Gene
RNA
| Item | Value |
|---|---|
| gene id | G115329 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047601.1 |
| NCBI id | CM018547.1 |
| chromosome length | 30450434 |
| location | 14785329 ~ 14786018 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| id | name | namespace |
|---|---|---|
| GO:0005622 | intracellular anatomical structure | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0043227 | membrane-bounded organelle | cellular_component |
| GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU136097 | True | 690 | lncRNA | 0.36 | 1 | 14785329 | 14786018 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| clint1a | clint1,LOC108427862 | coding | downstream | 163923 | 14600113 ~ 14621406 (-) |
| zbtb3 | zbtb3 | coding | downstream | 190670 | 14591624 ~ 14594659 (-) |
| trmt12 | trmt12 | coding | downstream | 199902 | 14576136 ~ 14585427 (-) |
| sytl4 | sytl4 | coding | downstream | 209706 | 14560234 ~ 14575623 (-) |
| tspan7 | tspan6 | coding | downstream | 249372 | 14529981 ~ 14535957 (-) |
| rnf145a | rnf145,rnf145a,LOC107723822,LOC107669103,LOC107664350,LOC107740095 | coding | upstream | 65 | 14786083 ~ 14823173 (-) |
| il12ba | NA | coding | upstream | 55162 | 14841180 ~ 14854258 (-) |
| sh3tc2 | sh3tc2 | coding | upstream | 131978 | 14917996 ~ 14932160 (-) |
| pttg1 | LOC108268450 | coding | upstream | 253585 | 15039603 ~ 15042499 (-) |
| foxi3b | LOC108269392,LOC108427851 | coding | upstream | 265342 | 15051360 ~ 15053378 (-) |
| G115325 | NA | non-coding | downstream | 37336 | 14745939 ~ 14747993 (-) |
| G115143 | NA | non-coding | downstream | 245021 | 14540108 ~ 14540308 (-) |
| G115100 | NA | non-coding | downstream | 310864 | 14468250 ~ 14474465 (-) |
| G114761 | NA | non-coding | downstream | 750434 | 14034642 ~ 14034895 (-) |
| G114739 | NA | non-coding | downstream | 796519 | 13988570 ~ 13988810 (-) |
| G115331 | NA | non-coding | upstream | 17436 | 14803454 ~ 14804191 (-) |
| LOC113528719 | NA | non-coding | upstream | 221693 | 15007711 ~ 15016373 (-) |
| G115477 | NA | non-coding | upstream | 347179 | 15133197 ~ 15133435 (-) |
| G115553 | NA | non-coding | upstream | 532722 | 15318740 ~ 15318949 (-) |
| G115554 | NA | non-coding | upstream | 535002 | 15321020 ~ 15321301 (-) |
| ebf1a | ebf1,ebf1a,LOC105011268 | other | downstream | 9836 | 14670189 ~ 14775493 (-) |
| G114873 | NA | other | downstream | 563474 | 14220316 ~ 14221855 (-) |
| pcdh19 | pcdh19,LOC107680972,LOC107740148,LOC107688683,LOC107593230 | other | downstream | 869741 | 13841619 ~ 13915588 (-) |
| G114460 | NA | other | downstream | 1234554 | 13547512 ~ 13550775 (-) |
| fbxo38 | fbxo38 | other | downstream | 1757374 | 12934557 ~ 13027955 (-) |
| tmsb2 | NA | other | upstream | 294766 | 15080784 ~ 15082504 (-) |
| apln | apln | other | upstream | 731036 | 15517054 ~ 15540726 (-) |
| ndufa1 | NA | other | upstream | 941632 | 15727650 ~ 15729388 (-) |
| G115842 | dlg3,LOC107751999 | other | upstream | 1065003 | 15851021 ~ 15852220 (-) |
| G116014 | slc25a5,LOC104931197,LOC101464643,LOC102200398,LOC106515500,LOC103395576,LOC108430428 | other | upstream | 1282717 | 16068735 ~ 16071362 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| bowfin (Amia calva) | G104909 | NA | unknown | CM030133.1 | CM030133.1 | 13365083 ~ 13367074 (-) |
| mexican tetra (Astyanax mexicanus) | G205985 | NA | non-coding | NC_035920.1 | CM008323.1 | 17257551 ~ 17259771 (+) |
| mexican tetra (Astyanax mexicanus) | G97365 | NA | non-coding | NC_035907.1 | CM008310.1 | 4988940 ~ 4989339 (-) |
