cysltr1 (cysltr1)


Basic Information

Item Value
gene id cysltr1
gene name cysltr1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 10225121 ~ 10233471 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940480.2
GTTCACTGTGCCAGGACTCCGCGCGCAGACTAGACTTTGTTATATGCGCGCGCGTAATGCAGCAGGCTGTGTAAGGCAGAGATCATTACCGCGCGCTCATCTGTCCCTCAGCGCCTTTAATCAGACGCGATCAGACCCAAGCCTCGCTTCTTCCACACCGAGCAAGAAGCCCTTCTGATCAGCTGGTACAGCCACCCCACGGAACACCTGGATAAGCGAGTCAACGATTCAACATCTTGGaacCCAGAAAATGGCAAACAACACCACCGAGTTCTCCTGCCCCTCAATTGATGACTTCCGTAACCAGGTCTATTCCACTGCCTACTCCATCATCACCATTTTTGGCCTGGTGGGTAATGGCTTTGCCCTGGTGGTGCTCATCCGGACCTACCGCCAGTCCTCTGCCTTCCATGTGTACATGCTGAACCTGGCAGTGgcggacctgctgtgtgtgtgcacactgcCTTTCCGCGTTCTCTACTATGTGCAAAAGGGCCACTGGATACTTGGTGACTTCCTGTGCCGCATCAGCTCGTATGCGCTCTATGTCAACCTCTACTGCAGCATTTTCTTCATGATGGCCATGAGCTTTACACGTTTCCTGGCCATCGTCTTCCCTGTGCAGAATCTGCGCATGGCCACTGAGCGGCGGGCGCGAGTGGTCTGCGCCTGCATTTGGGTCTTCATCTGTTCCACCAGCTCACCGTTCCTGCTCTCCGGCCAGCACACTGACCCGAAGACCAACAAAACCAAATGCTTTGAGCCACCGGAGGAATCGGGCAGCCTAAAGAAGCTGGTGGTGCTCAATTACTTCTCACTGGTGGTGGGTTTCATTGTGCCCTTTTTAGTGATCCTGGTTTGCTATGTTGGCATTGTGCGGGCACTGCTGGGCAACTCCAATGCAATGAAGAAGCAGCAGAACACGCGCACCAAGGCCATCCGTATGATCATAGTTGTCATGCTGGCCTTCTTGGTCAGCTTCATGCCCTACCACGTGCAGCGCACCGTGCACCTCCACTTTAAAAAGCAAGGGGCCTCATGTGATGAGATCAATTACATGCAGAAGTCGGTGGTGATCACGCTGTGCCTGGCTGCTGCCAACTCCTGCTTCGACCCCATGCTTTACTTCTTTTCGGGTGAGAACTTCCGTCACAGACTCTCCACTTTCCGCAAGGCATCACTGAATTCCCTGAACATGAAGCGCAACCGCAATTTGCCATCGTCTTCCCGTCCATTACAGCAGAGCGACCTGGAGAAATGTAATAGCTCAAGCAATCTTGGGTAATCCTAAAGATGACAGTGCCTCCTGGCTAAACGAACGAGCAAGCAGTGAGCAAGCATGATGTCgttggattttgtttgatttcatagaaaattaattcataaaaaatggCATTCACCTTGCCATTAAGCTTAAACCTAATCTTAACCTTTGAAGTGAATTCAGTTGTGCAAACTGGTGCCTCAAGGAATTAAAAAGAAGCGACTGTTGCTCATTGTGGAAACTCAGGTTCAACCTGAAGGACCTGAAGGTAGGGTAATCATTGAAGAAAGCTCAGTATTATTATGGTCCAAGAAGTGGAAATGAAGCTTACctgttttattgcacttttctttttctggatattaattagcaaagaaaaaaatccagaaaacgAAAAGAAGATAAAGGCTTACACAGATTCTATATTAACTTACTATAAATGGACTCACAGAACAGTAGCCTGCTTACAAAATAATGTGTATACTGTATTAATGATGCTGCTTTAAATCTGTAAGGCAATGACGGATTACCACTGACAGATTGTTGGGCcaatctgcttttttttattattattatatgttcaTATTAATACTGATTAGCATAATGTGCTTATATTTTGTAATGTACCTATTGTATGTTAATAATTGCAAATGttaatgtattgtgtatgtACAGTGCAAATGCAGCAAggcatatttatatacaaaagACAACTTTTTTATACCATGCAAAcagactcattcacacctagggtcaaATCAGAGTTGCCACCCACCTACTGTGTTATTTGGAACATGGGTACTGTAGGACATGCCAAACTCTGCACAgagagtaacccgagctcaggatgtACCCAGACGCTAGAGCTATGAAGGACCAATTTGTTAATTGCGCTGTTATGGcgaaccatttctgttgtaagatatattCTAAAGCTTGGGaaagggaaagggggattatggagtggatactGTCTGTACTAGGCGATGACAAAAAAAGGCATACTGCAGTTATTTATTGCAAATTGTACCATTTTGTGCACCACAGTGTacttgtttcccatgcaaagactgggaagatgggaaaaaaaagtccagtGCCATTTTTGGGCTTGTTTCAGTCtttcagttttagttttttgtgatgtagttgagctggaacatttttttttgagacCTGGCAACTCTGTCCACAAAGTTAAATTACTACAGTGGACAGCCATTTATGTGTCACCCTTCAGTTCTGATAGTATTACAGTATTCTAGCGACATCTAGTGGCTGAAATGGCAACTGCATAAGAAGatacatttgtacatttggTAACATAATACAAGAACAACAGACTGCTAGTACTAGTGTGCCATtaatacatgtttttctttaatatatgCACTAAAATTCAGTTGAACAGTATAGTATGTCATATTGGCTATCTATTAAGCGTTACTGATAGTAATTAGTCTATTATAATGTCGTAGCTTTAATCAACTAAAAGTAATATAGCATGAAGGCGTACCGACTATCATGTAAATTTTTGTTAATTGAAGATAgcatatttaagatttttaataAGGTACATAAATGATTACTTTTCACACTGCAGAAGATAGCTAAATGGGTTTGCATTATGCAATTTTTCGGTTGATTTGTAAAGACGGACAAATAAAACCCAAACTAAAAGTGCAGACCCCCCCCCCATCATTATTCTAACAATGGAGTGATTCATTTTCTTGTGCTTTCTCCAGCCTCAAAACTACTTACTGAACTCTTATAACCCACATGTCCATAATTAACACTCAGACTGAATCAACACAAACAATAAAGACGGCAAGCTGTCGCAGAGTATAGTACTACTGTAGATACTGTAGATACACTTCAAGTCACGTGAACGACTGCTACCATCCCAACACTCCGAAATAAGTAACTGTGCAATGTATTAGTACTGTGCCACTCGCCACTCATATAGATCATTTGTTTGTGTCTATTGTACTGTTGCAGCTAGAGAAAGAACATGCAAGTAAGACTGATCATTGCATATTGTATACTGTAGGCTATTTGTGCttatgacaataaaaacttGAAACATCAGGCAAAACC
>XM_034305889.1
ctattttatccgggcttgggtctgtcactgagagtgcactgttgcacgcaaccccagtggctgggattAGTTCCCTTgccgggaattgaacccaggccTCTGCGGTGAGAGCACTCCAGGGACCCTAGACCTCCAGGAACCCAAGaacCCAGAAAATGGCAAACAACACCACCGAGTTCTCCTGCCCCTCAATTGATGACTTCCGTAACCAGGTCTATTCCACTGCCTACTCCATCATCACCATTTTTGGCCTGGTGGGTAATGGCTTTGCCCTGGTGGTGCTCATCCGGACCTACCGCCAGTCCTCTGCCTTCCATGTGTACATGCTGAACCTGGCAGTGgcggacctgctgtgtgtgtgcacactgcCTTTCCGCGTTCTCTACTATGTGCAAAAGGGCCACTGGATACTTGGTGACTTCCTGTGCCGCATCAGCTCGTATGCGCTCTATGTCAACCTCTACTGCAGCATTTTCTTCATGATGGCCATGAGCTTTACACGTTTCCTGGCCATCGTCTTCCCTGTGCAGAATCTGCGCATGGCCACTGAGCGGCGGGCGCGAGTGGTCTGCGCCTGCATTTGGGTCTTCATCTGTTCCACCAGCTCACCGTTCCTGCTCTCCGGCCAGCACACTGACCCGAAGACCAACAAAACCAAATGCTTTGAGCCACCGGAGGAATCGGGCAGCCTAAAGAAGCTGGTGGTGCTCAATTACTTCTCACTGGTGGTGGGTTTCATTGTGCCCTTTTTAGTGATCCTGGTTTGCTATGTTGGCATTGTGCGGGCACTGCTGGGCAACTCCAATGCAATGAAGAAGCAGCAGAACACGCGCACCAAGGCCATCCGTATGATCATAGTTGTCATGCTGGCCTTCTTGGTCAGCTTCATGCCCTACCACGTGCAGCGCACCGTGCACCTCCACTTTAAAAAGCAAGGGGCCTCATGTGATGAGATCAATTACATGCAGAAGTCGGTGGTGATCACGCTGTGCCTGGCTGCTGCCAACTCCTGCTTCGACCCCATGCTTTACTTCTTTTCGGGTGAGAACTTCCGTCACAGACTCTCCACTTTCCGCAAGGCATCACTGAATTCCCTGAACATGAAGCGCAACCGCAATTTGCCATCGTCTTCCCGTCCATTACAGCAGAGCGACCTGGAGAAATGTAATAGCTCAAGCAATCTTGGGTAATCCTAAAGATGACAGTGCCTCCTGGCTAAACGAACGAGCAAGCAGTGAGCAAGCATGATGTCgttggattttgtttgatttcatagaaaattaattcataaaaaatggCATTCACCTTGCCATTAAGCTTAAACCTAATCTTAACCTTTGAAGTGAATTCAGTTGTGCAAACTGGTGCCTCAAGGAATTAAAAAGAAGCGACTGTTGCTCATTGTGGAAACTCAGGTTCAACCTGAAGGACCTGAAGGTAGGGTAATCATTGAAGAAAGCTCAGTATTATTATGGTCCAAGAAGTGGAAATGAAGCTTACctgttttattgcacttttctttttctggatattaattagcaaagaaaaaaatccagaaaacgAAAAGAAGATAAAGGCTTACACAGATTCTATATTAACTTACTATAAATGGACTCACAGAACAGTAGCCTGCTTACAAAATAATGTGTATACTGTATTAATGATGCTGCTTTAAATCTGTAAGGCAATGACGGATTACCACTGACAGATTGTTGGGCcaatctgcttttttttattattattatatgttcaTATTAATACTGATTAGCATAATGTGCTTATATTTTGTAATGTACCTATTGTATGTTAATAATTGCAAATGttaatgtattgtgtatgtACAGTGCAAATGCAGCAAggcatatttatatacaaaagACAACTTTTTTATACCATGCAAAcagactcattcacacctagggtcaaATCAGAGTTGCCACCCACCTACTGTGTTATTTGGAACATGGGTACTGTAGGACATGCCAAACTCTGCACAgagagtaacccgagctcaggatgtACCCAGACGCTAGAGCTATGAAGGACCAATTTGTTAATTGCGCTGTTATGGcgaaccatttctgttgtaagatatattCTAAAGCTTGGGaaagggaaagggggattatggagtggatactGTCTGTACTAGGCGATGACAAAAAAAGGCATACTGCAGTTATTTATTGCAAATTGTACCATTTTGTGCACCACAGTGTacttgtttcccatgcaaagactgggaagatgggaaaaaaaagtccagtGCCATTTTTGGGCTTGTTTCAGTCtttcagttttagttttttgtgatgtagttgagctggaacatttttttttgagacCTGGCAACTCTGTCCACAAAGTTAAATTACTACAGTGGACAGCCATTTATGTGTCACCCTTCAGTTCTGATAGTATTACAGTATTCTAGCGACATCTAGTGGCTGAAATGGCAACTGCATAAGAAGatacatttgtacatttggTAACATAATACAAGAACAACAGACTGCTAGTACTAGTGTGCCATtaatacatgtttttctttaatatatgCACTAAAATTCAGTTGAACAGTATAGTATGTCATATTGGCTATCTATTAAGCGTTACTGATAGTAATTAGTCTATTATAATGTCGTAGCTTTAATCAACTAAAAGTAATATAGCATGAAGGCGTACCGACTATCATGTAAATTTTTGTTAATTGAAGATAgcatatttaagatttttaataAGGTACATAAATGATTACTTTTCACACTGCAGAAGATAGCTAAATGGGTTTGCATTATGCAATTTTTCGGTTGATTTGTAAAGACGGACAAATAAAACCCAAACTAAAAGTGCAGACCCCCCCCCCATCATTATTCTAACAATGGAGTGATTCATTTTCTTGTGCTTTCTCCAGCCTCAAAACTACTTACTGAACTCTTATAACCCACATGTCCATAATTAACACTCAGACTGAATCAACACAAACAATAAAGACGGCAAGCTGTCGCAGAGTATAGTACTACTGTAGATACTGTAGATACACTTCAAGTCACGTGAACGACTGCTACCATCCCAACACTCCGAAATAAGTAACTGTGCAATGTATTAGTACTGTGCCACTCGCCACTCATATAGATCATTTGTTTGTGTCTATTGTACTGTTGCAGCTAGAGAAAGAACATGCAAGTAAGACTGATCATTGCATATTGTATACTGTAGGCTATTTGTGCttatgacaataaaaacttGAAACATCAGGCAAAACC

Function

symbol description
cysltr1 Predicted to enable G protein-coupled peptide receptor activity. Predicted to be involved in neuropeptide signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in axial vasculature; cardiovascular system; pronephros; and ventral mesoderm. Human ortholog(s) of this gene implicated in allergic disease; asthma; and rhinitis. Orthologous to human CYSLTR1 (cysteinyl leukotriene receptor 1).

NR:

description
PREDICTED: cysteinyl leukotriene receptor 1-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004974 leukotriene receptor activity molecular_function

KEGG:

id description
K04322 CYSLTR1; cysteinyl leukotriene receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940480.2 True 3361 mRNA 0.43 2 10225121 10229783
XM_034305889.1 False 3266 mRNA 0.42 2 10225121 10233471

Neighbor

gene id symbol gene type direction distance location
LOC113542752 LOC108269204 coding downstream 1581 10175648 ~ 10223540 (-)
rraga LOC108268916,LOC103366304,LOC105906309,LOC100704732,LOC107386560,LOC102229095,LOC101162152,LOC105927798 coding downstream 53151 10158692 ~ 10171970 (-)
LOC113542803 LOC108268917,LOC108443108,LOC103043510,LOC103366846,LOC106530016,LOC103470946 coding downstream 94805 10120276 ~ 10130316 (-)
sybl1 vamp7 coding downstream 119889 10093796 ~ 10105232 (-)
rhogd rhog,LOC108269394,LOC108443105,LOC103045046,LOC107573550,LOC104923191 coding downstream 149506 10072171 ~ 10075615 (-)
LOC113542757 itm2a coding upstream 93310 10326781 ~ 10334540 (-)
LOC113542679 chmp1b,LOC104945803,LOC101476317 coding upstream 150840 10384311 ~ 10397034 (-)
hmgn6 hmgn5 coding upstream 225352 10458823 ~ 10462934 (-)
rps6kal rps6ka6,rps6kal,LOC107572332,LOC103359561,LOC104942467,LOC107746154,LOC107674878,LOC102207076 coding upstream 393069 10626540 ~ 10662608 (-)
hdx hdx coding upstream 432845 10666316 ~ 10701963 (-)
G112569 NA non-coding downstream 470 10223944 ~ 10224651 (-)
G112473 NA non-coding downstream 222129 10002779 ~ 10002992 (-)
G112459 NA non-coding downstream 254472 9970377 ~ 9970649 (-)
G112454 NA non-coding downstream 259783 9964707 ~ 9965338 (-)
G112161 NA non-coding downstream 518889 9705937 ~ 9706232 (-)
LOC117597733 NA non-coding upstream 1348 10234819 ~ 10241509 (-)
G112651 NA non-coding upstream 120234 10353705 ~ 10353904 (-)
G112689 NA non-coding upstream 212178 10445649 ~ 10445952 (-)
G112690 NA non-coding upstream 214928 10448399 ~ 10448613 (-)
G112691 NA non-coding upstream 215184 10448655 ~ 10448962 (-)
LOC113542827 slc25a53 other downstream 251326 9965785 ~ 9973795 (-)
tmsb1 NA other downstream 261121 9959576 ~ 9964000 (-)
si:ch211-153b23.4 si:ch211-153b23.4,LOC108269373,LOC108440096,LOC107570153,LOC107663089,LOC107573953,LOC107661545,LOC107746322 other downstream 631796 9587335 ~ 9593325 (-)
fgf16 fgf16 other downstream 877187 9340373 ~ 9347934 (-)
LOC113542918 NA other downstream 1859539 8362373 ~ 8365582 (-)
LOC113542749 LOC108269078 other upstream 1024980 11258451 ~ 11325468 (-)
G113398 NA other upstream 1125667 11359138 ~ 11359579 (-)
G113516 NA other upstream 1378502 11611973 ~ 11612569 (-)
G113674 NA other upstream 1585407 11818878 ~ 11858016 (-)
LOC117597634 LOC101884462,LOC101885893 other upstream 1846053 12079524 ~ 12112216 (-)

Expression


Co-expression Network