sytl4 (sytl4)


Basic Information

Item Value
gene id sytl4
gene name sytl4
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 14560234 ~ 14575623 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917818.2
gtgagagagagagagagagagagagagagagactgttagGAAGTTTTCCCATCTTCCGGCATTGCACAGGCTTGTGGTTTTTCCGCACAGCTGGGAGTGCAGTACAGTAGAGCAGAGTGGGGTAGAGTggagtgaagtgaagtggagtTGGTGAGGAAGCGGCAGCAGAAAAGCTCAGCACACGTCGTTCTGGATGTTGGGTAGTTAACAGGAAGCTTAGACAGGTTGAGATGGTGCAAGCCATGGATACCATCAACGTGTCCTTCTTGACTGATTCAGAGAGGGAGCTGATCTTATCAGTGCTGCATCGAGATGAAGAGCTGAGACAGTTAGAGGAACAGCGTGTGAAGAGACTGAAAGCAGAGTTGTTGGACATCAGGAGGAAGGGAGCAAAGCGCAGCAATGGCAACTACAGTGAGCACAGCTGTGGACGCTGTCAGGAGCCCCTGGGTCGTCTAGCTGCCAACTCCAACCAGTGCCCAGTGTGCAAACACCAAGTGTGCCGAAACTGTCGCACTGTCCAAGCCAAAGGGTTCTggctgtgcagtgtgtgtgctaaaGAGGCGGACCTAAAGAAGTGTACAGGCGACTGGTTCTATGATCAGAGGGTTAACCGTTTTTCCACAGCTCCTGGACATGACATAGTGCGAGCCTCACTCAGGAAGCGGCCTCAGACAAAGAAGCGTGAAACTACCGGGGAGGTGCTGTTGAACAGTCCAGAGTTGAACTCCAGCCAGACTTTACCAGTACCACGGCCCAGACTGAAGGATCTtgctctgggaaaaaaaagCCCATCCAGTGAGCATCTGCAGCAGAGCGACACAAACTTGGCAGACAATGCCAGCCTCAGCAGTAGCCGTGCTGACACCGACTCTTTCTCCGGTACTCCATCGACACAGAGGAAAGAGGTCGTGAACAGTTTGAGTGGAAGAGTTTCCACTGCATCAAGTGTGTCCCCTCCTCCTAAAACCCACAGTCCTTCTGGATCCTCTACAGGCACAGAGACTTCATCTTTAGTTCATCAAATTAATATATGCCCAGAGTCCCTGAATGATGTGGATGGCCTTTTCAAGAAGAGTGTTAGAAGAGTGCACAAAATATCAGATTTTAAGCCAGCCTCTGTAATGGACGTTCGCTTTGAAGGGACTGAGAACACCGCAGCCTCCATGGGAGACAGAAGCAAGTCAGTTCCAGGTCTAAACATAgatgaagaggaggaggaagaggatatTGATAATTTGGTCAGCATTCACAGAAGGACTGTGGGGGACAGCACCACCAATCTGCGTGGCTCCAGTAGCACTCTGGGCAGCATGATGAGTGTGTACAGTGAGGCAGGGGATTACGACATTGTGGACGTCAGTGGGGACATTGTCTTCTCCCTCCACTATGatgagaacatgcaaaaactCTCTGTTCTCATCAAAGAGTGCAGAGGGCTGGCTTACGCTGACACTGCCAAGAAGAAGTGCAACCCATATGTCAAAAGTTACCTCCTCCCAGACAAATCTCGTCAGAGCAAGAAGAAAACGGCTATCAAGCGTAACACCATCAACCCCAGCTACAATGAGACATTAAAGTACTCTATCAGTCGCTCCCAGCTGATGTCTCGTACCCTCCAGCTCTCAGTGTGGCATTATGACCGTTTTGGGCACAATGCTTTCCTCGGGGAGGTGGAGATACCACTGGACTGCCATGATATTGACTCAAACCAAGAGGAGTGTGTGACGCTCAGAGGAAAGACGGGCAACTCTTCGACACTGTCACCTTTTTCCCAGTACAAAGGAGAACTGGTGATTTCTCTAAAGTATGTCACAGAGGCAAAGGCAGCTGGAGAAAAGCCCAGAGGCAAAAAGGCCAAAGTTGATGCTGGTGGAGAGCTGCACGTTTTAATAAAGGAGGCTAAGAATCTTTGTGCGATGAAAGCAGGGGGCACGTCCGATTCCTTCGTGAAAGGATACCTGCTGCCGTCTACAAGCAAGTCGACAAAGAAGAAGACGCAGGTGGTGAAGAAGACGGTGAACCCACACTACGACCACACATTTGTATACAAAGATGTGTGTCTGGAGCAGCTAAAGGGCATGTGTCTAGAGCTCACAGTCTGGGACCGAGAAGCCATGTCCAGCAACGATTTTCTGGGAGGAGTGCGTTTGAGCTCAGGGGCAGTGCGACTGAAGGAGGGGAAGCGGGAGTGGGTTGCTGACTCAACAGGAGAGGAAGTGTCTTTGTGGCAGAAGATGATGCAGTTCCCAGATTCCTGGGCAGAGGGCAGTCTCCCCCTGCGTTCGTCCATGGGCAAGTGAAAGTAAAGACGCTGGCAATGTGCCAAGATTAGCAAGAAACACATGGGTTGGTATTGCAAATCCTTTGGTGAAAACATTCCAGTTTTCAAtattataaacagtataaacacTTCAGACCAGGTGACCACCTATTTTTATCTCTTCAGTACAGGCCAGTTTAAGCagagaactgaactgaattttgTGCTTATGGGTGCAATTCagtgcatttattttctatttcctttttatgtatatacaggTAAAATCGCAATATTGCTAAACGTTTATAAAAATGCTGGAGCAAAAATGATGCACAAAACGTAATCTTTATTGGCATTCCTCCTGAATGAGTACAGTTGCCTAATTCTAAAAATGTGTATACAAAGCTGTAATTATTTACTGCCTAATGACaaagctgagttactgtaggTCCTGACTACGATACACGTCTTATAAAAACAGCTATATACAATTcacttaataaatattatataattttttgcacTATTCCTGTTAGCTGTGCTATGTACAAAATACTGAGGATTCTGAAATACATTTCTTATGTCTAAAAACACAACCCATAAAAAGGACAGTATTTCAATACACAGTTACAATATAGACATCTGTAATGTGTGCGAAAGCAACACTATCTAAACATAGAAAGTAGAATCCTCGCAAAGCACAGCTTTGCTGTTCATGGCCCACTTGGTGTTGATGTGGAGTGAATCTTTTCTGGCTCAGTCACAAAGGTCTTTGTTTAGCTGCAGCCTCTCTCGCTCCTCCTCTGTGAGAAGATACTCGTCGATGTAAGTGTAGAGTTCATCTGAGGTGGTGGGGTTAATGAAACGTTCCCGGTCCACACCAAGTTCATCAAGCAACACCATGTTGAAGTATGAGCGAGTGATCTGTAGCGCCTGCCTGTAATTAATccatacacaaacataataGAGCTGCAGTTTAATGACATTAATTGGAAAAAAGTttacaatttgtttgtttatcattaATAGTAAAGTTAGAGTGTGTTTAAGGAGATAGCCAGTGATACTACAAATGTTTTGCAGCTAACCTGAGACCCTCAATGACTTCAGTGTCTAGAAATTGTTCTTTAATCCGGCCCACTTCTCGAGGTGGAATGCCTATCAATTCAATCACTGTCACACGTCGAAGATCCAGACCACATCCAGCTCTCTAAGAGATTAAACATTGACATGGTTTCCAAtagaaatgtatttgtatttgagaTTTCCAAAGATATAAAGCTATTGGACCCTTAGAAGTAACAGACCTGTAGCATGATGTTCTGAAGCTTGTAGTACTGGTCAGTTGCACTTGGAGTGGACACAATGAGGACTCTCCTCTTCTCATAGAACTGGTCAAGCAGGGCACCAGCGGACCTGATGTCAGTTTTGATCTGCATCACTAATAAAGGCACCACTTTCAATAGGTGATTTCTTTACATTCAGTCATTTGCtcttatacaaaattaatcaaatgaGGAAACTCATTtccttttgaaaaaaaaaaactatttcataGAATATATCCTGTTATTGAAGGTTATTGTataggttttattttaatgatgcctctacattaaaaaaaaaagaacaaagtaGCAGAGGAGTATGAGTTTCCCCCAGGGATTGGCAAAAATACAtatgcttaataaaaaaaatggcaaaaaaatgtaaatgtttaaaaattacataCTGCGActgtaaaatgtattcaaataaattagtttttttttttaataaatacattttgtataaCTAGAACCTTGCTAGCAGAGAATTTCTAGCTGTATACCAGATGTCTGCTGTACAATCCATCAAAATTACCTGTAAGTTAAAATCATTTCCTTGTACAAagtattttatgcattttgaaaatatgcacttttattttcctgtgaccaccaaatacaaattacaaaatca

Function

symbol description
sytl4 Predicted to enable neurexin family protein binding activity. Predicted to be involved in exocytosis. Predicted to act upstream of or within intracellular protein transport. Predicted to be active in exocytic vesicle and plasma membrane. Orthologous to human SYTL4 (synaptotagmin like 4).

NR:

description
synaptotagmin-like protein 4 isoform X3

GO: NA

KEGG:

id description
K17598 SYTL; synaptotagmin-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917818.2 True 4228 mRNA 0.44 18 14560234 14575623

Neighbor

gene id symbol gene type direction distance location
tspan7 tspan6 coding downstream 24277 14529981 ~ 14535957 (-)
mid1ip1l LOC108269374,LOC108427811,LOC107680990 coding downstream 31696 14526759 ~ 14528538 (-)
trnav-uac NA coding downstream 91609 14468553 ~ 14468625 (-)
cstf2 cstf2,LOC107688691,LOC107680996,LOC107740160 coding downstream 95635 14454809 ~ 14464599 (-)
arl13a arl13a coding downstream 136581 14416534 ~ 14423653 (-)
trmt12 trmt12 coding upstream 513 14576136 ~ 14585427 (-)
zbtb3 zbtb3 coding upstream 16001 14591624 ~ 14594659 (-)
clint1a clint1,LOC108427862 coding upstream 24490 14600113 ~ 14621406 (-)
rnf145a rnf145,rnf145a,LOC107723822,LOC107669103,LOC107664350,LOC107740095 coding upstream 210460 14786083 ~ 14823173 (-)
il12ba NA coding upstream 265557 14841180 ~ 14854258 (-)
G115143 NA non-coding downstream 19926 14540108 ~ 14540308 (-)
G115100 NA non-coding downstream 85769 14468250 ~ 14474465 (-)
G114761 NA non-coding downstream 525339 14034642 ~ 14034895 (-)
G114739 NA non-coding downstream 571424 13988570 ~ 13988810 (-)
G114729 NA non-coding downstream 584308 13975725 ~ 13975926 (-)
G115325 NA non-coding upstream 170316 14745939 ~ 14747993 (-)
G115329 NA non-coding upstream 209706 14785329 ~ 14786018 (-)
G115331 NA non-coding upstream 227831 14803454 ~ 14804191 (-)
LOC113528719 NA non-coding upstream 432088 15007711 ~ 15016373 (-)
G115477 NA non-coding upstream 557574 15133197 ~ 15133435 (-)
G114873 NA other downstream 338379 14220316 ~ 14221855 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683,LOC107593230 other downstream 644646 13841619 ~ 13915588 (-)
G114460 NA other downstream 1009459 13547512 ~ 13550775 (-)
fbxo38 fbxo38 other downstream 1532279 12934557 ~ 13027955 (-)
G114215 NA other downstream 1864725 12694771 ~ 12695509 (-)
ebf1a ebf1,ebf1a,LOC105011268 other upstream 94566 14670189 ~ 14775493 (-)
tmsb2 NA other upstream 505161 15080784 ~ 15082504 (-)
apln apln other upstream 941431 15517054 ~ 15540726 (-)
ndufa1 NA other upstream 1152027 15727650 ~ 15729388 (-)
G115842 dlg3,LOC107751999 other upstream 1275398 15851021 ~ 15852220 (-)

Expression


Co-expression Network