hspa9 (hspa9,LOC106604950)


Basic Information

Item Value
gene id hspa9
gene name hspa9,LOC106604950
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 12861650 ~ 12904853 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917900.2
CAAGCCATGTGGTGTAAAAGATAGTTCCAGAAGCATACCGTCGGCAAGGTGGACGTCATCTACTCGTAGTGACCGTGAGGATTACTAGAACTCATTTAGGAGAAATTATTTGTAACTGCTTGCTTGGTTCAGTAATAGTATACCACACCCGTGTTTATAAATTAAGGAAAATGTTAAACGTAGCAAAAACAGTTTCACGAAACCTTTCTCCAAGCTGCGTCCGAGGTGTACCCTCTTTTGTGAAAAAGGCTTGCTGGAATAGGTTGACGGAATATGCCATTCAGACTGCATCCAGACGTGAATATGCTTCAGAAGCAATCAAAGGAGCAGTGATTGGAATTGACCTGGGGACCACAAATTCTTGTGTGGCTGTCATGGATGGTAAACAAGCAAAGGTGCTTGAAAATGCAGAAGGTGCAAGGACAACTCCATCAGTTGTAGCCTTCACAGCTGAAGGGGAGAGACTGGTGGGTATGCCAGCCAAAAGGCAAGCTGTGACTAATCCAAACAACACACTCTACGCAACCAAGCGCCTGATTGGGAGACGCTTTGATGACCGAGAAGTACAGAAAGATTTAAAGAATGTTCCATATAAGATAGTACGTGCATCCAATGGAGATGCCTGGATAGAGGCCCATGGAAAGCTGTACTCCCCTAGCCAGGCTGGGGCCTTTATTCTGATGAAGATGAAAGAGACTGCAGAGAATTATTTGGGCCATACAGTGAAGAATGCTGTTGTGACTGTACCAGCCTATTTTAATGATTCTCAGAGACAGGCAACCAAAGATGCTGGCCAGATTGCAGGTCTAAATGTGCTCAGAGTAATCAATGAACCTACAGCAGCTGCTCTGGCATATGGACTTGATAAGACTCAGGACaaggtTATTGCAGTGTATGATCTCGGAGGAGGCACATTCGATATCTCAGTCTTGGAGATCCAGAAAGGAGTTTTTGAAGTGAAATCTACCAATGGTGACACATTCTTAGGTGGTGAAGATTTCGATCAGTATCTGCTAAATCATATAGTGAAAGAGTTCAAGAGAGAGTCAGGTGTGGATCTAACCAAAGACAACATGGCATTGCAGAGATTGAGAGAGGCAGCTGAGAAGGCCAAATGTGaactttcttcttctctgcagACTGACATCAACCTGCCTTACCTAACGATGGACAGCTCTGGTCCCAAACACTTGAACATGAAGCTTACCCGTGCCCAGTTTGAGGGAATTGTGGGAGATCTAATTAAAAGGACTGTGGCCCCATGTCAGAAGGCCATGCAAGATGCTGATGTTTCTAAGAGTGACATTGGAGAAGTCCTGCTGGTTGGAGGAATGACTCGTATGCCAAAGGTTCAGCAAACAGTACAGGATCTGTTTGGCAGGGCCCCTAGTAAATCTGTTAACCCAGATGAAGCTGTGGCTATTGGGGCAGCCATCCAAGGGGGTGTATTGGCTGGAGACGTGACAGATGTGCTCCTGCTGGATGTCACTCCCCTCTCTTTGGGAATTGAGACTCTGGGAGGAGTGTTCACCAAACTTATAAACCGCAATACAACCATTCCCACCAAAAAAAGCCAGGTGTTTTCTACTGCTGCTGATGGGCAAACACAAGTAGAAATTAAAGTTTGCCAAGGTGAGCGTGAAATGGCAGTGGATAATAAGCTCCTTGGACAGTTCACACTGGTTGGCATCCCTCCTGCTCCACGTGGTGTCCCACAGATTGAAGTTACCTTTGATATTGATGCCAATGGAATTGTACACGTTTCTGCTAAAGACAAAGGCACTGGACGTGAACAGCAAAttgtcaTCCAGTCCTCTGGTGGTCTCAGTAAAGATGACATTgagaacatgattaaaaatgctgaaaagtatgcagaggaggacagaaagaggAAGGATCGTGTTGAGGCTGTTAATATGGCTGAAGGCATTGTCCATGATACTGAGTCAAAGATGGAGGAATTTAAGGACCAGCTACCCACTGAGGAGTGCAAGAAGCTTCAGGATGAGATCACTAAAGTGAGAGATCTACTTTCACGAAAGGACCTTGAGACTGGTGAAAACATCAAACAGGCTGCCACAGGTCTACAGCAAGCATCTCTGAAGCTCTTTGAGATGGCTTATAAGAAGATGGCATCAGAGAGAGAAGGCAGCACAGGCAGTTCAAGCGGAATGGAGACAGGAGAGAAAAAGGAGGGACAACAGTAGGGCCACCAAAGTGAAGGTTATCCTGGGACTGAAATACTTGGAAATGTAAACAGTCTTGAACAAGACTGACATCTTAGTCTCCATTTATTCTTACATACTGCTTTATCACAGTATCATACATTTGTTATTGTATTACCATCCTTCTGAAATTAATTTCATATGTGTCCTTTTCAAGTTACAATGAtctaattattgttattgtaatttttcTGCAGTCTGTTACTGCTTTTGTGAcctttatattaaaatttgtaaatgaa

Function

symbol description
hspa9 Predicted to enable several functions, including ATP binding activity; ATP hydrolysis activity; and misfolded protein binding activity. Acts upstream of or within fin regeneration and hemopoiesis. Predicted to be active in mitochondrion. Is expressed in several structures, including digestive system; eye; midbrain; musculature system; and segmental plate. Human ortholog(s) of this gene implicated in Parkinson's disease and autosomal dominant sideroblastic anemia 4. Orthologous to human HSPA9 (heat shock protein family A (Hsp70) member 9).

NR:

description
PREDICTED: stress-70 protein, mitochondrial

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0006457 protein folding biological_process
GO:0031101 fin regeneration biological_process
GO:0005524 ATP binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K04043 dnaK, HSPA9; molecular chaperone DnaK

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917900.2 True 2467 mRNA 0.44 17 12861650 12904853

Neighbor

gene id symbol gene type direction distance location
spdl1 spdl1 coding downstream 198701 12581456 ~ 12662949 (-)
atoh8 atoh8,LOC107677004,LOC107753212,LOC107571829 coding downstream 312357 12527491 ~ 12549293 (-)
btk btk,LOC107554824 coding downstream 368851 12437839 ~ 12492799 (-)
LOC117597734 NA coding downstream 551487 12298166 ~ 12310163 (-)
hdac3 hdac3 coding downstream 798513 12025781 ~ 12063137 (-)
LOC113529411 hnrnpa0b,LOC108269291,LOC107593199,LOC107740138,LOC107680986,LOC107554845 coding upstream 157485 13062338 ~ 13063432 (-)
elf1 elf4 coding upstream 1263982 14168835 ~ 14208465 (-)
trnae-uuc_1 NA coding upstream 1304063 14208916 ~ 14208987 (-)
drp2 drp2,LOC107724836 coding upstream 1342219 14247072 ~ 14383606 (-)
cenpi cenpi coding upstream 1478886 14383739 ~ 14398448 (-)
LOC113542678 NA non-coding downstream 106175 12745982 ~ 12755475 (-)
G114228 NA non-coding downstream 116263 12745135 ~ 12745387 (-)
G114227 NA non-coding downstream 116615 12744816 ~ 12745035 (-)
G114226 NA non-coding downstream 116969 12744472 ~ 12744681 (-)
G114216 NA non-coding downstream 165569 12695853 ~ 12696081 (-)
G114284 NA non-coding upstream 6846 12911699 ~ 12911903 (-)
G114299 NA non-coding upstream 107764 13012617 ~ 13012844 (-)
G114302 NA non-coding upstream 109719 13014572 ~ 13015871 (-)
G114314 LOC107721237 non-coding upstream 125005 13029858 ~ 13030120 (-)
G114313 NA non-coding upstream 152852 13057705 ~ 13058683 (-)
G114215 NA other downstream 166141 12694771 ~ 12695509 (-)
G114097 NA other downstream 343456 12516358 ~ 12518194 (-)
timm8a timm8a,LOC107742474,LOC107680336,LOC107593201 other downstream 356840 12500940 ~ 12504810 (-)
G114013 NA other downstream 437593 12423728 ~ 12424057 (-)
G113959 csnk1a1,LOC106604944 other downstream 492707 12321331 ~ 12368943 (-)
fbxo38 fbxo38 other upstream 29704 12934557 ~ 13027955 (-)
G114460 NA other upstream 642659 13547512 ~ 13550775 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683,LOC107593230 other upstream 936766 13841619 ~ 13915588 (-)
G114873 NA other upstream 1315463 14220316 ~ 14221855 (-)
ebf1a ebf1,ebf1a,LOC105011268 other upstream 1765336 14670189 ~ 14775493 (-)

Expression


Co-expression Network