zbtb3 (zbtb3)


Basic Information

Item Value
gene id zbtb3
gene name zbtb3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 14591624 ~ 14594659 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918508.2
GACACAGTGCACTACGTATGGTGTAAAAAGCCATTATCTTACGCCATATCTAATGCACCTACGTAGGGACATCAGGGCCATTAGGGATTCAGCCGAAGAATAACAGCTACGTTAGCAGCGTAGTGGTTCTTCGTACGGTTCGGATCTTAATAGAAAACCTCGCTCTTTTCTCgcagctgtttttattttatttcgaCAACAAATTCTGTTTTCTTGCAGTTATTTATGCAGTTAAAAGAAATGGTATGAAATTATGTTGGCAGTATTCTCTTATTGTATACAGGTAATGTGGTTATGCCATTGTTTTAGTTACTAGCTAAATGAGTTTTCTTGTTGTATTGTTAGCtaaggttagctagctaggacCCAAACTGTTTTGTTGTCACAGCATAATTAGCTAAGCTTCAGCTATTTCCCTTGCATTTTGGCAACCTGTGAGCTGTTAACAGATATATTCTGTTTGaAGTAGTGATGAAGTGATTGTCTCCTTTTCTGTGaagattgttttaaaaatggcttGACTATCTTCAGATCATACAGTCTGATGATGTTTGTAGTCTGAGGGTTTTGTATACAGCGGAAACATTGCTGTAACTTCATTTACACCTAGTTGTTCATCTGAGCTTGCCATGGAGTTCCCAGGTCATAGTCAGCAGCTCTTGGCCAGTCTGCGCTCTCAGCGTCTCCAGGGATTCCTGTGTGACTGCACAGTCAGAGTTGGTCCCACTCGTTTTCTGGCTCACCGTGCCGTACTGGCCTCCTGCTCACCGTTCTTCCACATGTTCTACTCTGAACACCCAGTAGGCAGCACGTCTACAGTAAACGGAGGACCAGAGACAGACACCGTCACCATTAATGGAGATATAGTGACCCCTCCAGCGTTCGGGTTGCTCCTCGATTTCATGTATGAGGGAGTGCTGAAGTTGGCAGCACACCCGCCTCCGGAAGACGTTCTCGCTGCGGCCAGTTTCTTGCACATGAACGACGTGGTGCGAGTCTGTAAGAAAAGACTACAGGGTCGTGGACTGGCTGAGGCCGACAGCACCAGGGCAGAAGACGGAGCAAGTGAAACTGGGGGAGATGGAACGATGTTTAGTGGGTCGTCTAGGGAAGGAAAGTCAAATGGCCGAAGGGAAACGGTGGAAGGTGGTGGACAAGGAGCTGTCAGGGTTTCAGCATCAAATCCAGCCTCGTCTCCCTCAATAACACAGTGTCCCCAGCCAAGCCAGCAGTCGGCATTTCATATTGACACTAAAGCAGAGACAAATGTGGGAGTACCTAATTGCATCACACATAGCATTAATCTGGGAAGTCCAGACATGGCGGACACTACTCAACCAGGCATGGACTCTCTTTCAGCAGTAAATGATTCTGGACCAGGATTGTACAGTTCTTCTCCTGGACCTGCTAGAGCTGGGATGTCAGCAGCTGCTAATATGGAGTCTACACTTTCAAGTCCTTGCAGCACCACAGAACCAGTTCAGACAGGAACAGAAACTCAGCCCAGTGCATCCACTGTTATGGTTCTGGTTCCTGTGGAACACAGCCGAAATAGAGACTCCAGTCAAGAAACATCCGTATCAAGAGAAATAAGCAATGTGTTTACGGTTGCCGCTACTCATCCTGGTCAAACCAAAAAACCCACGTCGATTCAACACAACGGACAGAGTATAAGCAACGAAGTGAGACACGCTGCCAGAGGTTTAAATGAACCGCCACGGTCACGGTCCTGTTCTCCCACAGCATTGTCTTCAGCAGGTAGAGAAGATGGTAGTGAAGAGACAGCAAAAGTGAAGGTGGAGGCCATTGTAATCTCCGATGAAGAGACAGAAGACATGGAGGAGATACCTGTTAGGGTCAGAGAGCGAAGGAGAGATGTTGATTTAGAAGAAAGGGAGAATTATGAGGGGACTAATGATGTTGAGATCACTAATGCTCACTTCATACCTTCTCACTCATTAATGCAACTCTCACATAATCACCAAGAGCCAAtctctttccctttttcacCACAGGGTCCTGGTGCTTCCTCTTCTGACACGCCCAGCTTCCCCTCTACCCTTTTTACAGCAGCTTCCCAGCAACCAGACCAGCAGACTATCTACTTTGAGGAATATCACGATTCTCTTGGGAATTATGTAGAGGATGTGCCTACATGTGCCACTTGTGGAAAGACATTTTCTTGTGCTTATACACTGAGGAGGCACGCCATAGTGCACACACGGGAGCGTCCTTATGAATGTCGTTACTGTTACCGGAGTTACACGCAGTCTGGGGACTTGTACAGGCACATAAGGAAGGCTCATGATCACGATTTGCCAATGAAGCGTAGCAGAACAGAATCTGACCCTCCCCCATCCCCACCCCTTCCTCAGCCACCTCAGACATAACAAGATACTCTGCCCAGTATGACTGAGCATGTATCAAAGCTATTGCAAAGGCTAAAATCGTAcacctgttttttgtttgtttgtttgttttttgttttttttaacaggttgTGTGAACCAACTTTGCAAAGGACTGTTACTATTAACCTTTGGTGTCAGAAAGTAAGCATTCAACATTGAACTTAACCTGTCACTGGATAACATTgtgaccaaaaacaaaacattccaTTCAGGACATCCGTCACTGTCCTTTTACATTATAATCCTAATCATTGTCTAGTTTCTCACCTTAGATATAAACAGAAtgagcttttttaaaatacaaatcttcTTCTACAAATCTTCTGACaatattggaacagcaaggccaattctttttgtttttgctatacactgaggACTTTTGGgttttcagctttcatttcctgatatttatatctagatgtgttaaacaactt
>XM_026918509.2
GACACAGTGCACTACGTATGGTGTAAAAAGCCATTATCTTACGCCATATCTAATGCACCTACGTAGGGACATCAGGGCCATTAGGGATTCAGCCGAAGAATAACAGCTACGTTAGCAGCGTAGTGGTTCTTCGTACGGTTCGGATCTTAATAGAAAACCTCGCTCTTTTCTCgcagctgtttttattttatttcgaCAACAAATTCTGTTTTCTTGCAGTTATTTATGCAGTTAAAAGAAATGGTATGAAATTATGTTGGCAGTATTCTCTTATTGTATACAGGTAATGTGGTTATGCCATTGTTTTAGTTACTAGCTAAATGAGTTTTCTTGTTGTATTGTTAGCtaaggttagctagctaggacCCAAACTGTTTTGTTGTCACAGCATAATTAGCTAAGCTTCAGCTATTTCCCTTGCATTTTGGCAACCTGTGAGCTGTTAACAGATATATTCTGTTTGTAGTGATGAAGTGATTGTCTCCTTTTCTGTGaagattgttttaaaaatggcttGACTATCTTCAGATCATACAGTCTGATGATGTTTGTAGTCTGAGGGTTTTGTATACAGCGGAAACATTGCTGTAACTTCATTTACACCTAGTTGTTCATCTGAGCTTGCCATGGAGTTCCCAGGTCATAGTCAGCAGCTCTTGGCCAGTCTGCGCTCTCAGCGTCTCCAGGGATTCCTGTGTGACTGCACAGTCAGAGTTGGTCCCACTCGTTTTCTGGCTCACCGTGCCGTACTGGCCTCCTGCTCACCGTTCTTCCACATGTTCTACTCTGAACACCCAGTAGGCAGCACGTCTACAGTAAACGGAGGACCAGAGACAGACACCGTCACCATTAATGGAGATATAGTGACCCCTCCAGCGTTCGGGTTGCTCCTCGATTTCATGTATGAGGGAGTGCTGAAGTTGGCAGCACACCCGCCTCCGGAAGACGTTCTCGCTGCGGCCAGTTTCTTGCACATGAACGACGTGGTGCGAGTCTGTAAGAAAAGACTACAGGGTCGTGGACTGGCTGAGGCCGACAGCACCAGGGCAGAAGACGGAGCAAGTGAAACTGGGGGAGATGGAACGATGTTTAGTGGGTCGTCTAGGGAAGGAAAGTCAAATGGCCGAAGGGAAACGGTGGAAGGTGGTGGACAAGGAGCTGTCAGGGTTTCAGCATCAAATCCAGCCTCGTCTCCCTCAATAACACAGTGTCCCCAGCCAAGCCAGCAGTCGGCATTTCATATTGACACTAAAGCAGAGACAAATGTGGGAGTACCTAATTGCATCACACATAGCATTAATCTGGGAAGTCCAGACATGGCGGACACTACTCAACCAGGCATGGACTCTCTTTCAGCAGTAAATGATTCTGGACCAGGATTGTACAGTTCTTCTCCTGGACCTGCTAGAGCTGGGATGTCAGCAGCTGCTAATATGGAGTCTACACTTTCAAGTCCTTGCAGCACCACAGAACCAGTTCAGACAGGAACAGAAACTCAGCCCAGTGCATCCACTGTTATGGTTCTGGTTCCTGTGGAACACAGCCGAAATAGAGACTCCAGTCAAGAAACATCCGTATCAAGAGAAATAAGCAATGTGTTTACGGTTGCCGCTACTCATCCTGGTCAAACCAAAAAACCCACGTCGATTCAACACAACGGACAGAGTATAAGCAACGAAGTGAGACACGCTGCCAGAGGTTTAAATGAACCGCCACGGTCACGGTCCTGTTCTCCCACAGCATTGTCTTCAGCAGGTAGAGAAGATGGTAGTGAAGAGACAGCAAAAGTGAAGGTGGAGGCCATTGTAATCTCCGATGAAGAGACAGAAGACATGGAGGAGATACCTGTTAGGGTCAGAGAGCGAAGGAGAGATGTTGATTTAGAAGAAAGGGAGAATTATGAGGGGACTAATGATGTTGAGATCACTAATGCTCACTTCATACCTTCTCACTCATTAATGCAACTCTCACATAATCACCAAGAGCCAAtctctttccctttttcacCACAGGGTCCTGGTGCTTCCTCTTCTGACACGCCCAGCTTCCCCTCTACCCTTTTTACAGCAGCTTCCCAGCAACCAGACCAGCAGACTATCTACTTTGAGGAATATCACGATTCTCTTGGGAATTATGTAGAGGATGTGCCTACATGTGCCACTTGTGGAAAGACATTTTCTTGTGCTTATACACTGAGGAGGCACGCCATAGTGCACACACGGGAGCGTCCTTATGAATGTCGTTACTGTTACCGGAGTTACACGCAGTCTGGGGACTTGTACAGGCACATAAGGAAGGCTCATGATCACGATTTGCCAATGAAGCGTAGCAGAACAGAATCTGACCCTCCCCCATCCCCACCCCTTCCTCAGCCACCTCAGACATAACAAGATACTCTGCCCAGTATGACTGAGCATGTATCAAAGCTATTGCAAAGGCTAAAATCGTAcacctgttttttgtttgtttgtttgttttttgttttttttaacaggttgTGTGAACCAACTTTGCAAAGGACTGTTACTATTAACCTTTGGTGTCAGAAAGTAAGCATTCAACATTGAACTTAACCTGTCACTGGATAACATTgtgaccaaaaacaaaacattccaTTCAGGACATCCGTCACTGTCCTTTTACATTATAATCCTAATCATTGTCTAGTTTCTCACCTTAGATATAAACAGAAtgagcttttttaaaatacaaatcttcTTCTACAAATCTTCTGACaatattggaacagcaaggccaattctttttgtttttgctatacactgaggACTTTTGGgttttcagctttcatttcctgatatttatatctagatgtgttaaacaactt

Function

symbol description
zbtb3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZBTB3 (zinc finger and BTB domain containing 3).

NR:

description
PREDICTED: zinc finger and BTB domain-containing protein 42-like

GO: NA

KEGG:

id description
K10490 ZBTB3; zinc finger and BTB domain-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918508.2 True 2848 mRNA 0.45 3 14591624 14594659
XM_026918509.2 False 2845 mRNA 0.45 3 14591624 14594659

Neighbor

gene id symbol gene type direction distance location
trmt12 trmt12 coding downstream 6197 14576136 ~ 14585427 (-)
sytl4 sytl4 coding downstream 16001 14560234 ~ 14575623 (-)
tspan7 tspan6 coding downstream 55667 14529981 ~ 14535957 (-)
mid1ip1l LOC108269374,LOC108427811,LOC107680990 coding downstream 63086 14526759 ~ 14528538 (-)
trnav-uac NA coding downstream 122999 14468553 ~ 14468625 (-)
clint1a clint1,LOC108427862 coding upstream 5454 14600113 ~ 14621406 (-)
rnf145a rnf145,rnf145a,LOC107723822,LOC107669103,LOC107664350,LOC107740095 coding upstream 191424 14786083 ~ 14823173 (-)
il12ba NA coding upstream 246521 14841180 ~ 14854258 (-)
sh3tc2 sh3tc2 coding upstream 323337 14917996 ~ 14932160 (-)
pttg1 LOC108268450 coding upstream 444944 15039603 ~ 15042499 (-)
G115143 NA non-coding downstream 51316 14540108 ~ 14540308 (-)
G115100 NA non-coding downstream 117159 14468250 ~ 14474465 (-)
G114761 NA non-coding downstream 556729 14034642 ~ 14034895 (-)
G114739 NA non-coding downstream 602814 13988570 ~ 13988810 (-)
G114729 NA non-coding downstream 615698 13975725 ~ 13975926 (-)
G115325 NA non-coding upstream 151280 14745939 ~ 14747993 (-)
G115329 NA non-coding upstream 190670 14785329 ~ 14786018 (-)
G115331 NA non-coding upstream 208795 14803454 ~ 14804191 (-)
LOC113528719 NA non-coding upstream 413052 15007711 ~ 15016373 (-)
G115477 NA non-coding upstream 538538 15133197 ~ 15133435 (-)
G114873 NA other downstream 369769 14220316 ~ 14221855 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683,LOC107593230 other downstream 676036 13841619 ~ 13915588 (-)
G114460 NA other downstream 1040849 13547512 ~ 13550775 (-)
fbxo38 fbxo38 other downstream 1563669 12934557 ~ 13027955 (-)
G114215 NA other downstream 1896115 12694771 ~ 12695509 (-)
ebf1a ebf1,ebf1a,LOC105011268 other upstream 75530 14670189 ~ 14775493 (-)
tmsb2 NA other upstream 486125 15080784 ~ 15082504 (-)
apln apln other upstream 922395 15517054 ~ 15540726 (-)
ndufa1 NA other upstream 1132991 15727650 ~ 15729388 (-)
G115842 dlg3,LOC107751999 other upstream 1256362 15851021 ~ 15852220 (-)

Expression


Co-expression Network