clint1a (clint1,LOC108427862)


Basic Information

Item Value
gene id clint1a
gene name clint1,LOC108427862
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 14600113 ~ 14621406 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917934.2
CTCGCGCAGCCTGAAACTAGTTTGGAGAGTTGAAGGTTTTGGTTTCGCGACAGCTGGACTTTCGCAACTACAGGATTAAAAGGGCTGGAAGACGTGTTACCGCGACGGAAAGCCTTAATCCACTGAGTCAAGATGCTGAATATGTGGAAAGTTAGAGAGCTGGTTGACAAAGCaacCAATGTTGTTATGAACTATTCAGAAACTGAATCTAAGGTTCGAGAGGCCACAAACGACGACCCATGGGGACCCTCTGGCCAGCTAATGGGAGAAATAGCCAAAGCTACATTCATGTATGAGCAGTTTCCAGAGGTAATGAACATGCTGTGGTACCGAATGCTGAAGGACAACAAGAAAAACTGGCGGAGAGTTTACAAGTCGTTACTGCTGCTGGGTTACCTGGTGCGAAACGGATCTGAGCGGGTGGTCACCAGCACACGAGAGCACCTGTATGACCTGCGCTCCATTGAGAGCTATCACTTTATAGATGAGAATGGGAAGGACCAAGGCATCAACGTGCGGCAGAAGGTAAAAGAGATGGTGGAGTTTGTGCAAGACGATGACAGGctgagagaagagaggaagaaggcCAAGAAAAACAGGGACAAATATATTGGCGTGTCCTCTGATAGCATGGGGGACTTCAGATACGCTGGCGACAGGTACGAGTCACGCTCCAAGTGGGATGATGACTGGGAGAGCAATAAGGGCGCTTTCCCGTTTAGTGAGAAACTGGGAGAGATCAGTGACAAGATTGGCAGCACAATTAACGACACTATAAACACGTTCCGCAGGAAAGACAGAGATGACTCGCCAGACAGATTCAGtGAGACAGAGGAGGACAGAAACAGAGATTTCCGAAACAGGCAGTCAGGCAGGACTGAATTCAAAGATGAAGAGGAGACAGTGACAACCAAAAGTGTTCAGATCGTTCAGGCCACCGAGACTACTGCCACGCGAAAGAAAGGAGCCACTCCATCAAAAACCATAGACCTGGGGGCAGCTGCCCATTACACTGGAGATGTGCCTGCCACAAACACAAATGCCACCAAGCAGCCAACTGTCTCAGGTACAAGTCAGTCCAGTGGTGGTCTGGTGGACTTGTTTATGGCAGATGCCACACCCATGAAGCCAGCTTCCACAGGTTCAAGCTCAGACCTGTTTGGAGGCTTTGCAGATTTCTCCTCACCTGCAGCTTCAGCCAGTCTTCCATCAGCAGCTGCCCCAGCATCTAGTGGTAATGCAGACTTTGGGGACTGGAACGCGTTTTCAGATGTGCAGCCAGCCCCTCCGCCTGTGAATCCTGCAGCAACAGACCTGTTTGCACCTGCTCCTGCCTCAGCAGTGCCCTCTGCTGACCTCTTTGACCTCATGGGTCCTTCTGTCAgcaccaacatcagtgcttcCCAAAGCATAAACTTCTCTATGACCTGCACTCAAAGCCCGGGCATGCCCATATCCAAGTCTCAGCCTCTGCAGAGTATGGGGACTCCACTGATGCCTCAGCAGTCTGTACAAAAGCAAGAAGCCAAGAAGTCCTCCATGCCATCCACTTGGTCTGATTCCAATGTCAACATCAGTCTGGACTACCTGGGTCCTGGCATGCAGCCTCCCAGACCAACTCAGCCCACACTCAACATGATGCAGCAGCATGgAGTTCAAGTCCCCGTCAACATGATGACACAGGGTTTTGCTGGCATGAATCTTGGCATGCAGCCCAGCTCTGCCCCTGTGCGACCCCCAACTAACCCCATGATGGGAAACATGGGCATGCCACCTGCCATGGGAGGCGGTGCTGTGGGCGTAACTCCTATGGGAGGCATGCCACTCAATCAGGGCATGATGggaatgaacatgaacatgggAATGCCAGGAGCTGTTGGCATGGGGATGGGAATGTCCGTGCCAGTCATGAGTATGAGCTCTGCCATGGCACAACAGAAGCACGATGCCTTTGCTGACTTTGCCAACTTTGGCAAATGAATAGGAGAGATGGAGGCTGTACGCTAGGACAATCTTTCTGGAAGGGAGGAGCATGAAGGATTTTTTAAAGAGCTGCAAACAAAGAGTACTTGAAAGATGTCGATTATGGCCGCCCAGATTTCTATTGTTCCTTACACAATACTGATGTGTAAAAGGGTGAATTTAATCAGTCTGGCCCAGGAGCCACATGGACAGTGGTTTGGCTTTGTATAACAGAGAAATATCTGATTGCACTTCCACTTAACATTGCTTTAAATTTTGAAAGAATCTTCAGGATCAcgtatatataaatgtaatgacATTGACTGGCCGCAAATACTATTCTCACTCTTTTATGTCCTTACTGAGGATTGTTCGATttgtctgatctgatctgaagtTATTCCCTGTCCTTTCCATTCTCTTATACATAACCTTGtaaatattattgaaaatgGACATAAGTTATTTAAATATGagattattaaatgaaatattaataatgagaTGTTTCAAATTATGGGAATCAGTGCAGAACTATAGCAAGCCGGAGCAAGTGAGAATCATGTTAAGAGCAACCGCTGTGGCCTTTGGAATgggaatatatttttatagaaatatgatctgttttgcatttttctgtgAATGTacatcagtcacacacagagGCTTTGGTCATTCAATGTCCTTACATACACAGTGCCTATCAACCTGTTGCCTATACCTTTTTCTCTTGAAAATTTCTTAAGACGATATGAGATTACAGTATTTATGACAGTACTGTAGACATCTGAGCATATATGTATGCacgatttattttttttatctgtttattcccCCATTTTCACTGCATGGCTAGTgtgaatgattaaaatgtttttttttttttttttatgttttctgaacCTGATAGGATTAAGTCTTTTCGTTATGCAAGTGATAATGAGCGAGTTGGGTTGAGGCTGTATACTGAGATGAGTGAGGTTCACTGTGCTGTTCTGCTCACCGAGTGGAATGTTGTATCTTTAAGACTATCTCTGTTTTGTCAGGAGCAGGGACTCGAACTGAAGCCTTTCCCTCCTGTTCAGAAgcagcacacgcacacacacacaatgaccaAATTCtgccttctctcttctcttttttccaagGGATtgacatgtcttttttttttatagtctgTTAGAGTATGTGTAAGATTGGGGTATCATGTATAGGGGCTATGGATCTTTACTGAAAAACACTATACTTTTTATGCAAAACTCAACCAACAAAACATCCCTTCTTCTAAGTGTATGTCCTCACATCCATACACTGATTTGATTGTACCCATGGTCTTTTATGTGAGAGATTAAAGAGTTGATTTTCATGTGGA
>XM_026917935.2
CTCGCGCAGCCTGAAACTAGTTTGGAGAGTTGAAGGTTTTGGTTTCGCGACAGCTGGACTTTCGCAACTACAGGATTAAAAGGGCTGGAAGACGTGTTACCGCGACGGAAAGCCTTAATCCACTGAGTCAAGATGCTGAATATGTGGAAAGTTAGAGAGCTGGTTGACAAAGCaacCAATGTTGTTATGAACTATTCAGAAACTGAATCTAAGGTTCGAGAGGCCACAAACGACGACCCATGGGGACCCTCTGGCCAGCTAATGGGAGAAATAGCCAAAGCTACATTCATGTATGAGCAGTTTCCAGAGGTAATGAACATGCTGTGGTACCGAATGCTGAAGGACAACAAGAAAAACTGGCGGAGAGTTTACAAGTCGTTACTGCTGCTGGGTTACCTGGTGCGAAACGGATCTGAGCGGGTGGTCACCAGCACACGAGAGCACCTGTATGACCTGCGCTCCATTGAGAGCTATCACTTTATAGATGAGAATGGGAAGGACCAAGGCATCAACGTGCGGCAGAAGGTAAAAGAGATGGTGGAGTTTGTGCAAGACGATGACAGGctgagagaagagaggaagaaggcCAAGAAAAACAGGGACAAATATATTGGCGTGTCCTCTGATAGCATGGGGGACTTCAGATACGCTGGCGACAGGTACGAGTCACGCTCCAAGTGGGATGATGACTGGGAGAGCAATAAGGGCGCTTTCCCGTTTAGTGAGAAACTGGGAGAGATCAGTGACAAGATTGGCAGCACAATTAACGACACTATAAACACGTTCCGCAGGAAAGACAGAGATGACTCGCCAGACAGATTCAGtGAGACAGAGGAGGACAGAAACAGAGATTTCCGAAACAGGCAGTCAGGCAGGACTGAATTCAAAGATGAAGAGGAGACAGTGACAACCAAAAGTGTTCAGATCGTTCAGGCCACCGAGACTACTGCCACGCGAAAGAAAGGAGCCACTCCATCAAAAACCATAGACCTGGGGGCAGCTGCCCATTACACTGGAGATGTGCCTGCCACAAACACAAATGCCACCAAGCCAACTGTCTCAGGTACAAGTCAGTCCAGTGGTGGTCTGGTGGACTTGTTTATGGCAGATGCCACACCCATGAAGCCAGCTTCCACAGGTTCAAGCTCAGACCTGTTTGGAGGCTTTGCAGATTTCTCCTCACCTGCAGCTTCAGCCAGTCTTCCATCAGCAGCTGCCCCAGCATCTAGTGGTAATGCAGACTTTGGGGACTGGAACGCGTTTTCAGATGTGCAGCCAGCCCCTCCGCCTGTGAATCCTGCAGCAACAGACCTGTTTGCACCTGCTCCTGCCTCAGCAGTGCCCTCTGCTGACCTCTTTGACCTCATGGGTCCTTCTGTCAgcaccaacatcagtgcttcCCAAAGCATAAACTTCTCTATGACCTGCACTCAAAGCCCGGGCATGCCCATATCCAAGTCTCAGCCTCTGCAGAGTATGGGGACTCCACTGATGCCTCAGCAGTCTGTACAAAAGCAAGAAGCCAAGAAGTCCTCCATGCCATCCACTTGGTCTGATTCCAATGTCAACATCAGTCTGGACTACCTGGGTCCTGGCATGCAGCCTCCCAGACCAACTCAGCCCACACTCAACATGATGCAGCAGCATGgAGTTCAAGTCCCCGTCAACATGATGACACAGGGTTTTGCTGGCATGAATCTTGGCATGCAGCCCAGCTCTGCCCCTGTGCGACCCCCAACTAACCCCATGATGGGAAACATGGGCATGCCACCTGCCATGGGAGGCGGTGCTGTGGGCGTAACTCCTATGGGAGGCATGCCACTCAATCAGGGCATGATGggaatgaacatgaacatgggAATGCCAGGAGCTGTTGGCATGGGGATGGGAATGTCCGTGCCAGTCATGAGTATGAGCTCTGCCATGGCACAACAGAAGCACGATGCCTTTGCTGACTTTGCCAACTTTGGCAAATGAATAGGAGAGATGGAGGCTGTACGCTAGGACAATCTTTCTGGAAGGGAGGAGCATGAAGGATTTTTTAAAGAGCTGCAAACAAAGAGTACTTGAAAGATGTCGATTATGGCCGCCCAGATTTCTATTGTTCCTTACACAATACTGATGTGTAAAAGGGTGAATTTAATCAGTCTGGCCCAGGAGCCACATGGACAGTGGTTTGGCTTTGTATAACAGAGAAATATCTGATTGCACTTCCACTTAACATTGCTTTAAATTTTGAAAGAATCTTCAGGATCAcgtatatataaatgtaatgacATTGACTGGCCGCAAATACTATTCTCACTCTTTTATGTCCTTACTGAGGATTGTTCGATttgtctgatctgatctgaagtTATTCCCTGTCCTTTCCATTCTCTTATACATAACCTTGtaaatattattgaaaatgGACATAAGTTATTTAAATATGagattattaaatgaaatattaataatgagaTGTTTCAAATTATGGGAATCAGTGCAGAACTATAGCAAGCCGGAGCAAGTGAGAATCATGTTAAGAGCAACCGCTGTGGCCTTTGGAATgggaatatatttttatagaaatatgatctgttttgcatttttctgtgAATGTacatcagtcacacacagagGCTTTGGTCATTCAATGTCCTTACATACACAGTGCCTATCAACCTGTTGCCTATACCTTTTTCTCTTGAAAATTTCTTAAGACGATATGAGATTACAGTATTTATGACAGTACTGTAGACATCTGAGCATATATGTATGCacgatttattttttttatctgtttattcccCCATTTTCACTGCATGGCTAGTgtgaatgattaaaatgtttttttttttttttttatgttttctgaacCTGATAGGATTAAGTCTTTTCGTTATGCAAGTGATAATGAGCGAGTTGGGTTGAGGCTGTATACTGAGATGAGTGAGGTTCACTGTGCTGTTCTGCTCACCGAGTGGAATGTTGTATCTTTAAGACTATCTCTGTTTTGTCAGGAGCAGGGACTCGAACTGAAGCCTTTCCCTCCTGTTCAGAAgcagcacacgcacacacacacaatgaccaAATTCtgccttctctcttctcttttttccaagGGATtgacatgtcttttttttttatagtctgTTAGAGTATGTGTAAGATTGGGGTATCATGTATAGGGGCTATGGATCTTTACTGAAAAACACTATACTTTTTATGCAAAACTCAACCAACAAAACATCCCTTCTTCTAAGTGTATGTCCTCACATCCATACACTGATTTGATTGTACCCATGGTCTTTTATGTGAGAGATTAAAGAGTTGATTTTCATGTGGA

Function

symbol description
clint1 Enables clathrin binding activity. Predicted to be involved in endocytosis. Located in Golgi apparatus and nucleoplasm.

NR:

description
PREDICTED: clathrin interactor 1 isoform X2

GO:

id name namespace
GO:0045682 regulation of epidermis development biological_process

KEGG:

id description
K24721 CLINT1, EPN4; clathrin interactor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917934.2 True 3334 mRNA 0.45 12 14600113 14621406
XM_026917935.2 False 3331 mRNA 0.45 12 14600113 14621406

Neighbor

gene id symbol gene type direction distance location
zbtb3 zbtb3 coding downstream 5454 14591624 ~ 14594659 (-)
trmt12 trmt12 coding downstream 14686 14576136 ~ 14585427 (-)
sytl4 sytl4 coding downstream 24490 14560234 ~ 14575623 (-)
tspan7 tspan6 coding downstream 64156 14529981 ~ 14535957 (-)
mid1ip1l LOC108269374,LOC108427811,LOC107680990 coding downstream 71575 14526759 ~ 14528538 (-)
rnf145a rnf145,rnf145a,LOC107723822,LOC107669103,LOC107664350,LOC107740095 coding upstream 164677 14786083 ~ 14823173 (-)
il12ba NA coding upstream 219774 14841180 ~ 14854258 (-)
sh3tc2 sh3tc2 coding upstream 296590 14917996 ~ 14932160 (-)
pttg1 LOC108268450 coding upstream 418197 15039603 ~ 15042499 (-)
foxi3b LOC108269392,LOC108427851 coding upstream 429954 15051360 ~ 15053378 (-)
G115143 NA non-coding downstream 59805 14540108 ~ 14540308 (-)
G115100 NA non-coding downstream 125648 14468250 ~ 14474465 (-)
G114761 NA non-coding downstream 565218 14034642 ~ 14034895 (-)
G114739 NA non-coding downstream 611303 13988570 ~ 13988810 (-)
G114729 NA non-coding downstream 624187 13975725 ~ 13975926 (-)
G115325 NA non-coding upstream 124533 14745939 ~ 14747993 (-)
G115329 NA non-coding upstream 163923 14785329 ~ 14786018 (-)
G115331 NA non-coding upstream 182048 14803454 ~ 14804191 (-)
LOC113528719 NA non-coding upstream 386305 15007711 ~ 15016373 (-)
G115477 NA non-coding upstream 511791 15133197 ~ 15133435 (-)
G114873 NA other downstream 378258 14220316 ~ 14221855 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683,LOC107593230 other downstream 684525 13841619 ~ 13915588 (-)
G114460 NA other downstream 1049338 13547512 ~ 13550775 (-)
fbxo38 fbxo38 other downstream 1572158 12934557 ~ 13027955 (-)
G114215 NA other downstream 1904604 12694771 ~ 12695509 (-)
ebf1a ebf1,ebf1a,LOC105011268 other upstream 48783 14670189 ~ 14775493 (-)
tmsb2 NA other upstream 459378 15080784 ~ 15082504 (-)
apln apln other upstream 895648 15517054 ~ 15540726 (-)
ndufa1 NA other upstream 1106244 15727650 ~ 15729388 (-)
G115842 dlg3,LOC107751999 other upstream 1229615 15851021 ~ 15852220 (-)

Expression


Co-expression Network