G115331


Basic Information

Item Value
gene id G115331
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 14803454 ~ 14804191 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU136099
CATGAATCTGCACAAAttagcccataatattgaagtggatTGGAAATtcaagtttgcaaaattatttacaaaaaaataaaatttaaaagaaaaaaatgtgatatgatattttttgccaGATTGCCCAACCCTAGATAGACATTCTTGATCTTGCTTCTCTGATCAAACACCTTCCTTACCCAGTCAGTGACTTTTGGTGGACAGCCGTCTCTAGGCAGAGTCATGGtatgccatatttttttccccatgttttAATAATGAGTTTAATATTGCTCTGCGGGATGTCCAACAttcttttccagaactttgtgcCAGAATTGTTTTAATAGCTCCTTGTTCTTCatcatgctgtttgtttaggtatgttcccTAACAAACTCTGCTACTTTACAGGAAGAACTATATATCGAGATCATGTAAAACTTCATGCAAGTGGACTCTAACTGATCCTGTGACTTGTGGtgaaatacttatgcaatcattTGCAAAGACACaacttctacattttttttaaaaattatatattcattAGGGGTTACACAACTACAGATGTTACTTGTCTGGCAGTAACTTATGAAAATAGTCAGTTAGTTCTcttttcaatatttaaaatgcGAACTGTTTCAGGACTAGTGCTGGGCAATCGggcaaaaaatatatcacaattttttttttttAATATTATGGGCTAATT

Function

NR:

description
PREDICTED: tripartite motif-containing protein 16-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU136099 True 694 lncRNA 0.34 2 14803454 14804191

Neighbor

gene id symbol gene type direction distance location
clint1a clint1,LOC108427862 coding downstream 182048 14600113 ~ 14621406 (-)
zbtb3 zbtb3 coding downstream 208795 14591624 ~ 14594659 (-)
trmt12 trmt12 coding downstream 218027 14576136 ~ 14585427 (-)
sytl4 sytl4 coding downstream 227831 14560234 ~ 14575623 (-)
tspan7 tspan6 coding downstream 267497 14529981 ~ 14535957 (-)
il12ba NA coding upstream 36989 14841180 ~ 14854258 (-)
sh3tc2 sh3tc2 coding upstream 113805 14917996 ~ 14932160 (-)
pttg1 LOC108268450 coding upstream 235412 15039603 ~ 15042499 (-)
foxi3b LOC108269392,LOC108427851 coding upstream 247169 15051360 ~ 15053378 (-)
LOC113528773 wnt8-2,LOC108268465,LOC108427847,LOC103036102,LOC106604410,LOC107752032,LOC107664333,LOC107669112 coding upstream 265632 15069823 ~ 15071886 (-)
G115329 NA non-coding downstream 17436 14785329 ~ 14786018 (-)
G115325 NA non-coding downstream 55461 14745939 ~ 14747993 (-)
G115143 NA non-coding downstream 263146 14540108 ~ 14540308 (-)
G115100 NA non-coding downstream 328989 14468250 ~ 14474465 (-)
G114761 NA non-coding downstream 768559 14034642 ~ 14034895 (-)
LOC113528719 NA non-coding upstream 203520 15007711 ~ 15016373 (-)
G115477 NA non-coding upstream 329006 15133197 ~ 15133435 (-)
G115553 NA non-coding upstream 514549 15318740 ~ 15318949 (-)
G115554 NA non-coding upstream 516829 15321020 ~ 15321301 (-)
G115620 zdhhc24,LOC107744556,LOC107752023 non-coding upstream 596376 15400567 ~ 15402679 (-)
ebf1a ebf1,ebf1a,LOC105011268 other downstream 27961 14670189 ~ 14775493 (-)
G114873 NA other downstream 581599 14220316 ~ 14221855 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683,LOC107593230 other downstream 887866 13841619 ~ 13915588 (-)
G114460 NA other downstream 1252679 13547512 ~ 13550775 (-)
fbxo38 fbxo38 other downstream 1775499 12934557 ~ 13027955 (-)
tmsb2 NA other upstream 276593 15080784 ~ 15082504 (-)
apln apln other upstream 712863 15517054 ~ 15540726 (-)
ndufa1 NA other upstream 923459 15727650 ~ 15729388 (-)
G115842 dlg3,LOC107751999 other upstream 1046830 15851021 ~ 15852220 (-)
G116014 slc25a5,LOC104931197,LOC101464643,LOC102200398,LOC106515500,LOC103395576,LOC108430428 other upstream 1264544 16068735 ~ 16071362 (-)

Expression


Co-expression Network