tmsb2


Basic Information

Item Value
gene id tmsb2
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 15080784 ~ 15082504 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU136210
CACGCCCTGGTGGAGATGCAGAAGCATAGACGCCAgcaaacacttcacacacactctcactctctccttccctGCTTGTGGAAACAGCCATTTGTACCATACGCTAGCATGTCTGACAAGCCAGATCTCACAGAGATTGCCAGGTTTGACAAAACCAAACTGAAGAagacagagacaaaagagaAGAACCCTCTGCCCACCAAAGAGACTATTgaacaggaaagaaaaggagataCAAGCCCCTAACCTGATGGAGAAGAGGAAGGCCAAGCACAACAGATGCTCCTTCGATGGCAcgttattaaatattaactattTATGTTTCCTTTTTAAGTTTAGTGGGTACTACTGCCCCTTGTGATGCATGGTTACCATGGTGATTGGTCACCTTCTGGAAAACAAGACATGGAGTGACATAAGATAGTGTTTGAACATGGATCTTTTAACAAATTCCATTCATAgcaattttctaaataaaaatcttcatgaaataaagacaaatatgaaca
>XM_026917575.2
tttctctctctccctctctctctctctgataaaTCCACGCCCTGGTGGAGATGCAGAAGCATAGACGCCAgcaaacacttcacacacactctcactctctccttccctGCTTGTGGAAACAGCCATTTGTACCATACGCTAGCATGTCTGACAAGCCAGATCTCACAGAGATTGCCAGGTTTGACAAAACCAAACTGAAGAagacagagacaaaagagaAGAACCCTCTGCCCACCAAAGAGACTATTgaacaggaaagaaaaggagataCAAGCCCCTAACCTGATGGAGAAGAGGAAGGCCAAGCACAACAGATGCTCCTTCGATGGCAcgttattaaatattaactattTATGTTTCCTTTTTAAGTTTAGTGGGTACTACTGCCCCTTGTGATGCATGGTTACCATGGTGATTGGTCACCTTCTGGAAAACAAGACATGGAGTGACATAAGATAGTGTTTGAACATGGATCTTTTAACAAATTCCATTCATAgcaattttctaaataaaaatcttcatgaaataaagacaaatatgaacacacacaca

Function

NR:

description
thymosin beta-like

GO:

id name namespace
GO:0045202 synapse cellular_component
GO:0005102 signaling receptor binding molecular_function
GO:0005179 hormone activity molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04723 Retrograde endocannabinoid signaling
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU136210 False 509 lncRNA 0.41 3 15080792 15082469
XM_026917575.2 True 552 mRNA 0.42 3 15080784 15082504

Neighbor

gene id symbol gene type direction distance location
LOC113528772 LOC108268464,LOC108427846,LOC107669111,LOC107602558,LOC107743918,LOC107752029 coding downstream 4185 15071998 ~ 15076599 (-)
LOC113528773 wnt8-2,LOC108268465,LOC108427847,LOC103036102,LOC106604410,LOC107752032,LOC107664333,LOC107669112 coding downstream 8898 15069823 ~ 15071886 (-)
foxi3b LOC108269392,LOC108427851 coding downstream 27406 15051360 ~ 15053378 (-)
pttg1 LOC108268450 coding downstream 38285 15039603 ~ 15042499 (-)
sh3tc2 sh3tc2 coding downstream 148624 14917996 ~ 14932160 (-)
lonrf1 LOC108269139,LOC108427843 coding upstream 215849 15298353 ~ 15314460 (-)
med7 med7,LOC107744582,LOC107752091,LOC107669063,LOC107664325 coding upstream 233111 15315615 ~ 15318653 (-)
LOC113529119 NA coding upstream 303972 15386476 ~ 15399608 (-)
clic2 clic2,LOC102778350,LOC101481614 coding upstream 345042 15427546 ~ 15432561 (-)
zdhhc9 zdhhc9,LOC107744547,LOC107752016,LOC105893011 coding upstream 536586 15619090 ~ 15647053 (-)
LOC113528719 NA non-coding downstream 64411 15007711 ~ 15016373 (-)
G115331 NA non-coding downstream 276593 14803454 ~ 14804191 (-)
G115329 NA non-coding downstream 294766 14785329 ~ 14786018 (-)
G115325 NA non-coding downstream 332791 14745939 ~ 14747993 (-)
G115143 NA non-coding downstream 540476 14540108 ~ 14540308 (-)
G115477 NA non-coding upstream 50693 15133197 ~ 15133435 (-)
G115553 NA non-coding upstream 236236 15318740 ~ 15318949 (-)
G115554 NA non-coding upstream 238516 15321020 ~ 15321301 (-)
G115620 zdhhc24,LOC107744556,LOC107752023 non-coding upstream 318063 15400567 ~ 15402679 (-)
G115675 NA non-coding upstream 419331 15501835 ~ 15538043 (-)
ebf1a ebf1,ebf1a,LOC105011268 other downstream 305291 14670189 ~ 14775493 (-)
G114873 NA other downstream 858929 14220316 ~ 14221855 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683,LOC107593230 other downstream 1165196 13841619 ~ 13915588 (-)
G114460 NA other downstream 1530009 13547512 ~ 13550775 (-)
fbxo38 fbxo38 other downstream 2052829 12934557 ~ 13027955 (-)
apln apln other upstream 434550 15517054 ~ 15540726 (-)
ndufa1 NA other upstream 645146 15727650 ~ 15729388 (-)
G115842 dlg3,LOC107751999 other upstream 768517 15851021 ~ 15852220 (-)
G116014 slc25a5,LOC104931197,LOC101464643,LOC102200398,LOC106515500,LOC103395576,LOC108430428 other upstream 986231 16068735 ~ 16071362 (-)
arr3b LOC108268864 other upstream 1024275 16106779 ~ 16115433 (-)

Expression


Co-expression Network