G115553


Basic Information

Item Value
gene id G115553
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 15318740 ~ 15318949 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU136359
gttaaattcTGTTGCacccttgtgacagcttcctgattcagccatgagaatgatttcaacgCGCTCTTCTTTTGTCTAAGGCATTCTTAAAGTCTATCTGAAAAATATGTAGACTATAACCTAAGTATGAACAATTctggaagacattttgttaaaaaagtgttcatttcccctgtgtatggagacttttcgGACGCCCTGGTAGCTGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU136359 True 210 lncRNA 0.39 1 15318740 15318949

Neighbor

gene id symbol gene type direction distance location
med7 med7,LOC107744582,LOC107752091,LOC107669063,LOC107664325 coding downstream 87 15315615 ~ 15318653 (-)
lonrf1 LOC108269139,LOC108427843 coding downstream 4280 15298353 ~ 15314460 (-)
LOC113528772 LOC108268464,LOC108427846,LOC107669111,LOC107602558,LOC107743918,LOC107752029 coding downstream 242141 15071998 ~ 15076599 (-)
LOC113528773 wnt8-2,LOC108268465,LOC108427847,LOC103036102,LOC106604410,LOC107752032,LOC107664333,LOC107669112 coding downstream 246854 15069823 ~ 15071886 (-)
foxi3b LOC108269392,LOC108427851 coding downstream 265362 15051360 ~ 15053378 (-)
LOC113529119 NA coding upstream 67527 15386476 ~ 15399608 (-)
clic2 clic2,LOC102778350,LOC101481614 coding upstream 108597 15427546 ~ 15432561 (-)
zdhhc9 zdhhc9,LOC107744547,LOC107752016,LOC105893011 coding upstream 300141 15619090 ~ 15647053 (-)
mcts1 mcts1 coding upstream 336756 15655705 ~ 15660236 (-)
cul4b cul4b coding upstream 343914 15662863 ~ 15673473 (-)
G115477 NA non-coding downstream 185305 15133197 ~ 15133435 (-)
LOC113528719 NA non-coding downstream 302367 15007711 ~ 15016373 (-)
G115331 NA non-coding downstream 514549 14803454 ~ 14804191 (-)
G115329 NA non-coding downstream 532722 14785329 ~ 14786018 (-)
G115325 NA non-coding downstream 570747 14745939 ~ 14747993 (-)
G115554 NA non-coding upstream 2071 15321020 ~ 15321301 (-)
G115620 zdhhc24,LOC107744556,LOC107752023 non-coding upstream 81618 15400567 ~ 15402679 (-)
G115675 NA non-coding upstream 182886 15501835 ~ 15538043 (-)
G115740 NA non-coding upstream 328602 15647551 ~ 15647751 (-)
G115746 NA non-coding upstream 343137 15662086 ~ 15662491 (-)
tmsb2 NA other downstream 236236 15080784 ~ 15082504 (-)
ebf1a ebf1,ebf1a,LOC105011268 other downstream 543247 14670189 ~ 14775493 (-)
G114873 NA other downstream 1096885 14220316 ~ 14221855 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683,LOC107593230 other downstream 1403152 13841619 ~ 13915588 (-)
G114460 NA other downstream 1767965 13547512 ~ 13550775 (-)
apln apln other upstream 198105 15517054 ~ 15540726 (-)
ndufa1 NA other upstream 408701 15727650 ~ 15729388 (-)
G115842 dlg3,LOC107751999 other upstream 532072 15851021 ~ 15852220 (-)
G116014 slc25a5,LOC104931197,LOC101464643,LOC102200398,LOC106515500,LOC103395576,LOC108430428 other upstream 749786 16068735 ~ 16071362 (-)
arr3b LOC108268864 other upstream 787830 16106779 ~ 16115433 (-)

Expression


Co-expression Network