tmem35 (tmem35a,tmem35)


Basic Information

Item Value
gene id tmem35
gene name tmem35a,tmem35
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 14406358 ~ 14408931 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918239.2
AGCGAGGCCGCGCTGGCGTGCCGCCATGTTTGATTCTGGATAGCCCCTCCCCCTCAGCATCTTCATGAGGACAGTGAGGAGAGCGGACACACACAGCGGCTATTACACGGAGCTGGACTTTTGGCAGTCTTGACCGAATATGGCGTCGCCGAGGACAATAACCATCGTCGCTCTTTCTTTTGCACTAGGCCTCTTTTTCGTCTTCATGGGAACGATTAAACTTACACCACGGTTAAGCAAAGATGCCTACAGTGaaatgAAAAGGGCGTATAAGAGTTATGCAAAGGCTCTGCCAGGTTTGAAGAAGCTGGGCATCACCTCAGTGCTCCTGCGCAAGATCATCGGTACTGTCGAAGTGGCGTGCGGTGTGGTCCTGACACTTGTGCCTGGGAAACCGAAGGACGTTGCAAacttcctgctgctgctggtcATGCTAGCTGTGCTCTTCTTTCACCAGCTAGTTGGTGATCCTCTGAAACGCTATGCCCATGCACTGGTGTTTGGCATCCTACTCACCTGCCGCCTCCTGATCGCACGCCAGAGTGATGACCGACCTGAGAGAGAGGAACGACGAGAAGAACAGGTCAATGCTCaggaaaagaacaaaatcaaaGTTTCTTAGCTTCTCCGTTTCTGACTGTAggaaatgcaaaacaatgtggacATTTCCTGAATATCAGATGTGGCGTGACGCGTGAAAGATTGTCGCCACGAAAGGTGATATACATTCTTTATGCCCATACAAGCTGTCCAACCGTACAGTTCTTTTAGCCTTCAATTTAAAAACCTTGTCCTAAACACTCCATAAGAGTGAATAGTCAGAGTAGGATTGCCCTTGTTAACCCCTGCTGTCTTTTTAATCTTGAATTTATGTAATACTGCCCTATGTAatgctaatattattattacactacCATCAGCTTTAAGggccaattattattattattattattattattattattattattattgttattcccATAGTGAGTATTTCTGTTTCGGACACCTCATAGTATAGACACACAATGGtttcttaattaaaaatatcaattaTAAAAAATACTCTTCATTagataagagaaataaataacattttgcaaaacattttaacactGATGCATTGCAAAAGATTTAAGATTTTGTTTTCTCACAATAGGCTGTCAGACTATTTCTGAGCATGATACTCCAGTGGTTACAGACAAGCCACAAAATGATGAAACTGTATCTGTTTTATGTGTGTAAACGATTTGCTGTTTTGTGGTAgtacatgaattatttttaattattgatttttttttttttataaaagagaCAGTTTCCCTAGTGTTGCTTTCAtgtttctttcaccatacttgaTTTGGTAACTGTCACTTATAAAGGTTCAATAAAGATATCCTCACCCTTCAAA

Function

symbol description
tmem35 Predicted to be located in cytoplasmic vesicle and peroxisomal membrane. Predicted to be integral component of membrane. Orthologous to human TMEM35A (transmembrane protein 35A).
tmem35a Enables acetylcholine receptor regulator activity. Involved in chaperone-mediated protein complex assembly and positive regulation of protein localization to cell surface. Located in endoplasmic reticulum.

NR:

description
transmembrane protein 35A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918239.2 True 1411 mRNA 0.41 2 14406358 14408931

Neighbor

gene id symbol gene type direction distance location
cenpi cenpi coding downstream 7910 14383739 ~ 14398448 (-)
drp2 drp2,LOC107724836 coding downstream 22752 14247072 ~ 14383606 (-)
trnae-uuc_1 NA coding downstream 197371 14208916 ~ 14208987 (-)
elf1 elf4 coding downstream 197893 14168835 ~ 14208465 (-)
LOC113529411 hnrnpa0b,LOC108269291,LOC107593199,LOC107740138,LOC107680986,LOC107554845 coding downstream 1342926 13062338 ~ 13063432 (-)
arl13a arl13a coding upstream 7603 14416534 ~ 14423653 (-)
cstf2 cstf2,LOC107688691,LOC107680996,LOC107740160 coding upstream 45878 14454809 ~ 14464599 (-)
trnav-uac NA coding upstream 59622 14468553 ~ 14468625 (-)
mid1ip1l LOC108269374,LOC108427811,LOC107680990 coding upstream 117828 14526759 ~ 14528538 (-)
tspan7 tspan6 coding upstream 121050 14529981 ~ 14535957 (-)
G114761 NA non-coding downstream 371463 14034642 ~ 14034895 (-)
G114739 NA non-coding downstream 417548 13988570 ~ 13988810 (-)
G114729 NA non-coding downstream 430432 13975725 ~ 13975926 (-)
G114707 NA non-coding downstream 496437 13908968 ~ 13909921 (-)
G114534 NA non-coding downstream 726840 13679307 ~ 13679518 (-)
G115100 NA non-coding upstream 59319 14468250 ~ 14474465 (-)
G115143 NA non-coding upstream 131177 14540108 ~ 14540308 (-)
G115325 NA non-coding upstream 337008 14745939 ~ 14747993 (-)
G115329 NA non-coding upstream 376398 14785329 ~ 14786018 (-)
G115331 NA non-coding upstream 394523 14803454 ~ 14804191 (-)
G114873 NA other downstream 184503 14220316 ~ 14221855 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683,LOC107593230 other downstream 490770 13841619 ~ 13915588 (-)
G114460 NA other downstream 855583 13547512 ~ 13550775 (-)
fbxo38 fbxo38 other downstream 1378403 12934557 ~ 13027955 (-)
G114215 NA other downstream 1710849 12694771 ~ 12695509 (-)
ebf1a ebf1,ebf1a,LOC105011268 other upstream 261258 14670189 ~ 14775493 (-)
tmsb2 NA other upstream 671853 15080784 ~ 15082504 (-)
apln apln other upstream 1108123 15517054 ~ 15540726 (-)
ndufa1 NA other upstream 1318719 15727650 ~ 15729388 (-)
G115842 dlg3,LOC107751999 other upstream 1442090 15851021 ~ 15852220 (-)

Expression


Co-expression Network