G114534


Basic Information

Item Value
gene id G114534
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 13679307 ~ 13679518 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU135176
ggtggccccatatggacggcctgaagaaccatttggtttgctggggatagtgccacctgggggctgtggagatggcttggggatcacatatggggagctgtactgtaatggcttgggactgtgattgctgtggtggctttggggctgcggttgccatgagcaccttcgtactcaggactccatcagtggacagtggatagattttaaccaac

Function

GO:

id name namespace
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0003824 catalytic activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU135176 True 212 lncRNA 0.55 1 13679307 13679518

Neighbor

gene id symbol gene type direction distance location
LOC113529411 hnrnpa0b,LOC108269291,LOC107593199,LOC107740138,LOC107680986,LOC107554845 coding downstream 615875 13062338 ~ 13063432 (-)
hspa9 hspa9,LOC106604950 coding downstream 774454 12861650 ~ 12904853 (-)
spdl1 spdl1 coding downstream 1016358 12581456 ~ 12662949 (-)
atoh8 atoh8,LOC107677004,LOC107753212,LOC107571829 coding downstream 1130014 12527491 ~ 12549293 (-)
btk btk,LOC107554824 coding downstream 1186508 12437839 ~ 12492799 (-)
elf1 elf4 coding upstream 489317 14168835 ~ 14208465 (-)
trnae-uuc_1 NA coding upstream 529398 14208916 ~ 14208987 (-)
drp2 drp2,LOC107724836 coding upstream 567554 14247072 ~ 14383606 (-)
cenpi cenpi coding upstream 704221 14383739 ~ 14398448 (-)
tmem35 tmem35a,tmem35 coding upstream 726840 14406358 ~ 14408931 (-)
G114529 NA non-coding downstream 7817 13671256 ~ 13671490 (-)
G114476 NA non-coding downstream 95564 13583507 ~ 13583743 (-)
G114459 NA non-coding downstream 141533 13537546 ~ 13537774 (-)
G114458 NA non-coding downstream 141780 13537226 ~ 13537527 (-)
G114455 NA non-coding downstream 146013 13532988 ~ 13533294 (-)
G114707 NA non-coding upstream 229450 13908968 ~ 13909921 (-)
G114729 NA non-coding upstream 296207 13975725 ~ 13975926 (-)
G114739 NA non-coding upstream 309052 13988570 ~ 13988810 (-)
G114761 NA non-coding upstream 355124 14034642 ~ 14034895 (-)
G115100 NA non-coding upstream 788732 14468250 ~ 14474465 (-)
G114460 NA other downstream 128532 13547512 ~ 13550775 (-)
fbxo38 fbxo38 other downstream 651352 12934557 ~ 13027955 (-)
G114215 NA other downstream 983798 12694771 ~ 12695509 (-)
G114097 NA other downstream 1161113 12516358 ~ 12518194 (-)
timm8a timm8a,LOC107742474,LOC107680336,LOC107593201 other downstream 1174497 12500940 ~ 12504810 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683,LOC107593230 other upstream 162101 13841619 ~ 13915588 (-)
G114873 NA other upstream 540798 14220316 ~ 14221855 (-)
ebf1a ebf1,ebf1a,LOC105011268 other upstream 990671 14670189 ~ 14775493 (-)
tmsb2 NA other upstream 1401266 15080784 ~ 15082504 (-)
apln apln other upstream 1837536 15517054 ~ 15540726 (-)

Expression


Co-expression Network