trmt12 (trmt12)


Basic Information

Item Value
gene id trmt12
gene name trmt12
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 14576136 ~ 14585427 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918205.2
CCTATGTTGATTTGAATCAGCTAAATGAATGCACGTGTGTATCAGACATTCACTTCTGCTCTTTGATAGTATCCTTAGTAACCGCTCACACATGGATTACGTCACAGCTCTGAAGGTGCCACAACGGTCTGCACAGCTTTACAGAAAGCATCTGTTAGAGAAGGGAGCTTTAGACCCGCAGTACTGTGTACAAAAACACTTGGATGGAACGGTGACTCTCCCAGTCTTCCCATCTGCTCTGTGTCACCTGGATCCTCTCACACTGCAGAGCTCTGTGGCTCAGGACAGCTCCTGTCAAATAGTTCAAATACAGGCTCCTCAGCTGTCCAAAAAAAGCAAAGCGAAGCCTCATCGACAGAGAATGATTGAGGTTGTGCAGGAACTGGTGGCTACTAAAGGAGTGAAATGGAGTAAGGAGCTTGAAGATGACATGCCCAATGGATGGCAGCGGCATGGAGATCTGCTTCTGTTTGGTGATGGATGCTTTTCACAAGCAATCTGGAGAAAATTTGGCTCTGAGTTGTGGTTGGCTGTTGCCCAAGTCCTGGGAGTGAAGCGTctagcacaaataaaacagatttcCCAGGATGGATGGCGAACACCAGTGGTAACAATGCTATTAGGAGACGACAGCTACGTAACTCACATTGATAACCACATCAGGTATGAATTTGATGTCAGGAAGTGCATGTTCTCCTTCGGAAACATCACAGAGAAACTGCGAATATCCTCCTTTGACTGCACTGGAGAGACCGTGGTTGACCTGTATGCAGGAATTGGCTACTTCACCCTGCCGTATCTGGTCCATGCTGGCGCTGCCCATGTGCACGCATGTGAATGGAACCCAGATGCAGTTTCAGCACTGCGAAGAAACCTGCACATTAATAAAGTAGCCCATCGTTGCACTGTGCATGAAGGAGACAACAAACAACTGTCCCTGAATGACTTGGCCGACCGAGTGAATCTAGGCCTGATACCAAGCTCTGAAGAGGGCTGGCCTGTGGCATGCCAGCTCCTGCGGAGAAACACTGGTGGAATATTGCATATCCACAACAATGTCACCACACTGATCCAGCATCAGAATCTTCAGCCAGCCTCCAATTCACTGAATGAGGGAGATGGATCTGTAAATGGAACTGTAAAAATTTCTAGAGACAGAGAAGTGTGGAACAACTGGGCTGAAAACACAGCGAGTCACATCGTCAAACTTCTGAGAGACATCACCAGAGCAGAGTGGAGAACCAGCATTAAGCATATAGAGCATGTGAAGTCCTATGCACCACACATAAATCACATAGTGTTGGATCTAGAGTGTAGACCAATCAGATAAGTTGGCTGACAGTCTTCTTTCTGTAtgcaactttttttgtttttaatgaaacagaataaaatgttcTGACTTTGCTTGGCACCATGTACCACAGAATGCAAGCCAGTCACCAATAATTGTAAACAAATCATTACTGTGGCGGTTTGCCCTGTAGCATTCATTTGAATTTTCCAGTGAGCAGTGAAATAACaagctgtggtgtgtgtgtgtgtgtgtgtgtgtacgtacagTGTTTTAGCATTCTTGCACCAAGTTTTCTCATACtggtattattattttatattatacagttggtttaattaaaatgtagcCTTCtaa
>XM_026918207.2
CTCTAACAGCATACTATGAGTTAATTCTTTAAAAGTCTGTTATATATACCaatctagaaaaaaatagacataCTTTATGCGAGTTTGTACATTAGAGGTTCGTTAAATTCAAATGCTAACTACGTCGTTGATGTGCGCGTGATGTACACAACAGCGGCGGAGTGAGTTGAATGCTGCTCCCTGGCATTTGGATCATTAAAGcagtataatatacaataatataaagtTTATTAGCGCTTACAGCGGCGCCAGATGTGCTTCTGTCCGTCATCTGTTAAGTACTGTTCGTGGTGCATGATAGGTCAGTATCCTTAGTAACCGCTCACACATGGATTACGTCACAGCTCTGAAGGTGCCACAACGGTCTGCACAGCTTTACAGAAAGCATCTGTTAGAGAAGGGAGCTTTAGACCCGCAGTACTGTGTACAAAAACACTTGGATGGAACGGTGACTCTCCCAGTCTTCCCATCTGCTCTGTGTCACCTGGATCCTCTCACACTGCAGAGCTCTGTGGCTCAGGACAGCTCCTGTCAAATAGTTCAAATACAGGCTCCTCAGCTGTCCAAAAAAAGCAAAGCGAAGCCTCATCGACAGAGAATGATTGAGGTTGTGCAGGAACTGGTGGCTACTAAAGGAGTGAAATGGAGTAAGGAGCTTGAAGATGACATGCCCAATGGATGGCAGCGGCATGGAGATCTGCTTCTGTTTGGTGATGGATGCTTTTCACAAGCAATCTGGAGAAAATTTGGCTCTGAGTTGTGGTTGGCTGTTGCCCAAGTCCTGGGAGTGAAGCGTctagcacaaataaaacagatttcCCAGGATGGATGGCGAACACCAGTGGTAACAATGCTATTAGGAGACGACAGCTACGTAACTCACATTGATAACCACATCAGGTATGAATTTGATGTCAGGAAGTGCATGTTCTCCTTCGGAAACATCACAGAGAAACTGCGAATATCCTCCTTTGACTGCACTGGAGAGACCGTGGTTGACCTGTATGCAGGAATTGGCTACTTCACCCTGCCGTATCTGGTCCATGCTGGCGCTGCCCATGTGCACGCATGTGAATGGAACCCAGATGCAGTTTCAGCACTGCGAAGAAACCTGCACATTAATAAAGTAGCCCATCGTTGCACTGTGCATGAAGGAGACAACAAACAACTGTCCCTGAATGACTTGGCCGACCGAGTGAATCTAGGCCTGATACCAAGCTCTGAAGAGGGCTGGCCTGTGGCATGCCAGCTCCTGCGGAGAAACACTGGTGGAATATTGCATATCCACAACAATGTCACCACACTGATCCAGCATCAGAATCTTCAGCCAGCCTCCAATTCACTGAATGAGGGAGATGGATCTGTAAATGGAACTGTAAAAATTTCTAGAGACAGAGAAGTGTGGAACAACTGGGCTGAAAACACAGCGAGTCACATCGTCAAACTTCTGAGAGACATCACCAGAGCAGAGTGGAGAACCAGCATTAAGCATATAGAGCATGTGAAGTCCTATGCACCACACATAAATCACATAGTGTTGGATCTAGAGTGTAGACCAATCAGATAAGTTGGCTGACAGTCTTCTTTCTGTAtgcaactttttttgtttttaatgaaacagaataaaatgttcTGACTTTGCTTGGCACCATGTACCACAGAATGCAAGCCAGTCACCAATAATTGTAAACAAATCATTACTGTGGCGGTTTGCCCTGTAGCATTCATTTGAATTTTCCAGTGAGCAGTGAAATAACaagctgtggtgtgtgtgtgtgtgtgtgtgtgtacgtacagTGTTTTAGCATTCTTGCACCAAGTTTTCTCATACtggtattattattttatattatacagttggtttaattaaaatgtagcCTTCtaa
>XM_026918208.2
tatataaagtatatagaaaagttttttttattatttatgtaaacCCGGAAGTAATGCGACTCATGTGCAACACATAAATATTCCGACTAGGAACTTGAGCCAAAACACGAGTATCCTTAGTAACCGCTCACACATGGATTACGTCACAGCTCTGAAGGTGCCACAACGGTCTGCACAGCTTTACAGAAAGCATCTGTTAGAGAAGGGAGCTTTAGACCCGCAGTACTGTGTACAAAAACACTTGGATGGAACGGTGACTCTCCCAGTCTTCCCATCTGCTCTGTGTCACCTGGATCCTCTCACACTGCAGAGCTCTGTGGCTCAGGACAGCTCCTGTCAAATAGTTCAAATACAGGCTCCTCAGCTGTCCAAAAAAAGCAAAGCGAAGCCTCATCGACAGAGAATGATTGAGGTTGTGCAGGAACTGGTGGCTACTAAAGGAGTGAAATGGAGTAAGGAGCTTGAAGATGACATGCCCAATGGATGGCAGCGGCATGGAGATCTGCTTCTGTTTGGTGATGGATGCTTTTCACAAGCAATCTGGAGAAAATTTGGCTCTGAGTTGTGGTTGGCTGTTGCCCAAGTCCTGGGAGTGAAGCGTctagcacaaataaaacagatttcCCAGGATGGATGGCGAACACCAGTGGTAACAATGCTATTAGGAGACGACAGCTACGTAACTCACATTGATAACCACATCAGGTATGAATTTGATGTCAGGAAGTGCATGTTCTCCTTCGGAAACATCACAGAGAAACTGCGAATATCCTCCTTTGACTGCACTGGAGAGACCGTGGTTGACCTGTATGCAGGAATTGGCTACTTCACCCTGCCGTATCTGGTCCATGCTGGCGCTGCCCATGTGCACGCATGTGAATGGAACCCAGATGCAGTTTCAGCACTGCGAAGAAACCTGCACATTAATAAAGTAGCCCATCGTTGCACTGTGCATGAAGGAGACAACAAACAACTGTCCCTGAATGACTTGGCCGACCGAGTGAATCTAGGCCTGATACCAAGCTCTGAAGAGGGCTGGCCTGTGGCATGCCAGCTCCTGCGGAGAAACACTGGTGGAATATTGCATATCCACAACAATGTCACCACACTGATCCAGCATCAGAATCTTCAGCCAGCCTCCAATTCACTGAATGAGGGAGATGGATCTGTAAATGGAACTGTAAAAATTTCTAGAGACAGAGAAGTGTGGAACAACTGGGCTGAAAACACAGCGAGTCACATCGTCAAACTTCTGAGAGACATCACCAGAGCAGAGTGGAGAACCAGCATTAAGCATATAGAGCATGTGAAGTCCTATGCACCACACATAAATCACATAGTGTTGGATCTAGAGTGTAGACCAATCAGATAAGTTGGCTGACAGTCTTCTTTCTGTAtgcaactttttttgtttttaatgaaacagaataaaatgttcTGACTTTGCTTGGCACCATGTACCACAGAATGCAAGCCAGTCACCAATAATTGTAAACAAATCATTACTGTGGCGGTTTGCCCTGTAGCATTCATTTGAATTTTCCAGTGAGCAGTGAAATAACaagctgtggtgtgtgtgtgtgtgtgtgtgtgtacgtacagTGTTTTAGCATTCTTGCACCAAGTTTTCTCATACtggtattattattttatattatacagttggtttaattaaaatgtagcCTTCtaa

Function

symbol description
trmt12 Predicted to enable tRNA methyltransferase activity. Predicted to be involved in tRNA methylation. Predicted to act upstream of or within exocytosis and tRNA processing. Predicted to be located in membrane. Predicted to be active in cytoplasm. Orthologous to human TRMT12 (tRNA methyltransferase 12 homolog).

NR:

description
LOW QUALITY PROTEIN: tRNA wybutosine-synthesizing protein 2 homolog

GO:

id name namespace
GO:0008033 tRNA processing biological_process
GO:0006810 transport biological_process
GO:0032259 methylation biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0008168 methyltransferase activity molecular_function
GO:0005215 transporter activity molecular_function

KEGG:

id description
K07055 TRM12, TYW2; tRNA wybutosine-synthesizing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918205.2 False 1648 mRNA 0.45 7 14576136 14584978
XM_026918207.2 True 1885 mRNA 0.44 8 14576136 14585310
XM_026918208.2 False 1690 mRNA 0.44 8 14576136 14585427

Neighbor

gene id symbol gene type direction distance location
sytl4 sytl4 coding downstream 513 14560234 ~ 14575623 (-)
tspan7 tspan6 coding downstream 40179 14529981 ~ 14535957 (-)
mid1ip1l LOC108269374,LOC108427811,LOC107680990 coding downstream 47598 14526759 ~ 14528538 (-)
trnav-uac NA coding downstream 107511 14468553 ~ 14468625 (-)
cstf2 cstf2,LOC107688691,LOC107680996,LOC107740160 coding downstream 111537 14454809 ~ 14464599 (-)
zbtb3 zbtb3 coding upstream 6197 14591624 ~ 14594659 (-)
clint1a clint1,LOC108427862 coding upstream 14686 14600113 ~ 14621406 (-)
rnf145a rnf145,rnf145a,LOC107723822,LOC107669103,LOC107664350,LOC107740095 coding upstream 200656 14786083 ~ 14823173 (-)
il12ba NA coding upstream 255753 14841180 ~ 14854258 (-)
sh3tc2 sh3tc2 coding upstream 332569 14917996 ~ 14932160 (-)
G115143 NA non-coding downstream 35828 14540108 ~ 14540308 (-)
G115100 NA non-coding downstream 101671 14468250 ~ 14474465 (-)
G114761 NA non-coding downstream 541241 14034642 ~ 14034895 (-)
G114739 NA non-coding downstream 587326 13988570 ~ 13988810 (-)
G114729 NA non-coding downstream 600210 13975725 ~ 13975926 (-)
G115325 NA non-coding upstream 160512 14745939 ~ 14747993 (-)
G115329 NA non-coding upstream 199902 14785329 ~ 14786018 (-)
G115331 NA non-coding upstream 218027 14803454 ~ 14804191 (-)
LOC113528719 NA non-coding upstream 422284 15007711 ~ 15016373 (-)
G115477 NA non-coding upstream 547770 15133197 ~ 15133435 (-)
G114873 NA other downstream 354281 14220316 ~ 14221855 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683,LOC107593230 other downstream 660548 13841619 ~ 13915588 (-)
G114460 NA other downstream 1025361 13547512 ~ 13550775 (-)
fbxo38 fbxo38 other downstream 1548181 12934557 ~ 13027955 (-)
G114215 NA other downstream 1880627 12694771 ~ 12695509 (-)
ebf1a ebf1,ebf1a,LOC105011268 other upstream 84762 14670189 ~ 14775493 (-)
tmsb2 NA other upstream 495357 15080784 ~ 15082504 (-)
apln apln other upstream 931627 15517054 ~ 15540726 (-)
ndufa1 NA other upstream 1142223 15727650 ~ 15729388 (-)
G115842 dlg3,LOC107751999 other upstream 1265594 15851021 ~ 15852220 (-)

Expression


Co-expression Network