tspan7 (tspan6)


Basic Information

Item Value
gene id tspan7
gene name tspan6
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 14529981 ~ 14535957 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918483.2
GTGGCCCTTCTGAAGTGTGTGCACTCTCCTCACTTCACCCCGGAGGTAGAGCCTCAGTTGCTGCTACGACATTTCCTTCCCACTCGCctcgacaaaaaaaaaaacttttccagaGGAACAATCCCAGTTTTCCTCCCCCTCCTAACATCAAACAAGCCAAATCGGCAACACGACCAGACCTGAAACCCGAAATGTCTCCTCCGTCTAGAAGATTGCAGACCAAACCCGTGATAACATGTCTGAAGACCTTTCTGATTTCTTACAGCCTTATCTTTTGGTTCACAGGGGTGATCCTGTTAGCAGTGGGAGTCTGGGGGAAGGTTAGTCTGGAGTCCTATCTCTTGCTAGCCTCAGACATGAGCACCAATGCACCATATGTCCTTATTGGCACTGGTGCAATCATCGTCATCTTTGGCCTCTTTGGTTGCTTCGCCACCTGCCGTGGTAGTCCATGGATGCTGAAACTGTATGCTATGTTCCTGACTCTAGTATTCTTGGCTGAACTTGTGGCAGGCATTTCTGGCTTCGTTTTCAGACATgagATCAAAGCAGTCCTTAAAGATGTATACTGGAATGCTGAAAGAAAGTACAATACTACAGATGGCAGAAACCAAGCAGTGGATTCCATGCAGACATCTCTGAAGTGCTGTGGTCTGTACAACTACACTAGCTGGGGACAGACAGAGTACTTCAAGCAGCATGGCATACCGATAAGCTGCTGTATGCCACTGGCTAATTGTACCACTGAAAATCTCAAAGATCTGAACCTGGCTCGAACAGTGGTATACCAGCAGGGCTGCTTCTCTCTGGTGACAACTGCGATGGAGTCTAATTTGGGAATCATCGCTGGGATATCTTTTGGAATAGCATTCTTCCAGCTTATTGGTGTATTCCTGGCATGCTGCTTGTCACGCTACATCACCAACAACCAGTATGAAATGGTCTAGGCATTTCAGGGTGGAAACATGAGGTCATCTATGATATACGACACAAAGGGAAGCCATATAGTTTTAGAATTGTTTCTCATTTTAGAAAATCCTCCAGCtacccttttctttttttaagtgttaGTCCATGGCAACTAGATCGAAGGGAGGGATTTAATTTGCTATATAGGGGATCATGTCTTTTCACAGTTATTCATCTTGATGCAGTTATGTGCCTTTTGTAGTTTGTTAATGGAAATTATGGAAAAGATTCACAGAAAGTAGAGTTGGTGCAGGTTTTTGCCAGTGTTAAACTTGTGAAATCAATGGTATATACATTTACTGACTTGCCTTTGGTAGTTGGTCTTAATATTATTCCTTTTTCAGTTTAATAACTTGCAAGTTCCTAGgtcaaaataaattattttgagTAGAGGGAAACAAACTGGGGTTACGTTGATATGAGGTGGCATTGTATATTCAAGCCTTATTTCATGTAATATTGCCTTACCAAACAAATGTTGAACTGCAGATCCTTCTTTATGGGCCAACATTTCATATGAATATGGTTCACTGACATTAAGACAGTGATGTATCTTAATAAGAGTCAGTGTATTGTAAGTATATGTATTGCTTTTGTTCATTGAGTGGCtttattataatactgtatttaGTTAATGCACATTCCCTGCAACACAACAGCTGAGGGCACATCTGCCCTGATAGTGTGCTTACTTCGAAGTATTtccagttttctgtttttctttttttgtgaaacacTGGCATTTCCAAGTTCGCTGGAGTGACACATAACCTGATTATTGCATTTCATTGTCTTGTATGTCTAAGTTAACATTTTAAAGCATGTAGTATCTGTACTCTGTACATTCTGTCAATGATAATTCAGTGTTAATAGCTTGCTTTGAGTTGTGTGAACAGCATGTATTATACATCAAAAAGAATAAACAAGCTTAAGTTA

Function

symbol description
tspan6 Involved in negative regulation of NIK/NF-kappaB signaling and negative regulation of viral-induced cytoplasmic pattern recognition receptor signaling pathway. Located in extracellular exosome.

NR:

description
tetraspanin-7-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918483.2 True 1905 mRNA 0.41 8 14529981 14535957

Neighbor

gene id symbol gene type direction distance location
mid1ip1l LOC108269374,LOC108427811,LOC107680990 coding downstream 1443 14526759 ~ 14528538 (-)
trnav-uac NA coding downstream 61356 14468553 ~ 14468625 (-)
cstf2 cstf2,LOC107688691,LOC107680996,LOC107740160 coding downstream 65382 14454809 ~ 14464599 (-)
arl13a arl13a coding downstream 106328 14416534 ~ 14423653 (-)
tmem35 tmem35a,tmem35 coding downstream 121050 14406358 ~ 14408931 (-)
sytl4 sytl4 coding upstream 24277 14560234 ~ 14575623 (-)
trmt12 trmt12 coding upstream 40179 14576136 ~ 14585427 (-)
zbtb3 zbtb3 coding upstream 55667 14591624 ~ 14594659 (-)
clint1a clint1,LOC108427862 coding upstream 64156 14600113 ~ 14621406 (-)
rnf145a rnf145,rnf145a,LOC107723822,LOC107669103,LOC107664350,LOC107740095 coding upstream 250126 14786083 ~ 14823173 (-)
G115100 NA non-coding downstream 55516 14468250 ~ 14474465 (-)
G114761 NA non-coding downstream 495086 14034642 ~ 14034895 (-)
G114739 NA non-coding downstream 541171 13988570 ~ 13988810 (-)
G114729 NA non-coding downstream 554055 13975725 ~ 13975926 (-)
G114707 NA non-coding downstream 620060 13908968 ~ 13909921 (-)
G115143 NA non-coding upstream 4151 14540108 ~ 14540308 (-)
G115325 NA non-coding upstream 209982 14745939 ~ 14747993 (-)
G115329 NA non-coding upstream 249372 14785329 ~ 14786018 (-)
G115331 NA non-coding upstream 267497 14803454 ~ 14804191 (-)
LOC113528719 NA non-coding upstream 471754 15007711 ~ 15016373 (-)
G114873 NA other downstream 308126 14220316 ~ 14221855 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683,LOC107593230 other downstream 614393 13841619 ~ 13915588 (-)
G114460 NA other downstream 979206 13547512 ~ 13550775 (-)
fbxo38 fbxo38 other downstream 1502026 12934557 ~ 13027955 (-)
G114215 NA other downstream 1834472 12694771 ~ 12695509 (-)
ebf1a ebf1,ebf1a,LOC105011268 other upstream 134232 14670189 ~ 14775493 (-)
tmsb2 NA other upstream 544827 15080784 ~ 15082504 (-)
apln apln other upstream 981097 15517054 ~ 15540726 (-)
ndufa1 NA other upstream 1191693 15727650 ~ 15729388 (-)
G115842 dlg3,LOC107751999 other upstream 1315064 15851021 ~ 15852220 (-)

Expression


Co-expression Network