rnf145a (rnf145,rnf145a,LOC107723822,LOC107669103,LOC107664350,LOC107740095)


Basic Information

Item Value
gene id rnf145a
gene name rnf145,rnf145a,LOC107723822,LOC107669103,LOC107664350,LOC107740095
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 14786083 ~ 14823173 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918119.2
TGCTCAGTAGCGCCCCCAATTCCTCTACTCCTCTCTTTAATGGCTGCGGGATGAAGCGAATAGAGTCGAGGTCTGCGTGTCTTTTTTCGTTATGGATGCCGCTTCCCTGAGTCTGCTACGCGCTGTATTGCCCTTCAAGCATGGCTGACATTCGACCGGAGAAACGTCGCGAATCGTAGCCTAGAGGAGTTGCGGTGGTTACTGGTTCTTGGGACAGCCAGGTGTGCGATGGCGGTGAAGGAGCGCTTAGAGGCTGTGCTGAATGTGGGCCTACGGGTTCCCAGCATCATGCTGCTGGAGGTGCTATACCGCTGGGATGTGAGCTCCTTCTTCCAGAAGATCCAAAGGAGCAGTATGAACAACAACCCCCTCTTCCAGTACAAGTACCTAGCTCTCTACCTTCACTATGTAGGCTATATTCTGAGTCTGGTTTTGCTGACCCTGCCTCGTCAGCGTCTTGTTCAGCTCTACCTGTACGTCCTCACTGCTCTACTGCTTTTCGCTGGACACCAGATTTCAAGGGACTATGTACGTGGTGAGCTGGAGTCTGGGTATGAGGGCCCGCTCTACTTGGAGCCTCTGTCTATGAATCGCTTCACCACGGCCCTGATCTGCCAGCTGGTGGTGTGTACTCTGTGCTCATGCGTCATGCAGACCAAGCGGATCTGGCTCTTTTCGGCCCACTTACTCCCCCTGGTGGCCAGATTGTGTCTCGTGCCTCTGGAGACCATTGTGTTTGTAAATCGCTTTGCCATGATTTTCACCGGACTAGAGGTCATCTACTTCCTAGCCTCTAACCTGCTAGTGCCTTTCAACCTCGCCAAGACTGCATACAGGGAGCTGGCACAGGTGGTGGAGGTGTATGGGCTTCTGGCCCTTGGCATGTCTCTGTGGAATCAGCTTGTTTTGCCCGTGCTGTTCATGTGCTTCTGGCTAGTTCTGTTTGCTCTGCAGATCTACACCTATTTCAGCACCCGGGACCAGCCCACTTCCAGGGAGAGGttgcttttcctctttctcaccAGtATTGCAGAATGCTGTAGTACCCCATACTCTCTGCTTGGACTGGTGTTCACTGTGTCATTTGTAGCTCTGGGTGTGCTTACTCTCTGCAAGTTCTACCTGCAAGGCTACAGGGCCTTCATGAACGATAACACAATGCACAGGGGAATGACTGAGGGAATCACGCTGTTGATTCTGGCAGTTCAGACTGGTCTAATTGAGCTCCAGGTCATCCACCGAGCCTTCCTTCTCAGTATCATTCTCTTCATTGTGGTTGCTTCCATTTTGCAGTCCATGCTGGAGATCGCTGACCCCATAGTGCTGGCACTAGGGGCATCCAGAGATAAGAGCTTGTGGAAACACTTCCGTGCAGTTAGTCTTTGCCTGTTTCTACTCGTATTCCCAGCTTACATGTCCTACATGATCTGCCAGTTCTTCCACATGGACTTCTGgcttctcatcatcatctcctccAGCATCCTTACATCTTTGCAGGTGTTGGGCACACTGCTGATCTATGTGCTCTTCATGGTGGAGGAGTTGCGCAAGGTGCCGATGGAGAACATGGACGACGTGATCTACTGCGTGAACGGCACCTACCGGATGCTGGAGTTTGTGGTAGCTCTGTGTGTGGTGGCGTATGGCGTTTGTGAGACAGTGTTTGGTGAATGGACTGTGATGGGCTCCACTATTGTACTTGTACATTCCTACTACAATGTGTGGCTGCGGGCACAGCTGGGTTGGCAAAGCTTTTTACTCCGTCGCGATGCCGTCAACAAGATCAAGAGCCTGCCTACAGCCTCTGAACAGCAGTTGCAGCAACACAATGACATCTGCTCCATCTGCTATCAGGACATGACTTCAGCTGTCATCACACCATGTAATCACTTCTTCCATGCTGGCTGTTTGAAGAAGTGGCTGTATGTGCAGGAAGCCTGCCCTCTGTGCCACAACCAGCTAAAGAGCTCGGGACAACGGGAGGGCGGTATGGATGTGCCGCCACAACCTGATGCCACCATCCAGGAGGCCCAGCCCGAGGCACCCATGCCTGCCTCAGCTTCAGCGGAGGTGGAAAATGGCGAGGAAGGGGAAGTGGAGGCCAGCACTCCTGCTGAGACTGAGCTTCCTCCGTCCTCTTCCACAGGCTAATGGCTGCTCTTGCCAGGCTGTCAGCCCAGAAATGAGCCACACCCCCTCTGATGTCATACTCAGTAAATGCTGGCCAAAGGAGGCGAAATGTTTCTGAATATGGGATTCGGTGGGTAGCAGCGTTACTGATGTGGTAGCTGTAGGACCTGTGTGCCCAACAGACATCCTTACAATCAAACACTCCATATTATGTCCTTTGTACTTATCTGTAAACCTGTTGCTGCTTTTACAACTTCCATTTCTGTTCATTGCAGTGGCATTTTGCTAATAGGAATGCCTGAACACTTACCCCCAAATACATACAAACGTCAGCTTGCAAACCTGCGCCACTTCCATGTCTATCCAAGGCCTAGAGGACTACAAATGGGTTCTAGACCCATCAACTGTTACAAAACCGTTTACCAAACTGAATGTGACCATGTGTCCCTTAGACAGTGCATTGGTGCGCTATATGCACCCAGTACATATTCACTAGCACGCTTTTAGTATCCACAAATAGCAGTAGTGATATgggttattttttgttttgttttgttttttgttttgttttttgtttttatagtttatatatatatatatatatatatata
>XM_034305996.1
agtcatttaccactttaaccagcgctgtcttaGTGCAGTGATGAGGCCTAGCTTATAGATTCTGATAGAttttatgaatgttattcctgtgTATGGATGAGAATAACTTCTGTGCTATAACGTTATCTTGGATCTTGGTAAAGGGGATGTTTGATATTGGTCTGtagttggacagctgacaggggttgagTGGGACAGCCAGGTGTGCGATGGCGGTGAAGGAGCGCTTAGAGGCTGTGCTGAATGTGGGCCTACGGGTTCCCAGCATCATGCTGCTGGAGGTGCTATACCGCTGGGATGTGAGCTCCTTCTTCCAGAAGATCCAAAGGAGCAGTATGAACAACAACCCCCTCTTCCAGTACAAGTACCTAGCTCTCTACCTTCACTATGTAGGCTATATTCTGAGTCTGGTTTTGCTGACCCTGCCTCGTCAGCGTCTTGTTCAGCTCTACCTGTACGTCCTCACTGCTCTACTGCTTTTCGCTGGACACCAGATTTCAAGGGACTATGTACGTGGTGAGCTGGAGTCTGGGTATGAGGGCCCGCTCTACTTGGAGCCTCTGTCTATGAATCGCTTCACCACGGCCCTGATCTGCCAGCTGGTGGTGTGTACTCTGTGCTCATGCGTCATGCAGACCAAGCGGATCTGGCTCTTTTCGGCCCACTTACTCCCCCTGGTGGCCAGATTGTGTCTCGTGCCTCTGGAGACCATTGTGTTTGTAAATCGCTTTGCCATGATTTTCACCGGACTAGAGGTCATCTACTTCCTAGCCTCTAACCTGCTAGTGCCTTTCAACCTCGCCAAGACTGCATACAGGGAGCTGGCACAGGTGGTGGAGGTGTATGGGCTTCTGGCCCTTGGCATGTCTCTGTGGAATCAGCTTGTTTTGCCCGTGCTGTTCATGTGCTTCTGGCTAGTTCTGTTTGCTCTGCAGATCTACACCTATTTCAGCACCCGGGACCAGCCCACTTCCAGGGAGAGGttgcttttcctctttctcaccAGtATTGCAGAATGCTGTAGTACCCCATACTCTCTGCTTGGACTGGTGTTCACTGTGTCATTTGTAGCTCTGGGTGTGCTTACTCTCTGCAAGTTCTACCTGCAAGGCTACAGGGCCTTCATGAACGATAACACAATGCACAGGGGAATGACTGAGGGAATCACGCTGTTGATTCTGGCAGTTCAGACTGGTCTAATTGAGCTCCAGGTCATCCACCGAGCCTTCCTTCTCAGTATCATTCTCTTCATTGTGGTTGCTTCCATTTTGCAGTCCATGCTGGAGATCGCTGACCCCATAGTGCTGGCACTAGGGGCATCCAGAGATAAGAGCTTGTGGAAACACTTCCGTGCAGTTAGTCTTTGCCTGTTTCTACTCGTATTCCCAGCTTACATGTCCTACATGATCTGCCAGTTCTTCCACATGGACTTCTGgcttctcatcatcatctcctccAGCATCCTTACATCTTTGCAGGTGTTGGGCACACTGCTGATCTATGTGCTCTTCATGGTGGAGGAGTTGCGCAAGGTGCCGATGGAGAACATGGACGACGTGATCTACTGCGTGAACGGCACCTACCGGATGCTGGAGTTTGTGGTAGCTCTGTGTGTGGTGGCGTATGGCGTTTGTGAGACAGTGTTTGGTGAATGGACTGTGATGGGCTCCACTATTGTACTTGTACATTCCTACTACAATGTGTGGCTGCGGGCACAGCTGGGTTGGCAAAGCTTTTTACTCCGTCGCGATGCCGTCAACAAGATCAAGAGCCTGCCTACAGCCTCTGAACAGCAGTTGCAGCAACACAATGACATCTGCTCCATCTGCTATCAGGACATGACTTCAGCTGTCATCACACCATGTAATCACTTCTTCCATGCTGGCTGTTTGAAGAAGTGGCTGTATGTGCAGGAAGCCTGCCCTCTGTGCCACAACCAGCTAAAGAGCTCGGGACAACGGGAGGGCGGTATGGATGTGCCGCCACAACCTGATGCCACCATCCAGGAGGCCCAGCCCGAGGCACCCATGCCTGCCTCAGCTTCAGCGGAGGTGGAAAATGGCGAGGAAGGGGAAGTGGAGGCCAGCACTCCTGCTGAGACTGAGCTTCCTCCGTCCTCTTCCACAGGCTAATGGCTGCTCTTGCCAGGCTGTCAGCCCAGAAATGAGCCACACCCCCTCTGATGTCATACTCAGTAAATGCTGGCCAAAGGAGGCGAAATGTTTCTGAATATGGGATTCGGTGGGTAGCAGCGTTACTGATGTGGTAGCTGTAGGACCTGTGTGCCCAACAGACATCCTTACAATCAAACACTCCATATTATGTCCTTTGTACTTATCTGTAAACCTGTTGCTGCTTTTACAACTTCCATTTCTGTTCATTGCAGTGGCATTTTGCTAATAGGAATGCCTGAACACTTACCCCCAAATACATACAAACGTCAGCTTGCAAACCTGCGCCACTTCCATGTCTATCCAAGGCCTAGAGGACTACAAATGGGTTCTAGACCCATCAACTGTTACAAAACCGTTTACCAAACTGAATGTGACCATGTGTCCCTTAGACAGTGCATTGGTGCGCTATATGCACCCAGTACATATTCACTAGCACGCTTTTAGTATCCACAAATAGCAGTAGTGATATgggttattttttgttttgttttgttttttgttttgttttttgtttttatagtttatatatatatatatatatatatata
>XM_034305997.1
gtttatttaaaatactgcAACAGGCGTATTCTGCTTCAGATTCCCATCTAATTGGACGGTCGCACCTCATGAATTTTTAATGAGTGCTCGGTTACTGGAGTTCATTGGCATTTTCTGACTATGGCGCCCAAGGCAGCAGTGGGACAGCCAGGTGTGCGATGGCGGTGAAGGAGCGCTTAGAGGCTGTGCTGAATGTGGGCCTACGGGTTCCCAGCATCATGCTGCTGGAGGTGCTATACCGCTGGGATGTGAGCTCCTTCTTCCAGAAGATCCAAAGGAGCAGTATGAACAACAACCCCCTCTTCCAGTACAAGTACCTAGCTCTCTACCTTCACTATGTAGGCTATATTCTGAGTCTGGTTTTGCTGACCCTGCCTCGTCAGCGTCTTGTTCAGCTCTACCTGTACGTCCTCACTGCTCTACTGCTTTTCGCTGGACACCAGATTTCAAGGGACTATGTACGTGGTGAGCTGGAGTCTGGGTATGAGGGCCCGCTCTACTTGGAGCCTCTGTCTATGAATCGCTTCACCACGGCCCTGATCTGCCAGCTGGTGGTGTGTACTCTGTGCTCATGCGTCATGCAGACCAAGCGGATCTGGCTCTTTTCGGCCCACTTACTCCCCCTGGTGGCCAGATTGTGTCTCGTGCCTCTGGAGACCATTGTGTTTGTAAATCGCTTTGCCATGATTTTCACCGGACTAGAGGTCATCTACTTCCTAGCCTCTAACCTGCTAGTGCCTTTCAACCTCGCCAAGACTGCATACAGGGAGCTGGCACAGGTGGTGGAGGTGTATGGGCTTCTGGCCCTTGGCATGTCTCTGTGGAATCAGCTTGTTTTGCCCGTGCTGTTCATGTGCTTCTGGCTAGTTCTGTTTGCTCTGCAGATCTACACCTATTTCAGCACCCGGGACCAGCCCACTTCCAGGGAGAGGttgcttttcctctttctcaccAGtATTGCAGAATGCTGTAGTACCCCATACTCTCTGCTTGGACTGGTGTTCACTGTGTCATTTGTAGCTCTGGGTGTGCTTACTCTCTGCAAGTTCTACCTGCAAGGCTACAGGGCCTTCATGAACGATAACACAATGCACAGGGGAATGACTGAGGGAATCACGCTGTTGATTCTGGCAGTTCAGACTGGTCTAATTGAGCTCCAGGTCATCCACCGAGCCTTCCTTCTCAGTATCATTCTCTTCATTGTGGTTGCTTCCATTTTGCAGTCCATGCTGGAGATCGCTGACCCCATAGTGCTGGCACTAGGGGCATCCAGAGATAAGAGCTTGTGGAAACACTTCCGTGCAGTTAGTCTTTGCCTGTTTCTACTCGTATTCCCAGCTTACATGTCCTACATGATCTGCCAGTTCTTCCACATGGACTTCTGgcttctcatcatcatctcctccAGCATCCTTACATCTTTGCAGGTGTTGGGCACACTGCTGATCTATGTGCTCTTCATGGTGGAGGAGTTGCGCAAGGTGCCGATGGAGAACATGGACGACGTGATCTACTGCGTGAACGGCACCTACCGGATGCTGGAGTTTGTGGTAGCTCTGTGTGTGGTGGCGTATGGCGTTTGTGAGACAGTGTTTGGTGAATGGACTGTGATGGGCTCCACTATTGTACTTGTACATTCCTACTACAATGTGTGGCTGCGGGCACAGCTGGGTTGGCAAAGCTTTTTACTCCGTCGCGATGCCGTCAACAAGATCAAGAGCCTGCCTACAGCCTCTGAACAGCAGTTGCAGCAACACAATGACATCTGCTCCATCTGCTATCAGGACATGACTTCAGCTGTCATCACACCATGTAATCACTTCTTCCATGCTGGCTGTTTGAAGAAGTGGCTGTATGTGCAGGAAGCCTGCCCTCTGTGCCACAACCAGCTAAAGAGCTCGGGACAACGGGAGGGCGGTATGGATGTGCCGCCACAACCTGATGCCACCATCCAGGAGGCCCAGCCCGAGGCACCCATGCCTGCCTCAGCTTCAGCGGAGGTGGAAAATGGCGAGGAAGGGGAAGTGGAGGCCAGCACTCCTGCTGAGACTGAGCTTCCTCCGTCCTCTTCCACAGGCTAATGGCTGCTCTTGCCAGGCTGTCAGCCCAGAAATGAGCCACACCCCCTCTGATGTCATACTCAGTAAATGCTGGCCAAAGGAGGCGAAATGTTTCTGAATATGGGATTCGGTGGGTAGCAGCGTTACTGATGTGGTAGCTGTAGGACCTGTGTGCCCAACAGACATCCTTACAATCAAACACTCCATATTATGTCCTTTGTACTTATCTGTAAACCTGTTGCTGCTTTTACAACTTCCATTTCTGTTCATTGCAGTGGCATTTTGCTAATAGGAATGCCTGAACACTTACCCCCAAATACATACAAACGTCAGCTTGCAAACCTGCGCCACTTCCATGTCTATCCAAGGCCTAGAGGACTACAAATGGGTTCTAGACCCATCAACTGTTACAAAACCGTTTACCAAACTGAATGTGACCATGTGTCCCTTAGACAGTGCATTGGTGCGCTATATGCACCCAGTACATATTCACTAGCACGCTTTTAGTATCCACAAATAGCAGTAGTGATATgggttattttttgttttgttttgttttttgttttgttttttgtttttatagtttatatatatatatatatatatatata

Function

symbol description
rnf145a Predicted to enable zinc ion binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human RNF145 (ring finger protein 145).
rnf145 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum.

NR:

description
PREDICTED: RING finger protein 145

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K23789 RNF145; E3 ubiquitin-protein ligase RNF145

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918119.2 True 2741 mRNA 0.50 11 14786083 14823173
XM_034305996.1 False 2722 mRNA 0.49 11 14786083 14816152
XM_034305997.1 False 2671 mRNA 0.50 11 14786083 14822548

Neighbor

gene id symbol gene type direction distance location
clint1a clint1,LOC108427862 coding downstream 164677 14600113 ~ 14621406 (-)
zbtb3 zbtb3 coding downstream 191424 14591624 ~ 14594659 (-)
trmt12 trmt12 coding downstream 200656 14576136 ~ 14585427 (-)
sytl4 sytl4 coding downstream 210460 14560234 ~ 14575623 (-)
tspan7 tspan6 coding downstream 250126 14529981 ~ 14535957 (-)
il12ba NA coding upstream 18007 14841180 ~ 14854258 (-)
sh3tc2 sh3tc2 coding upstream 94823 14917996 ~ 14932160 (-)
pttg1 LOC108268450 coding upstream 216430 15039603 ~ 15042499 (-)
foxi3b LOC108269392,LOC108427851 coding upstream 228187 15051360 ~ 15053378 (-)
LOC113528773 wnt8-2,LOC108268465,LOC108427847,LOC103036102,LOC106604410,LOC107752032,LOC107664333,LOC107669112 coding upstream 246650 15069823 ~ 15071886 (-)
G115329 NA non-coding downstream 65 14785329 ~ 14786018 (-)
G115325 NA non-coding downstream 38090 14745939 ~ 14747993 (-)
G115143 NA non-coding downstream 245775 14540108 ~ 14540308 (-)
G115100 NA non-coding downstream 311618 14468250 ~ 14474465 (-)
G114761 NA non-coding downstream 751188 14034642 ~ 14034895 (-)
LOC113528719 NA non-coding upstream 184538 15007711 ~ 15016373 (-)
G115477 NA non-coding upstream 310024 15133197 ~ 15133435 (-)
G115553 NA non-coding upstream 495567 15318740 ~ 15318949 (-)
G115554 NA non-coding upstream 497847 15321020 ~ 15321301 (-)
G115620 zdhhc24,LOC107744556,LOC107752023 non-coding upstream 577394 15400567 ~ 15402679 (-)
ebf1a ebf1,ebf1a,LOC105011268 other downstream 10590 14670189 ~ 14775493 (-)
G114873 NA other downstream 564228 14220316 ~ 14221855 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683,LOC107593230 other downstream 870495 13841619 ~ 13915588 (-)
G114460 NA other downstream 1235308 13547512 ~ 13550775 (-)
fbxo38 fbxo38 other downstream 1758128 12934557 ~ 13027955 (-)
tmsb2 NA other upstream 257611 15080784 ~ 15082504 (-)
apln apln other upstream 693881 15517054 ~ 15540726 (-)
ndufa1 NA other upstream 904477 15727650 ~ 15729388 (-)
G115842 dlg3,LOC107751999 other upstream 1027848 15851021 ~ 15852220 (-)
G116014 slc25a5,LOC104931197,LOC101464643,LOC102200398,LOC106515500,LOC103395576,LOC108430428 other upstream 1245562 16068735 ~ 16071362 (-)

Expression


Co-expression Network