G115143


Basic Information

Item Value
gene id G115143
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 14540108 ~ 14540308 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU135841
CCTCTGATATGCAGCAATTGATCCTTTTGTGACAAAGCTGCTTGAAACCTCACTCCTGGCAGTCAGACACCTAGGATAGGGTGCAGGATGGACCTCCACCAGTTTGATTTATGGATGACACCAGGCATGGTTGGCACAACCATGAGCAGACACATGAAATCAACCCTGTGAAAGCTAACAAGCCCTGGAAGGACCACAGGC

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU135841 True 201 lncRNA 0.50 1 14540108 14540308

Neighbor

gene id symbol gene type direction distance location
tspan7 tspan6 coding downstream 4151 14529981 ~ 14535957 (-)
mid1ip1l LOC108269374,LOC108427811,LOC107680990 coding downstream 11570 14526759 ~ 14528538 (-)
trnav-uac NA coding downstream 71483 14468553 ~ 14468625 (-)
cstf2 cstf2,LOC107688691,LOC107680996,LOC107740160 coding downstream 75509 14454809 ~ 14464599 (-)
arl13a arl13a coding downstream 116455 14416534 ~ 14423653 (-)
sytl4 sytl4 coding upstream 19926 14560234 ~ 14575623 (-)
trmt12 trmt12 coding upstream 35828 14576136 ~ 14585427 (-)
zbtb3 zbtb3 coding upstream 51316 14591624 ~ 14594659 (-)
clint1a clint1,LOC108427862 coding upstream 59805 14600113 ~ 14621406 (-)
rnf145a rnf145,rnf145a,LOC107723822,LOC107669103,LOC107664350,LOC107740095 coding upstream 245775 14786083 ~ 14823173 (-)
G115100 NA non-coding downstream 65643 14468250 ~ 14474465 (-)
G114761 NA non-coding downstream 505213 14034642 ~ 14034895 (-)
G114739 NA non-coding downstream 551298 13988570 ~ 13988810 (-)
G114729 NA non-coding downstream 564182 13975725 ~ 13975926 (-)
G114707 NA non-coding downstream 630187 13908968 ~ 13909921 (-)
G115325 NA non-coding upstream 205631 14745939 ~ 14747993 (-)
G115329 NA non-coding upstream 245021 14785329 ~ 14786018 (-)
G115331 NA non-coding upstream 263146 14803454 ~ 14804191 (-)
LOC113528719 NA non-coding upstream 467403 15007711 ~ 15016373 (-)
G115477 NA non-coding upstream 592889 15133197 ~ 15133435 (-)
G114873 NA other downstream 318253 14220316 ~ 14221855 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683,LOC107593230 other downstream 624520 13841619 ~ 13915588 (-)
G114460 NA other downstream 989333 13547512 ~ 13550775 (-)
fbxo38 fbxo38 other downstream 1512153 12934557 ~ 13027955 (-)
G114215 NA other downstream 1844599 12694771 ~ 12695509 (-)
ebf1a ebf1,ebf1a,LOC105011268 other upstream 129881 14670189 ~ 14775493 (-)
tmsb2 NA other upstream 540476 15080784 ~ 15082504 (-)
apln apln other upstream 976746 15517054 ~ 15540726 (-)
ndufa1 NA other upstream 1187342 15727650 ~ 15729388 (-)
G115842 dlg3,LOC107751999 other upstream 1310713 15851021 ~ 15852220 (-)

Expression


Co-expression Network