foxi3b (LOC108269392,LOC108427851)


Basic Information

Item Value
gene id foxi3b
gene name LOC108269392,LOC108427851
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 15051360 ~ 15053378 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917548.2
GGTGACAGAACTGACGAGAGTGCAAGGGCAAACAATGGCAGAGTGAAGAACGATATTAGACCTCTCAGCTGCAGATCTGTTtttaaaagaagagaaaaagaaatatttctggACCATAGAAGAAACAGTGTATTACATCTGGAGCCACCTGAGCCATTTGTATCCAGATAGGAGCGTCTTATGAAGCAATAATCATGACATCATATGAACAAGGTCAGTCTCCAACTCGATGTGGTCCACAGTTCCCCAGCTTGGGACAGGAGCCTCCAGAGCTGAGCCTTTACAGCGATAATTACTATCCTCCTCCATCACTGCCAAGTCCACAGAGGACAAACCCCTCCTCATATGATCTTGGGGAATATGCAACTTCATCTCCTAACCCATACCTGTGGTTCAGTGGAACTGGGATCAACACTTCTGCATATCTGGGTGGTGCACCAGGTCCTGCTGTACCCTCCTTTGTGCCGCAGCATTATGGCATGCAGAGGCCTTACCTTGGGCAGGGAGGTCCCGGGGGTGCTAGTGGAGAACTGGGTTGGTTCTCCATACCTTCTCAGGAGGACCTAATGAAGCTGGTCAGGCCACCCTACTCATATTCAGCACTCATTGCAATGGCAATACATGGTGCCCCAGACCGGCGCCTGACTCTGAGTCAGATTTACCAGTATGTAGCAGACAATTTTCCTTTCTACAATAAGAGCAAAGCTGGCTGGCAGAACTCTATTCGCCACAACCTATCACTGAATGACTGTTTCAAGAAAGTACCCCGGGATGAAGATGACCCTGGTAAAGGTAATTACTGGACCCTTGACCCAAACTGTGAAAAGATGTTTGACAACGGCAACTTCAGGCgcaagaggaagagaaagtcTGATGGTCTTGCTGGGGAGGGCAGCTCTGGAGGAGCTCTTAGCTCAGAGGCAGGAGATGGGAGTGGGAGCCCCAAAAATGCAACGCTTGACATTTCAGCCTCACCTGAGAAAGCTCCTGCCATGGGTCCCCCCCCTTGCCTGAGCAACTTCCTGACAGAAATGTCTGGGGTGTCAGCTGGGTCTGTGGAGGTGGGTGGAGAACCCATTAATCGCCCCATTCCTCTCAGCCTACCAGTGGATGGCACACAAAGAGCAACCCAAACATCAGGCTTTAGCTCCTACTCTCCTGGTTCCACAGTCCCTGAATGGGCATCTCCTCTCCCACCACCGCCTCCCATCTCCCCCTCAGGGTCTCATGCCACTTTAGGCTACAGCAGTCCTGCTCTCAACCAGTTCAGTGGCCATTTCTACCCTGGCTTGAACTCAACTGGCATTCTGTATCCCCGAGAGGGCACAGAGGTGTGATAGAACTGGACAAAAGTCAAAAGTCAATAAGAAATAGCACAAGCTTCATATTGAGCTGCAGCCAGAGActggtgagagaaaaaaaaaagcttcacatatacacacacttactacCAGTTGACTGGTTTTGGTTGAATGCCGAAATGGCCCCGTGAGTGTGAGATTACAGCAGATTCCCACAGGAACAGCTTAGTCAGCATCATGATGTGCGTGATACTAACAAAAGCCACCAGCAGCTTCGATGTGAGGTCTACTGCTGACATTATGCCATTCCATCCAACTATCTTTGCTGATCGTATCACTAAAACTGTGAGCACTTGTACTAACACTGAACATGGCTTAAAAAAGTCTTTAACCAGCAGAGTAACCTTAGAGAAAGTGCATGGGGTGCAACATTCTTCATTCTACACCTGTAATTTGATCCATTCAGTTTTTTATACTTTGTCTTGTTTGTCTGCTTAATGGAAAGTTGTGATGTCTTTTTACTTCTAAAGGTGTGAGTAAATGTTGTACAGAGTTTTA

Function

NR:

description
forkhead box protein I1-ema-like

GO:

id name namespace
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0009957 epidermal cell fate specification biological_process
GO:0007389 pattern specification process biological_process
GO:0051090 regulation of DNA-binding transcription factor activity biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0008301 DNA binding, bending molecular_function

KEGG:

id description
K09401 FOXI; forkhead box protein I

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917548.2 True 1859 mRNA 0.48 2 15051360 15053378

Neighbor

gene id symbol gene type direction distance location
pttg1 LOC108268450 coding downstream 8861 15039603 ~ 15042499 (-)
sh3tc2 sh3tc2 coding downstream 119200 14917996 ~ 14932160 (-)
il12ba NA coding downstream 197102 14841180 ~ 14854258 (-)
rnf145a rnf145,rnf145a,LOC107723822,LOC107669103,LOC107664350,LOC107740095 coding downstream 228187 14786083 ~ 14823173 (-)
clint1a clint1,LOC108427862 coding downstream 429954 14600113 ~ 14621406 (-)
LOC113528773 wnt8-2,LOC108268465,LOC108427847,LOC103036102,LOC106604410,LOC107752032,LOC107664333,LOC107669112 coding upstream 16445 15069823 ~ 15071886 (-)
LOC113528772 LOC108268464,LOC108427846,LOC107669111,LOC107602558,LOC107743918,LOC107752029 coding upstream 18620 15071998 ~ 15076599 (-)
lonrf1 LOC108269139,LOC108427843 coding upstream 244975 15298353 ~ 15314460 (-)
med7 med7,LOC107744582,LOC107752091,LOC107669063,LOC107664325 coding upstream 262237 15315615 ~ 15318653 (-)
LOC113529119 NA coding upstream 333098 15386476 ~ 15399608 (-)
LOC113528719 NA non-coding downstream 34987 15007711 ~ 15016373 (-)
G115331 NA non-coding downstream 247169 14803454 ~ 14804191 (-)
G115329 NA non-coding downstream 265342 14785329 ~ 14786018 (-)
G115325 NA non-coding downstream 303367 14745939 ~ 14747993 (-)
G115143 NA non-coding downstream 511052 14540108 ~ 14540308 (-)
G115477 NA non-coding upstream 79819 15133197 ~ 15133435 (-)
G115553 NA non-coding upstream 265362 15318740 ~ 15318949 (-)
G115554 NA non-coding upstream 267642 15321020 ~ 15321301 (-)
G115620 zdhhc24,LOC107744556,LOC107752023 non-coding upstream 347189 15400567 ~ 15402679 (-)
G115675 NA non-coding upstream 448457 15501835 ~ 15538043 (-)
ebf1a ebf1,ebf1a,LOC105011268 other downstream 275867 14670189 ~ 14775493 (-)
G114873 NA other downstream 829505 14220316 ~ 14221855 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683,LOC107593230 other downstream 1135772 13841619 ~ 13915588 (-)
G114460 NA other downstream 1500585 13547512 ~ 13550775 (-)
fbxo38 fbxo38 other downstream 2023405 12934557 ~ 13027955 (-)
tmsb2 NA other upstream 27406 15080784 ~ 15082504 (-)
apln apln other upstream 463676 15517054 ~ 15540726 (-)
ndufa1 NA other upstream 674272 15727650 ~ 15729388 (-)
G115842 dlg3,LOC107751999 other upstream 797643 15851021 ~ 15852220 (-)
G116014 slc25a5,LOC104931197,LOC101464643,LOC102200398,LOC106515500,LOC103395576,LOC108430428 other upstream 1015357 16068735 ~ 16071362 (-)

Expression


Co-expression Network