 357286 | 13547512 ~ 13550775 (-) |
| pcdh19 | pcdh19,LOC107680972,LOC107740148,LOC107688683,LOC107593230 | other | upstream | 651393 | 13841619 ~ 13915588 (-) |
| G114873 | NA | other | upstream | 1030090 | 14220316 ~ 14221855 (-) |
| ebf1a | ebf1,ebf1a,LOC105011268 | other | upstream | 1479963 | 14670189 ~ 14775493 (-) |
| tmsb2 | NA | other | upstream | 1890558 | 15080784 ~ 15082504 (-) |
