G114460


Basic Information

Item Value
gene id G114460
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 13547512 ~ 13550775 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU135100
GAATGATGACCACTGGTTTGGACAAGGTCAAAGCAGAGGTGGGCTACAAGATCGACTTCTCCTCTGGCACAGCTAAGAAGAAGGCGCTTGACAAGTGGAGAGATCAGTGGAGAGAGAAGAATGTCAGGGATACAGACTTATGATGACTGCACGAGTCCATGTGGGCACAAGCCCACATTTTCGGACCTGTCACCCCTACTTCAGATTTTGCACACTCACAGCAAGGCTGTTTGTCTTTCTGGAATGACCCAGAACCCTGTTAGCCATGTGTAGTGCAAAAGTCCCTACTACACCTTCGTAAACCCAGGAAAGAATGTGTGAGGTCCTCACACATGTGGTAGTCATAACATAGACACAGGTGGCTGCGATGGAAGCTCAGATGAGATAGCAACATCAATCACCTGCCTGGTAGACATCCAGAGCAAGAAAAATAACAGCTTCCGATATCCATGCCATTGCGTCCACCAGTGTTGCCAGACCATGGGGGGCTGGCAGCCTGCGAACAGAAGAAATACAACGCTCCTCGCACGACTGCCTTTTTCTTTTGGACAGCCAGAGTGTGCAGAAATTCAGCACGGCTGGCGCCCAATCATTGGCGCAGTGCTAATCTACCCTCACAGGGGCGACAGGGAGGTATAAAAGGAGCCAGCAGCCGCTCTCAGGAAAAAGGTAGGCGCACCTTATGGCCTTACTAATGTGTGCTCTATTTTTTCCTCTAGACATAGACATCAGCGCTGATGAGCAACCACTGCCTGAGCCTGCCGATCTCCGCCTCTGGGTGTCTGTGCTCAGCCCATCTGTGACCTCTCGTTGCTACAGTTTACAATATATTCCTCATTTCCTGAAGTAGGGACATCACCTGATGGGCTTATTCACTGCAAATGTGGGAAAGGCTGTCTGGAATTCAAATGCACATATAAGTACCACAACAACTCCATCCTGCAGGACTGTGCAGATGACAGCAACTTTTGTCTCCAGCTAACTGATGGGAAGTTAAACTTGAAGCGGACACACCAGTACTACAGTCAAGAACAAACGCAGATTTTTGTGACTGGGTCAGAGTTTTGTGACTTTGTAGTGTGGATGCAGAAAGACTGTGCTGTGGTTCAGATCTTACTGGATGTGGACTTCTGGACAACACTTCTGATGAAGGCACAGGAGTTCTTCCACAAAGTTTCACTATCCATGCTTGTGGCTTGTTACTACACCCGAGCAGCTTACACAGCGCCACATGCTTTAACCGGGTTACAGCCATCTCAAACAAGAAGGCCAAGAAAACAGGCACTAGAAAACATAAACGAACTGTGGTGCCTTTGCAGAGGGCCTGAAGACCAGGATGACATGGTGGCTTCTGACAACGAAAACTGTGGTTCCACCTCAGCTGTGTGGGACTCAGTCAGGCACCTTCAGCAAGTGTGCCCTGGCTCTGTGCCACATGCACACAGATAAACTAAAACAGTGGAGcacaactgtgtgtttgtatctaTATATTCCTTTTTGATTGCTGAACAGACACTTTTTTGTTCAATAGTTTTGTCtttaatttgctgttttttatttaaatttacatgtTGTTTCAATACAATAGGTTTTCATTTTGCCTTTTGTATTTAacttgtttacttatttattgcCTTTTTTATCTCAGTTGTTGGTACTTGAAGGTTACACTACCACATTACTTCTTATACCTATTGTATTTGCACTACATTGATACTGTGAACCTTTCAGTGCAATAGGTTTTCAATTTACCTTTTGTATTAACTTGTTTacttatttgcctttttttatcTGTTGTTAGTACTTGAAGTTTACACTGCCATTTTACCTCTTTTAACTGTTGTATTTATGTTACTGTGAACTGTACACATTTACTTCAGCATACTatgttatacaaataaagagATTCAGAATTGAAATACTTTTTCACATGTGGTATGCAACATATGAATAATGCTGTTAATGCAGGATATGCAGTTCATATTTAGTTAACATTCTTTATGTCATGATTTACACTTTCATAACAACACTGGGGCACATTTTAGTCAAGGCATAGCACACAGGCACAATCTTGTCAAGGAATATCATGTCCTTGCCTTCATATGGGAGTACCATGCTCACTGGTACAGTCTCACTTAGTATGGTGTACTTGGTGAGTACACATCCAATCACCCTCTCCACATGGACCCTGAGGTGACCTATCTGGTGTGTCTCCTCCTATCTGGTGGATCTTTTGCATCCAGCTGGCAGCATCCTCTTGTGAATGCAGGGATTTTCACTACTGCCCACATTAGTCTGACACTGTCCCTGATGTCAAATCCACGATCCGCCAACACCAAGTCTCCAGGCAATAGTTTATTAAGAAGGCCACTATTCTCAGTCATATGCTTGTCACTGACATAACCTCCCCACTCTTTGGAAATGAAAGAGATAGCTCCCTGTGGTGTAATGCCAGTGAGATACTTTAaggtgtgcttgtgtttgtagTGGGTAAATGTCTATGCTCTAGCTTTCAGATTTGATGCTCTCTCAGTGTTAATTTCAAAGCAGTCCACAATAACGGCAACAAGATTGCCTAAAGCCTCCATAAACTGATGTGGCATGCTGCCTAGCAAGCAATGTCTCTGGCCTGTGCACTAAAGGGCTAAGGTATGTAAACATTGTACCTATGATGTCTCTGAACATGGTGGACACAGTCTTTCAATCTTTTCAGTAGAGGTGTGCAATGTGCTGGATTGGCAGATTCAGCCTCAGGCACATCAGAGTTAAAAAAAGCATCTGAAAAGGTGAAAGCTTTCGGCCTGTCTGTAGTAGGCAAGGAAGAAGCTGCGACACCCATCATAACAGCAAAACATGGAAGCCCAGTGTAGTACTTGACCTTCACATCATCTTTCAAAAAATGCTCATCCATCTTCTTTTGGGAGAACTCTTCCTTCAGTATCCTGTTCGCCTCCAACAAGTGGTTAATTTTGGAACGGCTACGGCTACAAAttcctgctgttcttcagtGTTGTCCTTTGGTGCAGCTTCATTCATCTGTGACCTCTGTGAAGCTTCATCTGGTGGTGCAGCTTCATCTAACTCTAATCTCTGGCCAGCTAGACCCGATGGTGTCGGAGGTGCATTGTTGTTTCCTGTGAGACCTTGCTGTCTCTTTGTCCTCCCATTAAACCCCCCAGAGTACATTTCTTTGATTTCTGCATGCCCGTAATGATGGTATCCATTCGGGATGACACTCATTTCATAGGCTGgttttcctggaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135100 True 3264 TUCP 0.44 1 13547512 13550775

Neighbor

gene id symbol gene type direction distance location
LOC113529411 hnrnpa0b,LOC108269291,LOC107593199,LOC107740138,LOC107680986,LOC107554845 coding downstream 484080 13062338 ~ 13063432 (-)
hspa9 hspa9,LOC106604950 coding downstream 642659 12861650 ~ 12904853 (-)
spdl1 spdl1 coding downstream 884563 12581456 ~ 12662949 (-)
atoh8 atoh8,LOC107677004,LOC107753212,LOC107571829 coding downstream 998219 12527491 ~ 12549293 (-)
btk btk,LOC107554824 coding downstream 1054713 12437839 ~ 12492799 (-)
elf1 elf4 coding upstream 618060 14168835 ~ 14208465 (-)
trnae-uuc_1 NA coding upstream 658141 14208916 ~ 14208987 (-)
drp2 drp2,LOC107724836 coding upstream 696297 14247072 ~ 14383606 (-)
cenpi cenpi coding upstream 832964 14383739 ~ 14398448 (-)
tmem35 tmem35a,tmem35 coding upstream 855583 14406358 ~ 14408931 (-)
G114459 NA non-coding downstream 9738 13537546 ~ 13537774 (-)
G114458 NA non-coding downstream 9985 13537226 ~ 13537527 (-)
G114455 NA non-coding downstream 14218 13532988 ~ 13533294 (-)
G114451 NA non-coding downstream 40811 13506494 ~ 13506701 (-)
G114386 NA non-coding downstream 349312 13193655 ~ 13198200 (-)
G114476 NA non-coding upstream 32732 13583507 ~ 13583743 (-)
G114529 NA non-coding upstream 120481 13671256 ~ 13671490 (-)
G114534 NA non-coding upstream 128532 13679307 ~ 13679518 (-)
G114707 NA non-coding upstream 358193 13908968 ~ 13909921 (-)
G114729 NA non-coding upstream 424950 13975725 ~ 13975926 (-)
fbxo38 fbxo38 other downstream 519557 12934557 ~ 13027955 (-)
G114215 NA other downstream 852003 12694771 ~ 12695509 (-)
G114097 NA other downstream 1029318 12516358 ~ 12518194 (-)
timm8a timm8a,LOC107742474,LOC107680336,LOC107593201 other downstream 1042702 12500940 ~ 12504810 (-)
G114013 NA other downstream 1123455 12423728 ~ 12424057 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683,LOC107593230 other upstream 290844 13841619 ~ 13915588 (-)
G114873 NA other upstream 669541 14220316 ~ 14221855 (-)
ebf1a ebf1,ebf1a,LOC105011268 other upstream 1119414 14670189 ~ 14775493 (-)
tmsb2 NA other upstream 1530009 15080784 ~ 15082504 (-)
apln apln other upstream 1966279 15517054 ~ 15540726 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000396_00142247_00146404 NA coding CI01000396 null 141940 ~ 147351 (-)