rps6kal (rps6ka6,rps6kal,LOC107572332,LOC103359561,LOC104942467,LOC107746154,LOC107674878,LOC102207076)


Basic Information

Item Value
gene id rps6kal
gene name rps6ka6,rps6kal,LOC107572332,LOC103359561,LOC104942467,LOC107746154,LOC107674878,LOC102207076
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 10626540 ~ 10662608 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940499.2
CGCTGTGTTGCTATGGGGCGCGCGGAGGCGGCCATGTTGCCCATGTTCGTGTCAATGGGAAAGTAAAGAGGCGGCCGGGTTCGTTTATGGTCCGATACTCGAGCCGAGCCTCCTGAAGCGAGTCTCTGGCCGAGCTGCATCCCAGAGTCAGACTTCCTGACATTGCTATCTGAATTCATATTAACATCTGAGTTGCGTGTCATTGTGAACCTGAGCTAGCCGAGCTTCCGCAGCGAAGGCATGGCTCGCCATACGCGGCTCTAGTTCTACCTTATGATGCCTTTTGCCCGGCCATTGCATTCCTGGCACAAAATGGAGGTGCACAGCTTTAGCGGCGAGATCAACGGGCATCAGGTCGCAGATGAGCCGATGGAAGAGGGAGAATCCTGCACACACTGTGATGACGGGTCCTATAAGGAGATCCCCATCACTCATCACGTAAAGGAGGGCTGTGAAAAGGCTGACCCTTCCCAATTTGAGCTGCTTAAAGTACTGGGCCAGGGATCGTTCGGAAAGGTGTTCTTGGTGAGGAAGATAATGGGCCCAGATGCTGGTCAGCTGTATGCAATGAAAGTCCTCAAAAAGGCATCATTAAAAGTGAGGGACAGGGTTCGCACAAAGATGGAACGAGATATTCTGGTGGAAGTGAATCATCCCTTCATTGTGAAGTTGCACTATGCCTTTCAGACAGAAGGGAAGCTCTATTTAATTTTGGATTTTCTCAGGGGTGGAGATGTATTTACTCGCTTATCCAAAGAGGTTATGTTTACAGAGGAGGATGTGAAATTCTACCTTGCAGAGCTGGCCCTTGCATTGGATCACCTTCACAACCTAGGCATTGTTTACAGAGACCTGAAGCCTGAAAACATTTTGCTTGATGAAGCTGGACATATCAAGCTAACAGACTTCGGGCTCAGTAAAGAATCAGTAGACCAGGATAGGAAAGCGTACTCTTTTTGTGGCACTGTGGAATATATGGCCCCTGAGGTGGTCAACAggagaggacacacacagagtgctgaCTGGTGGTCTCTTGGTGTTCTAATGTTTGAAATGCTGACAGGGACATTACCATTTCAAGGGAAAGACCGGAATGAGACAATGAACATGATTCTTAAAGCTAAATTGGGAATGCCACAGTTTTTAAGTTTGGAAGCACAGAGTCTTTTAAGAATGCTCTTTAAAAGAAACCCAGCAAATCGTTTAGGAGCCGGTCCAGATGGCGTAGAAGAGATCAAACGACACGCCTTTTTCTCCACCATAGACTGGAACAAGCTGTACCGGTGCGAACTTCAGCCTCCTTTCAAACCAGCAGCGGGAAAACCAGACGACACATTCTGCTTTGACCCTGAGTTCACAGCAAAAACCCCAAAGGACTCTCCAGGCATTCCTCCCAGTGCAAATGCACACCAGCTCTTCAAAGGCTTCAGCTTTGTAGCGCCAGTCTCCCTGGAGGAGAGCAAGAGCTCCCCTCTAGTTAGCATCCTCCCCATTGTTCAGATGCATAGCGGCACAGCACAGTTCTCGGACGTGTACGAGCTGAAAGAGGACATCGGCGTGGGCTCGTACTCCATATGCAAGCGCTGCATCCACAGAGTCACAACTATGGAGTTCGCAGTGAAGATTATTGACAAAAGTAAACGAGACCCTTCAGAGGAGATTGAAATTCTTATGCGGTACGGCCAGCACCCGAATATCATTACATTGAAGGATGTGTATGATGAGGGGCGATTTGTGTATCTGGTAACGGAGCTAATGAAGGGAGGAGAGCTGTTGGATAAGATTCTCAGGCAGAAGTTCTTCTCAGAACGAGAAGCAAGCGCTGTGCTCTACACCATCACCAAAACGGTGGACTATTTGCACTGCCAAGGGgtGGTTCATAGGGACCTGAAGCCCAGCAACATTCTGTACATGGACGATTCGGGGAACCCCGACTCCATCCGAATCTGCGACTTTGGCTTTGCCAAGCAGTTGAGGGGGGATAATGGCCTTCTGCTCACACCGTGTTACACTGCTAACTTTGTAGCGCCCGAGGTATTGATGCGTCAGGGTTATGATGCAGCCTGTGACATCTGGAGTCTGGGCGTTCTTCTTTATACCATGTTAGCTGGGTACACCCCTTTCGCTAACGGCCCCAATGACACCCCAGAGGAGATTCTATTGCGTATCGGCAGTGGCAAGTTCTCTCTCAGTGGAGGAAACTGGGACACCGTATCTGACTCCTCAAAGGATCTTTTGTCTCACATGCTTCATGTGGACCCTCATCAGCGGTATTCGGCCGAGCAGGTACTGAAACACTCATGGATTGCCTGCCGGGACCAGCTGCCCCATTTCCAGCTCACCCGACACGATGCACCTCACCTGGTTAAGGGAGCAATGGCTGCCACATACTCAGCATTGAATCATAAGACATGCCAGCCAGTCCTGGAACCTGTGGCAGCTTCCAGTTTGGCCCAGCGCAGAAGCATGAAGAAGTTAACTTCCACTGACATGTTGTGAACAGAAGCATCTTCACATCACTGTGTTCTCTCCTCCccattttgtctatttatttgtttgctccTGTCCCCACTGTTTGGCATTTTTCCTCAGCACCTACACATTGTAATTGGACATGAGACATTGTCTATTTGGACACTTTGACATTAGGGAGGCTGTTTAGCAAGTTACAGACTGAGAGACTGCACTGAACATGGCTGAAATCTAAATCCAAAATGCTGCAgggctgcagtgtgtgtttttttttttttccccatttcctcTTATATGCATTCTCTGGAACTCtccatttttgtcttttctcgatcattcttcattttctctctccctctttcccgcTAAGTGGAAAAACAGCACCAGCGCCTATTCTCATTCACTGTGACTGGCTGACCTAAAGCTGCTTTAAGTAAACTGTGCTCTGCCTTCCTTCCCCAGTTTAAAACACCTCTGTTCATTCGCCACTCCTCTTCTCCCTCTGTCTTGATCAGCCTACTCCTGTCTCTTGATAGTTTATCTGAGAGGAAAGGTGCGTTTTGGAAGTTTCCTGTCTTTTAAAGCCATTTAGCATGCGGCTGGAGGAATCAGTGTATCTGAACCACTCAATGTTACCTCAAGTCGAGTTGATGAGCTGAAAGCGGAGACTTCTTTAAGCTTTCAATGAGTGTATATAGAATTTAGCGCCAGAGAGATTGTCAAACCCGACCCGATCAACCCCCATCATATCAATTATATTTAAGCAGATTTGCACTGAAGCTTGTCAGGTTGttgcttttgcattttttttttttattttttgcccaTACCCCAACTTgatccttttttaattttctatttgtgttaaaaaaataa
>XM_026940500.2
AGGGAAGCTCTATTTAATTTTGGATTTTCTCAGGGGTGGAGATGTATTTACTCGCTTATCCAAAGAGTTCTTACTAGGTTATGTTTACAGAGGAGGATGTGAAATTCTACCTTGCAGAGCTGGCCCTTGCATTGGATCACCTTCACAACCTAGGCATTGTTTACAGAGACCTGAAGCCTGAAAACATTTTGCTTGATGAAGCTGGACATATCAAGCTAACAGACTTCGGGCTCAGTAAAGAATCAGTAGACCAGGATAGGAAAGCGTACTCTTTTTGTGGCACTGTGGAATATATGGCCCCTGAGGTGGTCAACAggagaggacacacacagagtgctgaCTGGTGGTCTCTTGGTGTTCTAATGTTTGAAATGCTGACAGGGACATTACCATTTCAAGGGAAAGACCGGAATGAGACAATGAACATGATTCTTAAAGCTAAATTGGGAATGCCACAGTTTTTAAGTTTGGAAGCACAGAGTCTTTTAAGAATGCTCTTTAAAAGAAACCCAGCAAATCGTTTAGGAGCCGGTCCAGATGGCGTAGAAGAGATCAAACGACACGCCTTTTTCTCCACCATAGACTGGAACAAGCTGTACCGGTGCGAACTTCAGCCTCCTTTCAAACCAGCAGCGGGAAAACCAGACGACACATTCTGCTTTGACCCTGAGTTCACAGCAAAAACCCCAAAGGACTCTCCAGGCATTCCTCCCAGTGCAAATGCACACCAGCTCTTCAAAGGCTTCAGCTTTGTAGCGCCAGTCTCCCTGGAGGAGAGCAAGAGCTCCCCTCTAGTTAGCATCCTCCCCATTGTTCAGATGCATAGCGGCACAGCACAGTTCTCGGACGTGTACGAGCTGAAAGAGGACATCGGCGTGGGCTCGTACTCCATATGCAAGCGCTGCATCCACAGAGTCACAACTATGGAGTTCGCAGTGAAGATTATTGACAAAAGTAAACGAGACCCTTCAGAGGAGATTGAAATTCTTATGCGGTACGGCCAGCACCCGAATATCATTACATTGAAGGATGTGTATGATGAGGGGCGATTTGTGTATCTGGTAACGGAGCTAATGAAGGGAGGAGAGCTGTTGGATAAGATTCTCAGGCAGAAGTTCTTCTCAGAACGAGAAGCAAGCGCTGTGCTCTACACCATCACCAAAACGGTGGACTATTTGCACTGCCAAGGGgtGGTTCATAGGGACCTGAAGCCCAGCAACATTCTGTACATGGACGATTCGGGGAACCCCGACTCCATCCGAATCTGCGACTTTGGCTTTGCCAAGCAGTTGAGGGGGGATAATGGCCTTCTGCTCACACCGTGTTACACTGCTAACTTTGTAGCGCCCGAGGTATTGATGCGTCAGGGTTATGATGCAGCCTGTGACATCTGGAGTCTGGGCGTTCTTCTTTATACCATGTTAGCTGGGTACACCCCTTTCGCTAACGGCCCCAATGACACCCCAGAGGAGATTCTATTGCGTATCGGCAGTGGCAAGTTCTCTCTCAGTGGAGGAAACTGGGACACCGTATCTGACTCCTCAAAGGATCTTTTGTCTCACATGCTTCATGTGGACCCTCATCAGCGGTATTCGGCCGAGCAGGTACTGAAACACTCATGGATTGCCTGCCGGGACCAGCTGCCCCATTTCCAGCTCACCCGACACGATGCACCTCACCTGGTTAAGGGAGCAATGGCTGCCACATACTCAGCATTGAATCATAAGACATGCCAGCCAGTCCTGGAACCTGTGGCAGCTTCCAGTTTGGCCCAGCGCAGAAGCATGAAGAAGTTAACTTCCACTGACATGTTGTGAACAGAAGCATCTTCACATCACTGTGTTCTCTCCTCCccattttgtctatttatttgtttgctccTGTCCCCACTGTTTGGCATTTTTCCTCAGCACCTACACATTGTAATTGGACATGAGACATTGTCTATTTGGACACTTTGACATTAGGGAGGCTGTTTAGCAAGTTACAGACTGAGAGACTGCACTGAACATGGCTGAAATCTAAATCCAAAATGCTGCAgggctgcagtgtgtgtttttttttttttccccatttcctcTTATATGCATTCTCTGGAACTCtccatttttgtcttttctcgatcattcttcattttctctctccctctttcccgcTAAGTGGAAAAACAGCACCAGCGCCTATTCTCATTCACTGTGACTGGCTGACCTAAAGCTGCTTTAAGTAAACTGTGCTCTGCCTTCCTTCCCCAGTTTAAAACACCTCTGTTCATTCGCCACTCCTCTTCTCCCTCTGTCTTGATCAGCCTACTCCTGTCTCTTGATAGTTTATCTGAGAGGAAAGGTGCGTTTTGGAAGTTTCCTGTCTTTTAAAGCCATTTAGCATGCGGCTGGAGGAATCAGTGTATCTGAACCACTCAATGTTACCTCAAGTCGAGTTGATGAGCTGAAAGCGGAGACTTCTTTAAGCTTTCAATGAGTGTATATAGAATTTAGCGCCAGAGAGATTGTCAAACCCGACCCGATCAACCCCCATCATATCAATTATATTTAAGCAGATTTGCACTGAAGCTTGTCAGGTTGttgcttttgcattttttttttttattttttgcccaTACCCCAACTTgatccttttttaattttctatttgtgttaaaaaaataa
>XM_034305929.1
CGCTGTGTTGCTATGGGGCGCGCGGAGGCGGCCATGTTGCCCATGTTCGTGTCAATGGGAAAGTAAAGAGGCGGCCGGGTTCGTTTATGGTCCGATACTCGAGCCGAGCCTCCTGAAGCGAGTCTCTGGCCGAGCTGCATCCCAGAGTCAGACTTCCTGACATTGCTATCTGAATTCATATTAACATCTGAGTTGCGTGTCATTGTGAACCTGAGCTAGCCGAGCTTCCGCAGCGAAGGCATGGCTCGCCATACGCGGCTCTAGTTCTACCTTATGATGCCTTTTGCCCGGCCATTGCATTCCTGGCACAAAATGGAGGTGCACAGCTTTAGCGGCGAGATCAACGGGCATCAGGTCGCAGATGAGCCGATGGAAGAGGGAGAATCCTGCACACACTGTGATGACGGGTCCTATAAGGAGATCCCCATCACTCATCACGTAAAGGAGGGCTGTGAAAAGGCTGACCCTTCCCAATTTGAGCTGCTTAAAGTACTGGGCCAGGGATCGTTCGGAAAGTCAGCCCACTTATTCTTGATCTAAGGTGTTCTTGGTGAGGAAGATAATGGGCCCAGATGCTGGTCAGCTGTATGCAATGAAAGTCCTCAAAAAGGCATCATTAAAAGTGAGGGACAGGGTTCGCACAAAGATGGAACGAGATATTCTGGTGGAAGTGAATCATCCCTTCATTGTGAAGTTGCACTATGCCTTTCAGACAGAAGGGAAGCTCTATTTAATTTTGGATTTTCTCAGGGGTGGAGATGTATTTACTCGCTTATCCAAAGAGGTTATGTTTACAGAGGAGGATGTGAAATTCTACCTTGCAGAGCTGGCCCTTGCATTGGATCACCTTCACAACCTAGGCATTGTTTACAGAGACCTGAAGCCTGAAAACATTTTGCTTGATGAAGCTGGACATATCAAGCTAACAGACTTCGGGCTCAGTAAAGAATCAGTAGACCAGGATAGGAAAGCGTACTCTTTTTGTGGCACTGTGGAATATATGGCCCCTGAGGTGGTCAACAggagaggacacacacagagtgctgaCTGGTGGTCTCTTGGTGTTCTAATGTTTGAAATGCTGACAGGGACATTACCATTTCAAGGGAAAGACCGGAATGAGACAATGAACATGATTCTTAAAGCTAAATTGGGAATGCCACAGTTTTTAAGTTTGGAAGCACAGAGTCTTTTAAGAATGCTCTTTAAAAGAAACCCAGCAAATCGTTTAGGAGCCGGTCCAGATGGCGTAGAAGAGATCAAACGACACGCCTTTTTCTCCACCATAGACTGGAACAAGCTGTACCGGTGCGAACTTCAGCCTCCTTTCAAACCAGCAGCGGGAAAACCAGACGACACATTCTGCTTTGACCCTGAGTTCACAGCAAAAACCCCAAAGGACTCTCCAGGCATTCCTCCCAGTGCAAATGCACACCAGCTCTTCAAAGGCTTCAGCTTTGTAGCGCCAGTCTCCCTGGAGGAGAGCAAGAGCTCCCCTCTAGTTAGCATCCTCCCCATTGTTCAGATGCATAGCGGCACAGCACAGTTCTCGGACGTGTACGAGCTGAAAGAGGACATCGGCGTGGGCTCGTACTCCATATGCAAGCGCTGCATCCACAGAGTCACAACTATGGAGTTCGCAGTGAAGATTATTGACAAAAGTAAACGAGACCCTTCAGAGGAGATTGAAATTCTTATGCGGTACGGCCAGCACCCGAATATCATTACATTGAAGGATGTGTATGATGAGGGGCGATTTGTGTATCTGGTAACGGAGCTAATGAAGGGAGGAGAGCTGTTGGATAAGATTCTCAGGCAGAAGTTCTTCTCAGAACGAGAAGCAAGCGCTGTGCTCTACACCATCACCAAAACGGTGGACTATTTGCACTGCCAAGGGgtGGTTCATAGGGACCTGAAGCCCAGCAACATTCTGTACATGGACGATTCGGGGAACCCCGACTCCATCCGAATCTGCGACTTTGGCTTTGCCAAGCAGTTGAGGGGGGATAATGGCCTTCTGCTCACACCGTGTTACACTGCTAACTTTGTAGCGCCCGAGGTATTGATGCGTCAGGGTTATGATGCAGCCTGTGACATCTGGAGTCTGGGCGTTCTTCTTTATACCATGTTAGCTGGGTACACCCCTTTCGCTAACGGCCCCAATGACACCCCAGAGGAGATTCTATTGCGTATCGGCAGTGGCAAGTTCTCTCTCAGTGGAGGAAACTGGGACACCGTATCTGACTCCTCAAAGGATCTTTTGTCTCACATGCTTCATGTGGACCCTCATCAGCGGTATTCGGCCGAGCAGGTACTGAAACACTCATGGATTGCCTGCCGGGACCAGCTGCCCCATTTCCAGCTCACCCGACACGATGCACCTCACCTGGTTAAGGGAGCAATGGCTGCCACATACTCAGCATTGAATCATAAGACATGCCAGCCAGTCCTGGAACCTGTGGCAGCTTCCAGTTTGGCCCAGCGCAGAAGCATGAAGAAGTTAACTTCCACTGACATGTTGTGAACAGAAGCATCTTCACATCACTGTGTTCTCTCCTCCccattttgtctatttatttgtttgctccTGTCCCCACTGTTTGGCATTTTTCCTCAGCACCTACACATTGTAATTGGACATGAGACATTGTCTATTTGGACACTTTGACATTAGGGAGGCTGTTTAGCAAGTTACAGACTGAGAGACTGCACTGAACATGGCTGAAATCTAAATCCAAAATGCTGCAgggctgcagtgtgtgtttttttttttttccccatttcctcTTATATGCATTCTCTGGAACTCtccatttttgtcttttctcgatcattcttcattttctctctccctctttcccgcTAAGTGGAAAAACAGCACCAGCGCCTATTCTCATTCACTGTGACTGGCTGACCTAAAGCTGCTTTAAGTAAACTGTGCTCTGCCTTCCTTCCCCAGTTTAAAACACCTCTGTTCATTCGCCACTCCTCTTCTCCCTCTGTCTTGATCAGCCTACTCCTGTCTCTTGATAGTTTATCTGAGAGGAAAGGTGCGTTTTGGAAGTTTCCTGTCTTTTAAAGCCATTTAGCATGCGGCTGGAGGAATCAGTGTATCTGAACCACTCAATGTTACCTCAAGTCGAGTTGATGAGCTGAAAGCGGAGACTTCTTTAAGCTTTCAATGAGTGTATATAGAATTTAGCGCCAGAGAGATTGTCAAACCCGACCCGATCAACCCCCATCATATCAATTATATTTAAGCAGATTTGCACTGAAGCTTGTCAGGTTGttgcttttgcattttttttttttattttttgcccaTACCCCAACTTgatccttttttaattttctatttgtgttaaaaaaataa

Function

symbol description
rps6kal Predicted to enable ribosomal protein S6 kinase activity. Predicted to be involved in DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator and peptidyl-serine phosphorylation. Predicted to act upstream of or within intracellular signal transduction and protein phosphorylation. Predicted to be active in cytoplasm and nucleoplasm. Orthologous to human RPS6KA6 (ribosomal protein S6 kinase A6).
rps6ka6 Predicted to enable ribosomal protein S6 kinase activity. Involved in DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator. Located in fibrillar center; mitochondrion; and nucleoplasm.

NR:

description
PREDICTED: ribosomal protein S6 kinase alpha-6 isoform X2

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940499.2 False 3348 mRNA 0.48 22 10626540 10662608
XM_026940500.2 False 2666 mRNA 0.46 17 10626540 10649834
XM_034305929.1 True 3373 mRNA 0.47 22 10626540 10662608

Neighbor

gene id symbol gene type direction distance location
hmgn6 hmgn5 coding downstream 163606 10458823 ~ 10462934 (-)
LOC113542679 chmp1b,LOC104945803,LOC101476317 coding downstream 229506 10384311 ~ 10397034 (-)
LOC113542757 itm2a coding downstream 292000 10326781 ~ 10334540 (-)
cysltr1 cysltr1 coding downstream 393069 10225121 ~ 10233471 (-)
LOC113542752 LOC108269204 coding downstream 403000 10175648 ~ 10223540 (-)
hdx hdx coding upstream 3708 10666316 ~ 10701963 (-)
LOC113542771 tenm1 coding upstream 237413 10900021 ~ 11041414 (-)
LOC113542731 NA coding upstream 429089 11091697 ~ 11099390 (-)
asb12b asb12 coding upstream 705586 11368194 ~ 11371193 (-)
LOC113542810 zc4h2,LOC108269407,LOC108436709,LOC103036162 coding upstream 725894 11388502 ~ 11398896 (-)
G112745 NA non-coding downstream 119597 10495298 ~ 10506943 (-)
G112691 NA non-coding downstream 177578 10448655 ~ 10448962 (-)
G112690 NA non-coding downstream 177927 10448399 ~ 10448613 (-)
G112689 NA non-coding downstream 180588 10445649 ~ 10445952 (-)
G112651 NA non-coding downstream 272636 10353705 ~ 10353904 (-)
LOC113542794 NA non-coding upstream 153140 10815748 ~ 10843262 (-)
G112962 NA non-coding upstream 192291 10854899 ~ 10856847 (-)
G112963 NA non-coding upstream 194375 10856983 ~ 10857542 (-)
G112964 NA non-coding upstream 195032 10857640 ~ 10859416 (-)
G112967 NA non-coding upstream 197172 10859780 ~ 10859996 (-)
LOC113542827 slc25a53 other downstream 652745 9965785 ~ 9973795 (-)
tmsb1 NA other downstream 662540 9959576 ~ 9964000 (-)
si:ch211-153b23.4 si:ch211-153b23.4,LOC108269373,LOC108440096,LOC107570153,LOC107663089,LOC107573953,LOC107661545,LOC107746322 other downstream 1033215 9587335 ~ 9593325 (-)
fgf16 fgf16 other downstream 1278606 9340373 ~ 9347934 (-)
LOC113542918 NA other downstream 2260958 8362373 ~ 8365582 (-)
LOC113542749 LOC108269078 other upstream 595843 11258451 ~ 11325468 (-)
G113398 NA other upstream 696530 11359138 ~ 11359579 (-)
G113516 NA other upstream 949365 11611973 ~ 11612569 (-)
G113674 NA other upstream 1156270 11818878 ~ 11858016 (-)
LOC117597634 LOC101884462,LOC101885893 other upstream 1416916 12079524 ~ 12112216 (-)

Expression


Co-expression Network