si:ch211-153b23.4 (si:ch211-153b23.4,LOC108269373,LOC108440096,LOC107570153,LOC107663089,LOC107573953,LOC107661545,LOC107746322)


Basic Information

Item Value
gene id si:ch211-153b23.4
gene name si:ch211-153b23.4,LOC108269373,LOC108440096,LOC107570153,LOC107663089,LOC107573953,LOC107661545,LOC107746322
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 9587335 ~ 9593325 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940386.2
GCAACGATGGCAGAGTCTGCGTCCGACTCCGAGTCACTGCATTACTCCATCGGTATTTTGGGCATATCTGGTGgctCTTTGCTGCTTCTCGTGGACTACTATGCCAGCACTCCTGAAAAGGCCTTAATTCCTGCTACAGCACTGGGGGTTGTGCTGCTCGTTATCGCTGCCCTGGTGGCCTATGCAGGATTGTGTCGGAGTTTGTCCCACAACGTTCTCTATACCACACTTTGTCTGACCGTGTCAGCTCTGTGGTGTGGCTCAGGGCTTGTTCATATACTCGCAGGGGAAGGTATAATCAGTGAAGGAAATGGGCTGAGAAATGCCATGGTACCAGGGCTTGCTGCTTTTACTTTGGCATTGCTTATCATTAGTTTAGTGTCTGTTCTACATAAAAGCTTCTTCCTGTGCTTTATTTCCCTCTCCATATGTTTGGCATGTGCACATGAAATCGCTGGTCTGGTGAAAGTAAACTTTGGCCAGTCAGCCACTGCTGCCTGTTACCTCTTGGTCTGTTTTGTCTGTGCCTACTTTGGCAGCGGGCGTCTGTTTTTCTACATCTCACAGGGTAAGATTAATCTACCAGGGACAGGTCTGCTGAATAAAAACAGTCAGCAGTCAGCACAGGCTCAAGAACAAAACAATGTAATTGCTGTGGGTTTGGTAATGAACTTGTTGTCAGCTAGTGTGCTAGCTTGTCCACTGCTTGGTGTGGTCCCTGAGCTTTTCTCTGGCCATGTCCCATGGCTTTGGACAGCTGGTGTCTTCCAGCTAGGTGTGACTGTCCTCTCCTACAGAACCATGGACACCTTGGCAGCAACCTTCTATGGCTTCACAGCTATATTAAAGTTTTCTGAAGGGTATAGTGCGCTAGTGATGGACTTAACAAACCAAGTGCCATATTCCCCAGTACCTTTCCCCACTGTTTTTGCAGTGCTCTTTTTTGTCCTGGCTTTGTTTAGCTGCACCAGAAGTTTAGTTGACGGCCTGTACCTGCTCTTCTTCGTGGCTTACTCTATAGCAATCGCTGCACAACCCAGAGGCTTTTTCCAGGGGGGCACACAAGGTGTGCAAGCAGCTATATTTGTCGCATCTGCCCTCATGCTTCTGGTAACTCTGTATAACCAAGTTTCTCAAAAGAAGATTCCCACAGGTGAAAGTGTCCTCAAGAATCTTCTGGCTCGCAGCAATAAATTTACACTACGGACACAGGACAAAAACCTGCATGATCCCTATTTAGGTTACTCCAAATATGCAGATGCTGAGGTGTTGGGCCATGGTTGTAGTGTGCTGGCAGCTTTTGCCATCACTGCTAGTGTGGCTAATCAGGACCCCTTGGCAGTTCTGATTTTGCCATGGGCTGTTGTCTCAGGTGGTGTCCTGCAGTTGCTTTGTGGCTCAGTTGCTTTTGCTCGAGGTAAGACCCTAGAAAGCACCACCTTCATATTCTATGGCATCATGTGGACAGTGTGGGGCCTGACACGTTTTGGTGGTCTCTATGGTGATGTCCGTGGGTTCAACATAGCAGTGGGAATTATCAGCTTCATGGTTTTTAATATACTTGTGGCTGTTGGAACCCTGTTCCTGAATATAGCATGGTTTGTCTATGCAGTTACCTTTGAGCTCATTCTCATTAGTTTCCTGTTAGATGCATTGGGAGTGCTGCCCTATGGTTATGACATTGGTGTGACCATTATCTTTGGTCTGGTTAGCTTCTACTTTTTCTTGGCCAATATACTGAACTGCACCTTTGAGAGTCTGCAGCTTCCCTTTGGTGGTCCTCTGATCAAGTGGAAAGGATTTGGTGGAGGCAGGGACAGCTGTCCACACCTTCCTGCCAGGAAGGTCTCATCAGTGAAGCAGATTGCAGacaTCATGAAGAATGGAGGAATATGCGGAGTGCCCACCGACACGGTCTATGTGCTTGTGGCAGCTTGCAATCGACCGGATGCAGTTGAGAAAGCTTATAAGGTGAAGAAACAGGCACAAGAGCGTCCAATGTCATTATGGCTCTCTTCCTTGAAACAGTTAGAACCAGTCAAACAACAGATCAATCCACTTCTCTGGGACTTCATGGAGGTGGCTTGGCCATCATCAATTAGCCTGGTCATTCCTAGAGCCCCTTGGATGGAATACTTTGGTTTACATGATTCATCAAAATATATTGGCACACCGCAAAGCATAGCCATCAGAAACCCAGATTGCACTGTTGTAAACCACCTAATTAGCTTGGTGGGCCCTATTGCTGTTACTTCAGCAAATCCGACAGGTGAAGCAGACACAACCCATCATAACCAGGTGTATGCTAAGCTGGGTGACAAGGTTGATGGTGTGTTATGTGATGGGCCTTCACCAGAGAATATTGCCTCCACTGTCGTGGACTGCACCAAGATCGACAGTGGTCAAATTGGCTTTTTCAGAGTCGGCCTTATTCCTAAGTCTAAgGTCCTGCAGCTATTCGAGGAAATTCAGAAAAGACATCAGAATGGCCACTTGAATGTTGGCTTTGAGGCTGACATCACTGATACTCAAAGTGACAGCACAGAACCAACAACTCAAACAGGTTCTGAAATAGATTCGGGTTTAAGTCAGCCAACCCCCGCAGACTCGTTGAGTTCACTAGACCTCAGCCAACACGGCAACatggatgatgaagatgaatcATAGAGCTGGACTCTGTGTATTGACAGCTTTCAATATGTAAACAATAAACCTGTAAATATCACATTCCATATTGTACAATTATAGCAAAAGGTaacaaaatgacaataaaaaaaaccacccaCTGAAATGATACAATA
>XR_003404336.2
GCAACGATGGCAGAGTCTGCGTCCGACTCCGAGTCACTGCATTACTCCATCGGTATTTTGGGCATATCTGGTGgctCTTTGCTGCTTCTCGTGGACTACTATGCCAGCACTCCTGAAAAGGCCTTAATTCCTGCTACAGCACTGGGGGTTGTGCTGCTCGTTATCGCTGCCCTGGTGGCCTATGCAGGATTGTGTCGGAGTTTGTCCCACAACGTTCTCTATACCACACTTTGTCTGACCGTGTCAGCTCTGTGGTGTGGCTCAGGGCTTGTTCATATACTCGCAGGGGAAGGTATAATCAGTGAAGGAAATGGGCTGAGAAATGCCATGGTACCAGGGCTTGCTGCTTTTACTTTGGCATTGCTTATCATTAGTTTAGTGTCTGTTCTACATAAAAGCTTCTTCCTGTGCTTTATTTCCCTCTCCATATGTTTGGCATGTGCACATGAAATCGCTGGTCTGGTGAAAGTAAACTTTGGCCAGTCAGCCACTGCTGCCTGTTACCTCTTGGTCTGTTTTGTCTGTGCCTACTTTGGCAGCGGGCGTCTGTTTTTCTACATCTCACAGGGTAAGATTAATCTACCAGGGACAGGTCTGCTGAATAAAAACAGTCAGCAGTCAGCACAGGCTCAAGAACAAAACAATGTAATTGCTGTGGGTTTGGTAATGAACTTGTTGTCAGCTAGTGTGCTAGCTTGTCCACTGCTTGGTGTGGTCCCTGAGCTTTTCTCTGGCCATGTCCCATGGCTTTGGACAGCTGGTGTCTTCCAGCTAGGTGTGACTGTCCTCTCCTACAGAACCATGGACACCTTGGCAGCAACCTTCTATGGCTTCACAGCTATATTAAAGTTTTCTGAAGGGTATAGTGCGCTAGTGATGGACTTAACAAACCAAGTGCCATATTCCCCAGTACCTTTCCCCACTGTTTTTGCAGTGCTCTTTTTTGTCCTGGCTTTGTTTAGCTGCACCAGAAGTTTAGTTGACGGCCTGTACCTGCTCTTCTTCGTGGCTTACTCTATAGCAATCGCTGCACAACCCAGAGGCTTTTTCCAGGGGGGCACACAAGGTGTGCAAGCAGCTATATTTGTCGCATCTGCCCTCATGCTTCTGGTAACTCTGTATAACCAAGTTTCTCAAAAGAAGATTCCCACAGGTGAAAGTGTCCTCAAGAATCTTCTGGCTCGCAGCAATAAATTTACACTACGGACACAGGACAAAAACCTGCATGATCCCTATTTAGGTTACTCCAAATATGCAGATGCTGAGGTGTTGGGCCATGGTTGTAGTGTGCTGGCAGCTTTTGCCATCACTGCTAGTGTGGCTAATCAGGACCCCTTGGCAGTTCTGATTTTGCCATGGGCTGTTGTCTCAGGTGGTGTCCTGCAGTTGCTTTGTGGCTCAGTTGCTTTTGCTCGAGGTAAGACCCTAGAAAGCACCACCTTCATATTCTATGGCATCATGTGGACAGTGTGGGGCCTGACACGTTTTGGTGGTCTCTATGGTGATGTCCGTGGGTTCAACATAGCAGTGGGAATTATCAGCTTCATGGTTTTTAATATACTTGTGGCTGTTGGAACCCTGTTCCTGAATATAGCATGGTTTGTCTATGCAGTTACCTTTGAGCTCATTCTCATTAGTTTCCTGTTAGATGCATTGGGAGTGCTGCCCTATGGTTATGACATTGGTGTGACCATTATCTTTGGTCTGGTTAGCTTCTACTTTTTCTTGGCCAATATACTGAACTGCACCTTTGAGAGTCTGCAGCTTCCCTTTGGTGGTCCTCTGATCAAGTGGAAAGGATTTGGTGGAGGCAGGGACAGCTGTCCACACCTTCCTGCCAGGAAGGTCTCATCAGTGAAGCAGATTGCAGacaTCATGAAGAATGGAGGAATATGCGGAGTGCCCACCGACACGGTCTATGTGCTTGTGGCAGCTTGCAATCGACCGGATGCAGTTGAGAAAGCTTATAAGGTGAAGAAACAGGCACAAGAGCGTCCAATGTCATTATGGCTCTCTTCCTTGAAACAGTTAGAACCAGTCAAACAACAGATCAATCCACTTCTCTGGGACTTCATGGAGGTGGCTTGGCCATCATCAATTAGCCTGGTCATTCCTAGAGCCCTTGGATGGAATACTTTGGTTTACATGATTCATCAAAATATATTGGCACACCGCAAAGCATAGCCATCAGAAACCCAGATTGCACTGTTGTAAACCACCTAATTAGCTTGGTGGGCCCTATTGCTGTTACTTCAGCAAATCCGACAGGTGAAGCAGACACAACCCATCATAACCAGGTGTATGCTAAGCTGGGTGACAAGGTTGATGGTGTGTTATGTGATGGGCCTTCACCAGAGAATATTGCCTCCACTGTCGTGGACTGCACCAAGATCG

Function

symbol description
si:ch211-153b23.4 Predicted to enable nucleotidyltransferase activity and tRNA binding activity. Predicted to be involved in regulation of translational fidelity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm.

NR:

description
uncharacterized protein LOC110494843

GO: NA

KEGG:

id description
K07566 tsaC, rimN, SUA5; L-threonylcarbamoyladenylate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940386.2 True 2801 mRNA 0.46 9 9587335 9593325
XR_003404336.2 False 2394 misc_RNA 0.47 8 9587828 9593325

Neighbor

gene id symbol gene type direction distance location
irg1l irg1l,LOC108269388,LOC108440101,LOC107570155,LOC107746176,LOC107573956,LOC107663091,LOC107661550,LOC107746319 coding downstream 11988 9570114 ~ 9575347 (-)
LOC113542799 uprt,LOC108440089 coding downstream 163221 9410848 ~ 9424114 (-)
thoc2 thoc2,LOC107733416,LOC107741598 coding downstream 386200 9121034 ~ 9201135 (-)
nlgn3a nlgn3,nlgn3a,LOC107748936,LOC107689138,LOC107663109 coding downstream 782604 8649464 ~ 8804731 (-)
pcdh20 LOC108268391 coding downstream 957286 8624773 ~ 8630049 (-)
zgc:174917 LOC108268429,LOC108440103 coding upstream 5462 9598787 ~ 9601926 (-)
si:ch211-153b23.7 LOC108269411 coding upstream 11300 9604625 ~ 9615161 (-)
znf711 znf711,LOC107684921,LOC107569605,LOC107746145 coding upstream 312633 9905958 ~ 9917165 (-)
zgc:66447 LOC108268886 coding upstream 325048 9918373 ~ 9946526 (-)
prps1b prps1,prps1b,LOC108413289,LOC103391169,LOC107746314,LOC107684920,LOC104923196 coding upstream 387809 9981134 ~ 9992732 (-)
G112144 NA non-coding downstream 33657 9553026 ~ 9553678 (-)
G112141 NA non-coding downstream 36283 9550812 ~ 9551052 (-)
LOC113542930 NA non-coding downstream 100266 9481256 ~ 9487069 (-)
G112026 NA non-coding downstream 186756 9400354 ~ 9400579 (-)
G111939 NA non-coding downstream 249009 9337874 ~ 9338326 (-)
G112161 NA non-coding upstream 112612 9705937 ~ 9706232 (-)
G112454 NA non-coding upstream 371382 9964707 ~ 9965338 (-)
G112459 NA non-coding upstream 377052 9970377 ~ 9970649 (-)
G112473 NA non-coding upstream 409454 10002779 ~ 10002992 (-)
G112569 NA non-coding upstream 630619 10223944 ~ 10224651 (-)
fgf16 fgf16 other downstream 239401 9340373 ~ 9347934 (-)
LOC113542918 NA other downstream 1221753 8362373 ~ 8365582 (-)
LOC113542919 NA other downstream 1229389 8356254 ~ 8357946 (-)
canx canx,LOC107733432,LOC107667459 other downstream 1648861 7911338 ~ 7938474 (-)
G110290 NA other downstream 3758777 5826230 ~ 5828558 (-)
tmsb1 NA other upstream 366251 9959576 ~ 9964000 (-)
LOC113542827 slc25a53 other upstream 372460 9965785 ~ 9973795 (-)
LOC113542749 LOC108269078 other upstream 1665126 11258451 ~ 11325468 (-)
G113398 NA other upstream 1765813 11359138 ~ 11359579 (-)
G113516 NA other upstream 2018648 11611973 ~ 11612569 (-)

Expression


Co-expression Network