si:ch211-153b23.7 (LOC108269411)


Basic Information

Item Value
gene id si:ch211-153b23.7
gene name LOC108269411
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 9604625 ~ 9615161 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940387.2
CATATCAACAAAACAGTGTCTTTTCATTTCAGGGTGTTAGACCATCACCGCATATTAGTAATAGATCTATAGAAATATAATCATAGTTAGGATATTTTCTCATCAAACTTTTTATTATCAAGGTCTGGAACACAACATTTAGTAGTTGTACTTcctttttgtaatgttttgcaTTTAAGTGTAGGGGCTTTATATTTAGACTTCCTGCTTAAGTGCCGAGTGgtttcagaaatatatatatatatttctgtttggTTGTTTCTGTATTGACATAAGTTTTAATTATCAGAATAAGACATTGTATCATGGATGGAAGCTCATTATCATCACTTTCAGAGGAGGAATCTTCAAAACAGCATTCTCTTCCTAAAGAGACCAAGGAAGAAAGAACGTCGCTCTGCTCAGGACAAGTGGAGGATTTGACCCAAACAGACAGACTCATCTCTGGAGAGGAGCAGTTAACATTAATCACAGAAAGCATGTCCATCACGTCTGCAGACCAGGAGAAACTTCAGCTCCTTAACAAGAACACAGAGCTTCGCAGGCTCAACAAAGAGCTTATGAAGCTAAATGAGGACTGGGACCACATCTACCGCAGCACAAGTGCAGGCCTGCAGCAACGGGTGGCGGCTCTGGAGCAAGAAATTTCGGCCCTCAAGCAACTCAACAGCAGACTCTTGATCAAAGTTGAACATGAACAGaatAAAAGTGAGTattatgaacacacactgatgcaagAGCTAAAGAAAAATCAACATCTTCAAGAGTACATCCGCCTCCTGGAGAGCCGTCTTCACCACACTGATACCCTGAAAGACTGGGCTTTAGGGACCCAGAACATGACAGCTGTTATCAGCCCACCAGAGGCACATATCCTGGAGCGAAGTCCCAAATCCTCCACTTCCACTGCTCCATCTTTGGAGCTCCAGCACAGGACTAGGTCCAGCCGAGCACATTCTGAGAGCCATGAGAAGCAGAATGATGCCATTAAGGAAGTTCAGGACCTTAAAGAGCAGCTGGAAGCCTTGAGGTGCCAGaCTAAAATCTATGAAGCAGACTATAAAATAGAGCACAAGGACCATGAACGCATGCTCCAAGAGAACAAGAGGCTCCGGCGTCGTGAGGGAGAGATGCGGCAGCAGATGGCGCTGTTGCAAGAACAGCTGAAGGTGTATGAGGATGACTTCCAGAAGGAGCGCTCGGATAAGCAGCTACTGCAGCGGCTTCTGATGAAGAAAGCTCCAGTGGGGCAGGAGCCAGCACTAATCCACCGCTGTAATAATGACCAGGAGAGAccaagaggagagaggagaagaataagagaggagaacagagcaGCTTTCATGTGTCCAAAACACTGTGAGAACCGTGGGCACCTGGAGTACCCCTGAGATACACACTGGTCCAGCTCTAAATGTGATTGTATCTAAGGCTGCATGCTAAAactgttactatttttataaTTGGTATTATGTATTTATCAGAGTCTTTAGCTTTTTTATTGGGcataaactcacacacatactcatgcACATATATTCACAGGTTCAGCAGAGAAGTATTGTGATTGTATCTAAAGTTACAGTACACACTTATAataacattttgagaaatgatATTTAGAGTtagaaatttatttatgaagCTTTATATTTAGTTTTGAATGACCTTTCCTAAAATTTTGACTTTTCTTAAAATTAAGACTTTTTCTTAAAATGCTTACATTTTcaatttctcctttttctttctcataaGAGAAATGCTATTGAATAAATGCCAGTTtttataaatagatagatagatagatagatagatagatagatattcaAGAGtgtaattgtattatttttttacttgccATATAATGCAATCCTGCTTATAACAATATACTAATAGGGGTGTTGCAACATACAAGTGCTGCAGTATGTACCATTATGAGAAAACCTGTGATTACATGATtacaccattttattttatactgctTTAAATGTGGTGCATTTGTTGCTATACATGCTACATGCTTTTCAAAATAAGAACTTCTTTTTTGAACAAACA

Function

NR:

description
uncharacterized protein LOC110489139

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940387.2 True 2055 mRNA 0.40 7 9604625 9615161

Neighbor

gene id symbol gene type direction distance location
zgc:174917 LOC108268429,LOC108440103 coding downstream 2699 9598787 ~ 9601926 (-)
irg1l irg1l,LOC108269388,LOC108440101,LOC107570155,LOC107746176,LOC107573956,LOC107663091,LOC107661550,LOC107746319 coding downstream 29278 9570114 ~ 9575347 (-)
LOC113542799 uprt,LOC108440089 coding downstream 180511 9410848 ~ 9424114 (-)
thoc2 thoc2,LOC107733416,LOC107741598 coding downstream 403490 9121034 ~ 9201135 (-)
nlgn3a nlgn3,nlgn3a,LOC107748936,LOC107689138,LOC107663109 coding downstream 799894 8649464 ~ 8804731 (-)
znf711 znf711,LOC107684921,LOC107569605,LOC107746145 coding upstream 290797 9905958 ~ 9917165 (-)
zgc:66447 LOC108268886 coding upstream 303212 9918373 ~ 9946526 (-)
prps1b prps1,prps1b,LOC108413289,LOC103391169,LOC107746314,LOC107684920,LOC104923196 coding upstream 365973 9981134 ~ 9992732 (-)
rhogd rhog,LOC108269394,LOC108443105,LOC103045046,LOC107573550,LOC104923191 coding upstream 457010 10072171 ~ 10075615 (-)
sybl1 vamp7 coding upstream 478635 10093796 ~ 10105232 (-)
G112144 NA non-coding downstream 50947 9553026 ~ 9553678 (-)
G112141 NA non-coding downstream 53573 9550812 ~ 9551052 (-)
LOC113542930 NA non-coding downstream 117556 9481256 ~ 9487069 (-)
G112026 NA non-coding downstream 204046 9400354 ~ 9400579 (-)
G111939 NA non-coding downstream 266299 9337874 ~ 9338326 (-)
G112161 NA non-coding upstream 90776 9705937 ~ 9706232 (-)
G112454 NA non-coding upstream 349546 9964707 ~ 9965338 (-)
G112459 NA non-coding upstream 355216 9970377 ~ 9970649 (-)
G112473 NA non-coding upstream 387618 10002779 ~ 10002992 (-)
G112569 NA non-coding upstream 608783 10223944 ~ 10224651 (-)
si:ch211-153b23.4 si:ch211-153b23.4,LOC108269373,LOC108440096,LOC107570153,LOC107663089,LOC107573953,LOC107661545,LOC107746322 other downstream 11300 9587335 ~ 9593325 (-)
fgf16 fgf16 other downstream 256691 9340373 ~ 9347934 (-)
LOC113542918 NA other downstream 1239043 8362373 ~ 8365582 (-)
LOC113542919 NA other downstream 1246679 8356254 ~ 8357946 (-)
canx canx,LOC107733432,LOC107667459 other downstream 1666151 7911338 ~ 7938474 (-)
tmsb1 NA other upstream 344415 9959576 ~ 9964000 (-)
LOC113542827 slc25a53 other upstream 350624 9965785 ~ 9973795 (-)
LOC113542749 LOC108269078 other upstream 1643290 11258451 ~ 11325468 (-)
G113398 NA other upstream 1743977 11359138 ~ 11359579 (-)
G113516 NA other upstream 1996812 11611973 ~ 11612569 (-)

Expression


Co-expression Network