G114529


Basic Information

Item Value
gene id G114529
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 13671256 ~ 13671490 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU135171
CATTTTTGCTAATGCTATTTTGTCAGCTTATCTGAGTCGGTGTGCTTTTGCATAACTGAAACAGTATAGCCTCTCACTGACCCGTACTAACTAGAGAAGTGACTCCGTCAGATCGTACATTAAAAGTGATTGACATGCTAAAGATAATAAATGGTATTTGTTGCTGTCCCCaaattgttctgttttgttgagGTGTAAGAAGGAATGGGCTGTTTCTGTACATTTGCTGTTTAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135171 True 235 lncRNA 0.38 1 13671256 13671490

Neighbor

gene id symbol gene type direction distance location
LOC113529411 hnrnpa0b,LOC108269291,LOC107593199,LOC107740138,LOC107680986,LOC107554845 coding downstream 607824 13062338 ~ 13063432 (-)
hspa9 hspa9,LOC106604950 coding downstream 766403 12861650 ~ 12904853 (-)
spdl1 spdl1 coding downstream 1008307 12581456 ~ 12662949 (-)
atoh8 atoh8,LOC107677004,LOC107753212,LOC107571829 coding downstream 1121963 12527491 ~ 12549293 (-)
btk btk,LOC107554824 coding downstream 1178457 12437839 ~ 12492799 (-)
elf1 elf4 coding upstream 497345 14168835 ~ 14208465 (-)
trnae-uuc_1 NA coding upstream 537426 14208916 ~ 14208987 (-)
drp2 drp2,LOC107724836 coding upstream 575582 14247072 ~ 14383606 (-)
cenpi cenpi coding upstream 712249 14383739 ~ 14398448 (-)
tmem35 tmem35a,tmem35 coding upstream 734868 14406358 ~ 14408931 (-)
G114476 NA non-coding downstream 87513 13583507 ~ 13583743 (-)
G114459 NA non-coding downstream 133482 13537546 ~ 13537774 (-)
G114458 NA non-coding downstream 133729 13537226 ~ 13537527 (-)
G114455 NA non-coding downstream 137962 13532988 ~ 13533294 (-)
G114451 NA non-coding downstream 164555 13506494 ~ 13506701 (-)
G114534 NA non-coding upstream 7817 13679307 ~ 13679518 (-)
G114707 NA non-coding upstream 237478 13908968 ~ 13909921 (-)
G114729 NA non-coding upstream 304235 13975725 ~ 13975926 (-)
G114739 NA non-coding upstream 317080 13988570 ~ 13988810 (-)
G114761 NA non-coding upstream 363152 14034642 ~ 14034895 (-)
G114460 NA other downstream 120481 13547512 ~ 13550775 (-)
fbxo38 fbxo38 other downstream 643301 12934557 ~ 13027955 (-)
G114215 NA other downstream 975747 12694771 ~ 12695509 (-)
G114097 NA other downstream 1153062 12516358 ~ 12518194 (-)
timm8a timm8a,LOC107742474,LOC107680336,LOC107593201 other downstream 1166446 12500940 ~ 12504810 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683,LOC107593230 other upstream 170129 13841619 ~ 13915588 (-)
G114873 NA other upstream 548826 14220316 ~ 14221855 (-)
ebf1a ebf1,ebf1a,LOC105011268 other upstream 998699 14670189 ~ 14775493 (-)
tmsb2 NA other upstream 1409294 15080784 ~ 15082504 (-)
apln apln other upstream 1845564 15517054 ~ 15540726 (-)

Expression


Co-expression Network