G114707


Basic Information

Item Value
gene id G114707
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 13908968 ~ 13909921 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU135363
aaatcattctcatggctggattgggaagtGTTGCAAGGTTGCAagggactttaacaggaaacatggcaagcacatacaaaaaaattaataaatgtgtgaatgcaGCCAGCATCCAAaggaaaaagtagaaaaaagtttaaaaaaatatttcagagaaaTCTGAACATTTATGAGAGTAGTAGTATTTCATGGGAATAATGATCCTCTTGGGAAAGTAGGGAAAGTCAGCTGGGAGAGATGTTTACAACACAAGCCTCGCTTACGAGCTCATAAGTTCATGTCCAGTGTGAAAGCAGTGCAGACAAAGCATGTTCTGTTGTCACTCATATAATGTCATTGCAATCAAATTATTGTGCATGAATTAGGAACAGCCATAGAGACATGTGctgaaaattttaattttaaaagacatAAGTGTGAATTGGAATTTGAATAATGTTGCTTACTCTCCTGATGGTGTTCAGTGTCGTTTGTCACTTTGTGTGCTGCTGTGGTCTAGCATGTTTGCATTGTGCAGCTTGTTTGTGACAAGTAAACCTGCAATGCATGGGACTGCAAACAAATCAGGAATGATGGCTCCATTGGTGGCCGGAGGTAACTTGACTGTGGCTTTGCCAGTGAGTCTCATACATTGCCAATGAGTCCAGGTCTGGTAGCAGAGTTGACATTGTGGCTGTGAGGGCTCTATTTTCATGCCGATGCAAGAATAAATTATTGATATAAAACTGATGGTTTGCTAGCATTGTTCAGCATAGACCATTTTTTCTTGTTCTCTCATGGTTGATATTTTTGTACTCAGAAACAAACAGACCTGCAGTGATGTGGGTGGAGGTGGAGTGGTGCAACAGGAGGTGTGACATTCAAAATTATATAtttttttttaatccaaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135363 True 892 lncRNA 0.39 2 13908968 13909921

Neighbor

gene id symbol gene type direction distance location
LOC113529411 hnrnpa0b,LOC108269291,LOC107593199,LOC107740138,LOC107680986,LOC107554845 coding downstream 845536 13062338 ~ 13063432 (-)
hspa9 hspa9,LOC106604950 coding downstream 1004115 12861650 ~ 12904853 (-)
spdl1 spdl1 coding downstream 1246019 12581456 ~ 12662949 (-)
atoh8 atoh8,LOC107677004,LOC107753212,LOC107571829 coding downstream 1359675 12527491 ~ 12549293 (-)
btk btk,LOC107554824 coding downstream 1416169 12437839 ~ 12492799 (-)
elf1 elf4 coding upstream 258914 14168835 ~ 14208465 (-)
trnae-uuc_1 NA coding upstream 298995 14208916 ~ 14208987 (-)
drp2 drp2,LOC107724836 coding upstream 337151 14247072 ~ 14383606 (-)
cenpi cenpi coding upstream 473818 14383739 ~ 14398448 (-)
tmem35 tmem35a,tmem35 coding upstream 496437 14406358 ~ 14408931 (-)
G114534 NA non-coding downstream 229450 13679307 ~ 13679518 (-)
G114529 NA non-coding downstream 237478 13671256 ~ 13671490 (-)
G114476 NA non-coding downstream 325225 13583507 ~ 13583743 (-)
G114459 NA non-coding downstream 371194 13537546 ~ 13537774 (-)
G114458 NA non-coding downstream 371441 13537226 ~ 13537527 (-)
G114729 NA non-coding upstream 65804 13975725 ~ 13975926 (-)
G114739 NA non-coding upstream 78649 13988570 ~ 13988810 (-)
G114761 NA non-coding upstream 124721 14034642 ~ 14034895 (-)
G115100 NA non-coding upstream 558329 14468250 ~ 14474465 (-)
G115143 NA non-coding upstream 630187 14540108 ~ 14540308 (-)
G114460 NA other downstream 358193 13547512 ~ 13550775 (-)
fbxo38 fbxo38 other downstream 881013 12934557 ~ 13027955 (-)
G114215 NA other downstream 1213459 12694771 ~ 12695509 (-)
G114097 NA other downstream 1390774 12516358 ~ 12518194 (-)
timm8a timm8a,LOC107742474,LOC107680336,LOC107593201 other downstream 1404158 12500940 ~ 12504810 (-)
G114873 NA other upstream 310395 14220316 ~ 14221855 (-)
ebf1a ebf1,ebf1a,LOC105011268 other upstream 760268 14670189 ~ 14775493 (-)
tmsb2 NA other upstream 1170863 15080784 ~ 15082504 (-)
apln apln other upstream 1607133 15517054 ~ 15540726 (-)
ndufa1 NA other upstream 1817729 15727650 ~ 15729388 (-)

Expression


Co-expression Network