arl13a (arl13a)


Basic Information

Item Value
gene id arl13a
gene name arl13a
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 14416534 ~ 14423653 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918315.2
AGAAGGAGGAGGAGTCAGAGCTGGCAGAGGGGCAGGATGTGGTTTGGTGGGAGGAAGTTCAGGAAAGAATAaatttttcctcctcctctacTCCCCTGAACCAGTGCACAACCAGGAGGAAGCTCCTGAAgcacggagagaacatgcaagctctgcgcACACAGGGCAGGGAATCGAGCCCCCAagcctggaggtgcgaggcaaagcaaacatgctaaccactaagcctcCATGCCTCACCCTCCCAAACagatatgtatttttttattatttggtttatttcctGAAAGAGCTCATCAGTAAGGTAGGTATTTATAGGCCAAACCTTCTATGatgtcagaaaaagaaaatgaatacacATATGATTTACACTGTTGGCATGTGCTTGCATACACAAGACACCAGATGCCAGCATTTCCAGTCAGTTTCTTCTACCTGGTTTTACACTGCCTTTATCAACAGTGCCATACCACAATATGGTAATACCCAGCTATCATATAATCCATAATTACTGGAAGTGAATTGAAAAGCATGAAACACATTTTGTCACTGAAGAATCACACATAAGTGAATCTCTATTTGGGTCAGATAAACAAACCATTACCTGCCAATAAGGAGAGCAGATGTCCCAGAAGCTCATGTGATTAGTAAGAAGAGTAAGCCTACTTGGCTCCTCCCCGATGAGGTGACAGGATTAGAGGCATAATTTGAGCCAGATTAGGATTTCTCTGCACTGTGCACAATGCCACAGGCGAGGAAAACataaacatgcaaataaataagGACATATTACTGTTTGAAACAAGAAGATGGTGCTCTCCTCCTCATCTCAATATGTTCAATTTGATGAGCAACTGCTGCAACTGGGTTTCCAAACTGCAGCAACCCATGAGGAAAGTTACTGTGATAGTGGTTGGTCTTGACAAGGTTGGAAAGACATTGTGCATCAGAGGGATGTTAAGAGCTCCCCATGGAGAAGTGAGTCCTACTCATGGATGTGTCCGCTATGAGTTAAGGTTGGAAAACTTCCTGGTGAATTTGCTGGACATGGGTGGAAGTCCTGAGTTTCGCTCATGCTGGAGAGAATACTATGGCGAGGCCCATGGAGTCATTTTTGTGGTGGATTCCAGTGATAGGCACAGAATGAAAGAGGTCAAAGAGCTTCTGACAGACATGCTGAGACAGCCTAGAGTGGCTGGAAAGCCCTTGTTAGTATTAGCCaataaacaagacaaaatgAATGCCTTACTGGGAAGTGAACTGATTGAGGTCCTGTCCCTGGAGAAGCTGGTCAATCAGAGCCGGTCTCTGTGCCACATTGAGCCATGCTCTGCCTTAATGGACCTGCGTCGATGGTCAGACAGGAAGACATTGCGAGGCCTCAGGTGGTTACTACGGGCTGTGTGCCTCGACTACCCAGATCTCTGTGCCCGTGTAGTCAGAGATGGTGGAAGGCAACCAGGActagaggagagagaaaggaaagggaaggcagaaaaaagtcagaagaaaaacaaagttgAAAGACTTAAAGCCTGTAACCCAGACATTGACCAAACACAGTGCCCTCTGGAGGAAGAACAGAAAAGTAGGAGCCATCTACAACCAATTATTCTTAAGGAGAATTCCTTTCAaaagaaactgaagaaaaagaagctaAAAGTGAAGATTAAAGCAATAACTGTGAAAAAAGGGAGCAAAAATGAAGAAGTAGATAAAGAACAGAAGGAAGACGAAGAAGCAGAAGGAAATAATGCAGAACAGGATGGCAACGGTCAAAAGGAAAAGGCCAGTCGTGACCAGGTGCCACAAAGAAGTGTGAGGCTGAAACCCAAAGCAAAAGTGGAGACTTTGGATCATCCAGAGTCCCAGGAGTCCAAACCCTCTGAAGCAGGTAATggacaaaacaagaaaaagaaaaaagtggtgAAAGGAAAGCGAAAAAACAGGATAAACACTGAAGAAATTCCTGTAAATTATAGACAGCCTGCTGACCTCTCTGCCACTTTCGATCTTTACAGAAAAGCCATTTTGGCTCTAAAAGCCCGACAGGATCAGAGTTTGATGCCAGAACAGTGAGAGGACTGGAAATGCAATGGCAGATGACACAGATCAAAGACCTGTGCAGAACATTTCATGAAGGTACTGGACCACAAAACCACCATCTTTAGGCATCTTCACCAAGACATCTATTTCCATCATCTTTTTTAGTATCTGTGAAACCCTGGATAATCTGCTTTTAACAGACTGGTGTTTTtcctctgcaaaaaaaaaattgaaaaagcattttttcaagaaccagtaatataatttgttgcTGTTATTGCTGGTTTGCATCCCAATGAGctatttaaaacacttttttttatcatcagtaATGTTGAATTGTAATCAAAATGTATGCTTTCTTCTGGTAACAACTTGTTAAATGTATGTTCACTTTTCATAATTTGgtgaaataaattattcaacTAATACTTTACATCATGTTTTGTAAAGTCCTTTGGCATAAATGACTTCTAACCTGCTAAAAATATATGCTCttttcattttaacactttattcatATTATCATACACTGGGTCATGTCATACATATGGTCATATGTAGATTAGTAGATATGGCAGAAAAACTAACAACTAAATTACAGCAACCTCCTAGTTTATTTTCAACCAATTTCAGTGAACAATTCCATTTTACAGGGTATTTTGGGCTGGTGGTTATTATGGTTTATTTACTTgatttatttagattatttatttgtatgattatttatgttttacactGATGTTAATATAGCCTATTT

Function

symbol description
arl13a Predicted to enable GTP binding activity. Predicted to be involved in non-motile cilium assembly and receptor localization to non-motile cilium. Predicted to be active in ciliary membrane and non-motile cilium. Is expressed in liver; mandibular arch skeleton; nervous system; and pronephros. Orthologous to human ARL13A (ADP ribosylation factor like GTPase 13A).

NR:

description
ADP-ribosylation factor-like protein 13B isoform X1

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918315.2 True 2806 mRNA 0.41 11 14416534 14423653

Neighbor

gene id symbol gene type direction distance location
tmem35 tmem35a,tmem35 coding downstream 7603 14406358 ~ 14408931 (-)
cenpi cenpi coding downstream 18086 14383739 ~ 14398448 (-)
drp2 drp2,LOC107724836 coding downstream 32928 14247072 ~ 14383606 (-)
trnae-uuc_1 NA coding downstream 207547 14208916 ~ 14208987 (-)
elf1 elf4 coding downstream 208069 14168835 ~ 14208465 (-)
cstf2 cstf2,LOC107688691,LOC107680996,LOC107740160 coding upstream 31156 14454809 ~ 14464599 (-)
trnav-uac NA coding upstream 44900 14468553 ~ 14468625 (-)
mid1ip1l LOC108269374,LOC108427811,LOC107680990 coding upstream 103106 14526759 ~ 14528538 (-)
tspan7 tspan6 coding upstream 106328 14529981 ~ 14535957 (-)
sytl4 sytl4 coding upstream 136581 14560234 ~ 14575623 (-)
G114761 NA non-coding downstream 381639 14034642 ~ 14034895 (-)
G114739 NA non-coding downstream 427724 13988570 ~ 13988810 (-)
G114729 NA non-coding downstream 440608 13975725 ~ 13975926 (-)
G114707 NA non-coding downstream 506613 13908968 ~ 13909921 (-)
G114534 NA non-coding downstream 737016 13679307 ~ 13679518 (-)
G115100 NA non-coding upstream 44597 14468250 ~ 14474465 (-)
G115143 NA non-coding upstream 116455 14540108 ~ 14540308 (-)
G115325 NA non-coding upstream 322286 14745939 ~ 14747993 (-)
G115329 NA non-coding upstream 361676 14785329 ~ 14786018 (-)
G115331 NA non-coding upstream 379801 14803454 ~ 14804191 (-)
G114873 NA other downstream 194679 14220316 ~ 14221855 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683,LOC107593230 other downstream 500946 13841619 ~ 13915588 (-)
G114460 NA other downstream 865759 13547512 ~ 13550775 (-)
fbxo38 fbxo38 other downstream 1388579 12934557 ~ 13027955 (-)
G114215 NA other downstream 1721025 12694771 ~ 12695509 (-)
ebf1a ebf1,ebf1a,LOC105011268 other upstream 246536 14670189 ~ 14775493 (-)
tmsb2 NA other upstream 657131 15080784 ~ 15082504 (-)
apln apln other upstream 1093401 15517054 ~ 15540726 (-)
ndufa1 NA other upstream 1303997 15727650 ~ 15729388 (-)
G115842 dlg3,LOC107751999 other upstream 1427368 15851021 ~ 15852220 (-)

Expression


Co-expression Network