spdl1 (spdl1)


Basic Information

Item Value
gene id spdl1
gene name spdl1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 12581456 ~ 12662949 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940454.2
CAGTCTTATGTCCACAGGTCTTTGTATCCAAATCGCCAGATCAAAGACTCATATACGGTCTTCCGATGTCAACAACGCTGTTTGAAACTCCCGCGCAACCACCTTCCGGCCTGCTCCCAAACAGCAACCTCTAGCCCTAAGCCTCTTTCCTCATGTACAGAATCTGTTGCCGGGGAAAACACATAATAGCAGCGCGTTTTTAATTTTGGCTGCTAAATACTAGTAGGCCATTATTGCACTACCCAGGCTCCAGTCCAGTAGGTGGCGGTAATACACCTTTCTCTTGGATGTCATACACCTCATTTCAAAGACGAATTGTTCAAAAACGATTTGGCGCTGAACGACAGATTATGGAGAACGAGATTCAAAGATTACAACAGAAAGTGGAAGAGGCTGAAGAAGCCCTTCAGAAGGCAGCACAGTATGGACTTCAGCTCCTGGATGACAAAATGGATCTGCAAAATAAGTTGGAAGATCAGCGAATTGAGATGACTGCTCTAATTGagGGCTTGGAGCAAGAAAAATATTCACTGCAGAGAGAAGTGGAGCTAAAGTGCCGCATGCTGGTCAGCCTTAATTCAGAATTTGATGATGTTAAAAACCAGCAGAAACATCTGTTGGAACAGCAGCAAACAATGTTGGAGAGGAATCATGCAGTGGAATGCAGTGAACTCAAGAACAAGGTGAACAAAATGAAAGGGGATCTAGAAAAGGCTCAGCTTCTTGAGAAACAGCTGAGACATAAATTGGAGTTGCAGTCTCAAACTTTAACCAACAAAACTGAGGAGCTTCGCAAAATATCCGAACGTGCCCATGAAACTATGTCTTCAGAGATCTTGGAGCTACAAATCCAGAAGATGGACTTGGAATCATCTATgGCTGCCTTAGAACAGAAGCATCAGGAATTGGTATACAGAGAACAGCAGCTGGAGCTGGCTAATTGTATCCTTCAGAGGCAACTAGAGACACTTGCAAAtacaaaggaagaaaaagaaaaagaggtcGTGTCACTCTACAGTGCTTTGGAGAAATCCAGGGAAGCCAACCAGGACCTTCAAATACAATTGGACGAGGTGTTGCAGCATGCACAGGATCCAAACAGCAAAGGCAATTCATTATTCTCTGAGGTAGAGGACAAGCGTgcagaaatagagagacagttgaTCAGTGTAAAAGTACAGTACCAGTCTCTTCAAAAGCAGCATGCTTTTACCAAACAGCAGATGCTTCGCATGAAGGTGCAGATATCTAATGTGATGCAGCTTCAGGGCATTAGAGCTGACCCAGCCCAGCTTGAGCGATTACAGTTCATGTTGTCAGAGAAGAACAGTGAGATAGAAACCTTAATGAAGAAAGTGCAACAGTTGGAGAAAGTGGAGGTGGCACTTGAGAATCAGTCCACTGCTGTCTCCAAGGAAACCGAGGTTGTGGATGAGACATACTACACTGATCTTTTGAAAATGCAACTCTCAAATTCAAAgAAAGTTGCCGAGAAACTGAAGGAGGAATTATCAATGGCAAGAATGAAAGCTCTTTCTGAGAGTCACAGGGTGCTCGAGTTGGAAAGGAAACTCTTTGCGGCAGAGAATACTCTAAAGCACGGGCGCATTGACATTATCAGGCTCCAAGTGAAAACTGAAGAACTCCAGATGAAATATGAGCCTAATgAGGCGAAAAAGGCACAGGCTCAGAAGTGCAAGCGAGAGAAATTTCCAGTAAACTTACCTGATGAGTCTGACCACAGCAGCATGGATACTCCAGGCATGAAGACTGAGCCAAGCAGGAACAAGGCTATAGATGGAAAAGCCCTCCCTTGTTCAACTGAGAACGAATTTTCGACCCCAGTACAGTTATCACAAGCCCCAAGCTCTGTCTTGCTTTGTGACACCAAATGTGTTCGCGTCTGTGAGAATGCTTCAATTTCTATTCCTGATCCCCCAAGGTCTTCAGTGAAAGTCTGCGTAAGCACAGCCAAGGACAAAATGGTAAAATGGGATGACGAGGGAGACAACTGGAGACCCGAAAGGTACAAGAAGTATCAAGCACCTGTTCATGTTGATTCAGAGAACACCATGGAAAAACAGTGTGCTCAACAGTAGTAATTACTCTCTACTAAAAAAAGTCTCTATTATATATAGATGTTaattttgctaaaatgtttaGATGTTTAACTCTTATTGGACAATAAATGTTAATAGTCACT
>XM_026940455.2
CAGTCTTATGTCCACAGGTCTTTGTATCCAAATCGCCAGATCAAAGACTCATATACGGTCTTCCGATGTCAACAACGCTGTTTGAAACTCCCGCGCAACCACCTTCCGGCCTGCTCCCAAACAGCAACCTCTAGCCCTAAGCCTCTTTCCTCATGTACAGAATCTGTTGCCGGGGAAAACACATAATAGCAGCGCGTTTTTAATTTTGGCTGCTAAATACTAGTAGGCCATTATTGCACTACCCAGGCTCCAGTCCAGTAGGTGGCGGTAATACACCTTTCTCTTGGATGTCATACACCTCATTTCAAAGACGAATTGTTCAAAAACGATTTGGCGCTGAACGACAGATTATGGCATGTGCCCCTGGCCTGTGGACCACCATGAATTTTAGTGGATGAAGTGCCCAATATCAACAAGTGATCCGAGTGTTGGCATCCATGCAAAGGAGCCACTGGAGCAGATGTGATCGGAACAGGATAAAGGGGCCCACTAATAGGTAGATTCCAAGGAGAACGAGATTCAAAGATTACAACAGAAAGTGGAAGAGGCTGAAGAAGCCCTTCAGAAGGCAGCACAGTATGGACTTCAGCTCCTGGATGACAAAATGGATCTGCAAAATAAGTTGGAAGATCAGCGAATTGAGATGACTGCTCTAATTGagGGCTTGGAGCAAGAAAAATATTCACTGCAGAGAGAAGTGGAGCTAAAGTGCCGCATGCTGGTCAGCCTTAATTCAGAATTTGATGATGTTAAAAACCAGCAGAAACATCTGTTGGAACAGCAGCAAACAATGTTGGAGAGGAATCATGCAGTGGAATGCAGTGAACTCAAGAACAAGGTGAACAAAATGAAAGGGGATCTAGAAAAGGCTCAGCTTCTTGAGAAACAGCTGAGACATAAATTGGAGTTGCAGTCTCAAACTTTAACCAACAAAACTGAGGAGCTTCGCAAAATATCCGAACGTGCCCATGAAACTATGTCTTCAGAGATCTTGGAGCTACAAATCCAGAAGATGGACTTGGAATCATCTATgGCTGCCTTAGAACAGAAGCATCAGGAATTGGTATACAGAGAACAGCAGCTGGAGCTGGCTAATTGTATCCTTCAGAGGCAACTAGAGACACTTGCAAAtacaaaggaagaaaaagaaaaagaggtcGTGTCACTCTACAGTGCTTTGGAGAAATCCAGGGAAGCCAACCAGGACCTTCAAATACAATTGGACGAGGTGTTGCAGCATGCACAGGATCCAAACAGCAAAGGCAATTCATTATTCTCTGAGGTAGAGGACAAGCGTgcagaaatagagagacagttgaTCAGTGTAAAAGTACAGTACCAGTCTCTTCAAAAGCAGCATGCTTTTACCAAACAGCAGATGCTTCGCATGAAGGTGCAGATATCTAATGTGATGCAGCTTCAGGGCATTAGAGCTGACCCAGCCCAGCTTGAGCGATTACAGTTCATGTTGTCAGAGAAGAACAGTGAGATAGAAACCTTAATGAAGAAAGTGCAACAGTTGGAGAAAGTGGAGGTGGCACTTGAGAATCAGTCCACTGCTGTCTCCAAGGAAACCGAGGTTGTGGATGAGACATACTACACTGATCTTTTGAAAATGCAACTCTCAAATTCAAAgAAAGTTGCCGAGAAACTGAAGGAGGAATTATCAATGGCAAGAATGAAAGCTCTTTCTGAGAGTCACAGGGTGCTCGAGTTGGAAAGGAAACTCTTTGCGGCAGAGAATACTCTAAAGCACGGGCGCATTGACATTATCAGGCTCCAAGTGAAAACTGAAGAACTCCAGATGAAATATGAGCCTAATgAGGCGAAAAAGGCACAGGCTCAGAAGTGCAAGCGAGAGAAATTTCCAGTAAACTTACCTGATGAGTCTGACCACAGCAGCATGGATACTCCAGGCATGAAGACTGAGCCAAGCAGGAACAAGGCTATAGATGGAAAAGCCCTCCCTTGTTCAACTGAGAACGAATTTTCGACCCCAGTACAGTTATCACAAGCCCCAAGCTCTGTCTTGCTTTGTGACACCAAATGTGTTCGCGTCTGTGAGAATGCTTCAATTTCTATTCCTGATCCCCCAAGGTCTTCAGTGAAAGTCTGCGTAAGCACAGCCAAGGACAAAATGGTAAAATGGGATGACGAGGGAGACAACTGGAGACCCGAAAGGTACAAGAAGTATCAAGCACCTGTTCATGTTGATTCAGAGAACACCATGGAAAAACAGTGTGCTCAACAGTAGTAATTACTCTCTACTAAAAAAAGTCTCTATTATATATAGATGTTaattttgctaaaatgtttaGATGTTTAACTCTTATTGGACAATAAATGTTAATAGTCACT
>XM_026940457.2
AGTCAGTCTTATGTCCACAGGTCTTTGTATCCAAATCGCCAGATCAAAGACTCATATACGGTCTTCCGATGTCAACAACGCTGTTTGAAACTCCCGCGCAACCACCTTCCGGCCTGCTCCCAAACAGCAACCTCTAGCCCTAAGCCTCTTTCCTCATGTACAGAATCTGTTGCCGGGGAAAACACATAATAGCAGCGCGTTTTTAATTTTGGCTGCTAAATACTAGTAGGCCATTATTGCACTACCCAGGCTCCAGTCCAGTAGGTGGCGGTAATACACCTTTCTCTTGGATGTCATACACCTCATTTCAAAGACGAATTGTTCAAAAACGATTTGGCGCTGAACGACAGATTATGGAGAACGAGATTCAAAGATTACAACAGAAAGTGGAAGAGGCTGAAGAAGCCCTTCAGAAGGCAGCACAGTATGGACTTCAGCTCCTGGATGACAAAATGGATCTGCAAAATAAGTTGGAAGATCAGCGAATTGAGATGACTGCTCTAATTGagGTGAACAAAATGAAAGGGGATCTAGAAAAGGCTCAGCTTCTTGAGAAACAGCTGAGACATAAATTGGAGTTGCAGTCTCAAACTTTAACCAACAAAACTGAGGAGCTTCGCAAAATATCCGAACGTGCCCATGAAACTATGTCTTCAGAGATCTTGGAGCTACAAATCCAGAAGATGGACTTGGAATCATCTATgGCTGCCTTAGAACAGAAGCATCAGGAATTGGTATACAGAGAACAGCAGCTGGAGCTGGCTAATTGTATCCTTCAGAGGCAACTAGAGACACTTGCAAAtacaaaggaagaaaaagaaaaagaggtcGTGTCACTCTACAGTGCTTTGGAGAAATCCAGGGAAGCCAACCAGGACCTTCAAATACAATTGGACGAGGTGTTGCAGCATGCACAGGATCCAAACAGCAAAGGCAATTCATTATTCTCTGAGGTAGAGGACAAGCGTgcagaaatagagagacagttgaTCAGTGTAAAAGTACAGTACCAGTCTCTTCAAAAGCAGCATGCTTTTACCAAACAGCAGATGCTTCGCATGAAGGTGCAGATATCTAATGTGATGCAGCTTCAGGGCATTAGAGCTGACCCAGCCCAGCTTGAGCGATTACAGTTCATGTTGTCAGAGAAGAACAGTGAGATAGAAACCTTAATGAAGAAAGTGCAACAGTTGGAGAAAGTGGAGGTGGCACTTGAGAATCAGTCCACTGCTGTCTCCAAGGAAACCGAGGTTGTGGATGAGACATACTACACTGATCTTTTGAAAATGCAACTCTCAAATTCAAAgAAAGTTGCCGAGAAACTGAAGGAGGAATTATCAATGGCAAGAATGAAAGCTCTTTCTGAGAGTCACAGGGTGCTCGAGTTGGAAAGGAAACTCTTTGCGGCAGAGAATACTCTAAAGCACGGGCGCATTGACATTATCAGGCTCCAAGTGAAAACTGAAGAACTCCAGATGAAATATGAGCCTAATgAGGCGAAAAAGGCACAGGCTCAGAAGTGCAAGCGAGAGAAATTTCCAGTAAACTTACCTGATGAGTCTGACCACAGCAGCATGGATACTCCAGGCATGAAGACTGAGCCAAGCAGGAACAAGGCTATAGATGGAAAAGCCCTCCCTTGTTCAACTGAGAACGAATTTTCGACCCCAGTACAGTTATCACAAGCCCCAAGCTCTGTCTTGCTTTGTGACACCAAATGTGTTCGCGTCTGTGAGAATGCTTCAATTTCTATTCCTGATCCCCCAAGGTCTTCAGTGAAAGTCTGCGTAAGCACAGCCAAGGACAAAATGGTAAAATGGGATGACGAGGGAGACAACTGGAGACCCGAAAGGTACAAGAAGTATCAAGCACCTGTTCATGTTGATTCAGAGAACACCATGGAAAAACAGTGTGCTCAACAGTAGTAATTACTCTCTACTAAAAAAAGTCTCTATTATATATAGATGTTaattttgctaaaatgtttaGATGTTTAACTCTTATTGGACAATAAATGTTAATAGTCACTA
>XM_034305918.1
TCAGTCTTATGTCCACAGGTCTTTGTATCCAAATCGCCAGATCAAAGACTCATATACGGTCTTCCGATGTCAACAACGCTGTTTGAAACTCCCGCGCAACCACCTTCCGGCCTGCTCCCAAACAGCAACCTCTAGCCCTAAGCCTCTTTCCTCATGTACAGAATCTGTTGCCGGGGAAAACACATAATAGCAGCGCGTTTTTAATTTTGGCTGCTAAATACTAGTAGGCCATTATTGCACTACCCAGGCTCCAGTCCAGTAGGTGGCGGTAATACACCTTTCTCTTGGATGTCATACACCTCATTTCAAAGACGAATTGTTCAAAAACGATTTGGCGCTGAACGACAGATTATGGGGCTTGGAGCAAGAAAAATATTCACTGCAGAGAGAAGTGGAGCTAAAGTGCCGCATGCTGGTCAGCCTTAATTCAGAATTTGATGATGTTAAAAACCAGCAGAAACATCTGTTGGAACAGCAGCAAACAATGTTGGAGAGGAATCATGCAGTGGAATGCAGTGAACTCAAGAACAAGGTGAACAAAATGAAAGGGGATCTAGAAAAGGCTCAGCTTCTTGAGAAACAGCTGAGACATAAATTGGAGTTGCAGTCTCAAACTTTAACCAACAAAACTGAGGAGCTTCGCAAAATATCCGAACGTGCCCATGAAACTATGTCTTCAGAGATCTTGGAGCTACAAATCCAGAAGATGGACTTGGAATCATCTATgGCTGCCTTAGAACAGAAGCATCAGGAATTGGTATACAGAGAACAGCAGCTGGAGCTGGCTAATTGTATCCTTCAGAGGCAACTAGAGACACTTGCAAAtacaaaggaagaaaaagaaaaagaggtcGTGTCACTCTACAGTGCTTTGGAGAAATCCAGGGAAGCCAACCAGGACCTTCAAATACAATTGGACGAGGTGTTGCAGCATGCACAGGATCCAAACAGCAAAGGCAATTCATTATTCTCTGAGGTAGAGGACAAGCGTgcagaaatagagagacagttgaTCAGTGTAAAAGTACAGTACCAGTCTCTTCAAAAGCAGCATGCTTTTACCAAACAGCAGATGCTTCGCATGAAGGTGCAGATATCTAATGTGATGCAGCTTCAGGGCATTAGAGCTGACCCAGCCCAGCTTGAGCGATTACAGTTCATGTTGTCAGAGAAGAACAGTGAGATAGAAACCTTAATGAAGAAAGTGCAACAGTTGGAGAAAGTGGAGGTGGCACTTGAGAATCAGTCCACTGCTGTCTCCAAGGAAACCGAGGTTGTGGATGAGACATACTACACTGATCTTTTGAAAATGCAACTCTCAAATTCAAAgAAAGTTGCCGAGAAACTGAAGGAGGAATTATCAATGGCAAGAATGAAAGCTCTTTCTGAGAGTCACAGGGTGCTCGAGTTGGAAAGGAAACTCTTTGCGGCAGAGAATACTCTAAAGCACGGGCGCATTGACATTATCAGGCTCCAAGTGAAAACTGAAGAACTCCAGATGAAATATGAGCCTAATgAGGCGAAAAAGGCACAGGCTCAGAAGTGCAAGCGAGAGAAATTTCCAGTAAACTTACCTGATGAGTCTGACCACAGCAGCATGGATACTCCAGGCATGAAGACTGAGCCAAGCAGGAACAAGGCTATAGATGGAAAAGCCCTCCCTTGTTCAACTGAGAACGAATTTTCGACCCCAGTACAGTTATCACAAGCCCCAAGCTCTGTCTTGCTTTGTGACACCAAATGTGTTCGCGTCTGTGAGAATGCTTCAATTTCTATTCCTGATCCCCCAAGGTCTTCAGTGAAAGTCTGCGTAAGCACAGCCAAGGACAAAATGGTAAAATGGGATGACGAGGGAGACAACTGGAGACCCGAAAGGTACAAGAAGTATCAAGCACCTGTTCATGTTGATTCAGAGAACACCATGGAAAAACAGTGTGCTCAACAGTAGTAATTACTCTCTACTAAAAAAAGTCTCTATTATATATAGATGTTaattttgctaaaatgtttaGATGTTTAACTCTTATTGGACAATAAATGTTAATAGTCACT

Function

symbol description
spdl1 Predicted to enable kinetochore binding activity. Predicted to be involved in establishment of mitotic spindle orientation; mitotic metaphase plate congression; and protein localization to kinetochore. Predicted to act upstream of or within cell division and mitotic spindle assembly checkpoint signaling. Predicted to be located in nucleus. Predicted to be part of outer kinetochore. Predicted to be active in spindle pole. Is expressed in brain. Orthologous to human SPDL1 (spindle apparatus coiled-coil protein 1).

NR:

description
PREDICTED: protein Spindly-like, partial

GO:

id name namespace
GO:0034501 protein localization to kinetochore biological_process
GO:0000132 establishment of mitotic spindle orientation biological_process
GO:0007080 mitotic metaphase plate congression biological_process
GO:0000922 spindle pole cellular_component
GO:0000940 condensed chromosome outer kinetochore cellular_component
GO:0005634 nucleus cellular_component
GO:0043515 kinetochore binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940454.2 False 2203 mRNA 0.43 12 12581457 12662946
XM_026940455.2 True 2358 mRNA 0.44 13 12581457 12662946
XM_026940457.2 False 2030 mRNA 0.43 11 12581456 12662949
XM_034305918.1 False 2052 mRNA 0.43 11 12581457 12662947

Neighbor

gene id symbol gene type direction distance location
atoh8 atoh8,LOC107677004,LOC107753212,LOC107571829 coding downstream 32163 12527491 ~ 12549293 (-)
btk btk,LOC107554824 coding downstream 88657 12437839 ~ 12492799 (-)
LOC117597734 NA coding downstream 271293 12298166 ~ 12310163 (-)
hdac3 hdac3 coding downstream 518319 12025781 ~ 12063137 (-)
LOC113542750 LOC108268434,LOC108436714 coding downstream 1037732 11481891 ~ 11543724 (-)
hspa9 hspa9,LOC106604950 coding upstream 198701 12861650 ~ 12904853 (-)
LOC113529411 hnrnpa0b,LOC108269291,LOC107593199,LOC107740138,LOC107680986,LOC107554845 coding upstream 399389 13062338 ~ 13063432 (-)
elf1 elf4 coding upstream 1505886 14168835 ~ 14208465 (-)
trnae-uuc_1 NA coding upstream 1545967 14208916 ~ 14208987 (-)
drp2 drp2,LOC107724836 coding upstream 1584123 14247072 ~ 14383606 (-)
G114169 NA non-coding downstream 16488 12564748 ~ 12564968 (-)
G114103 NA non-coding downstream 58784 12518655 ~ 12522672 (-)
G114096 NA non-coding downstream 66834 12512829 ~ 12514622 (-)
G114095 NA non-coding downstream 69103 12509870 ~ 12512353 (-)
LOC117597691 NA non-coding downstream 77486 12501180 ~ 12503970 (-)
G114183 NA non-coding upstream 1805 12664754 ~ 12665071 (-)
LOC117597685 LOC107701872 non-coding upstream 14019 12676968 ~ 12691407 (-)
G114216 NA non-coding upstream 32904 12695853 ~ 12696081 (-)
G114226 NA non-coding upstream 81523 12744472 ~ 12744681 (-)
G114227 NA non-coding upstream 81867 12744816 ~ 12745035 (-)
G114097 NA other downstream 63262 12516358 ~ 12518194 (-)
timm8a timm8a,LOC107742474,LOC107680336,LOC107593201 other downstream 76646 12500940 ~ 12504810 (-)
G114013 NA other downstream 157399 12423728 ~ 12424057 (-)
G113959 csnk1a1,LOC106604944 other downstream 212513 12321331 ~ 12368943 (-)
LOC113542864 LOC108427892,LOC108268827,LOC107740141,LOC107593202,LOC106612226,LOC107554835 other downstream 406551 12169629 ~ 12174905 (-)
G114215 NA other upstream 31822 12694771 ~ 12695509 (-)
fbxo38 fbxo38 other upstream 271608 12934557 ~ 13027955 (-)
G114460 NA other upstream 884563 13547512 ~ 13550775 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683,LOC107593230 other upstream 1178670 13841619 ~ 13915588 (-)
G114873 NA other upstream 1557367 14220316 ~ 14221855 (-)

Expression


Co-expression Network