zgc:174917 (LOC108268429,LOC108440103)


Basic Information

Item Value
gene id zgc:174917
gene name LOC108268429,LOC108440103
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 9598787 ~ 9601926 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940632.2
CATGGCTAAAAATAGACAGCAATTTACGGCATGGAGTTTAAACTACTATGATGACTTAATTCAGGAAGTTCCCGATTTACTCGCAATGTATATAAGAGTGAGGATTTAGGCAGTTGACAGCAAGTTTCAGCTGAGACATCAGCCAGACTTACACTGACCAGACATATCTACTGCAGTCTTCAGGCCCTTGAGGagcagaaagaaagcaagacacTTGTCAACCCCTGAACAACAGAAGAACTTCTCCATCATCTACAGTCATGGGATTCGAGAGAACAGAAGTAAAGACTCTGTACGAGAAACAGGGCTATGTGACCAGCATTCCTATCCTCAGCCCTGAAGAGCTCCAGGAGGCCAGAGATGCCTTTGCTGAGCTGGAGAGAACATTTGGTGAGGATTACACTTCCTACAGCCTGCACAATGTGCATATGAAGTACGACTGGGTAAAGGCACTAACCAAACACCCTAGAGTTCTTGAGGTGATCACTGCAGTCCTGGGTCCTGATGTTCTCCTGCTGGACTCACGCTTCATCTGCAAATACCCAGTctcaaaacaaagcaaaattcaAGGGAGCAATGACATCATTCCACACAACCAAGAGAATGAGGGCCAGAAGAACGAGTCTGATCAAGAAAGTGAGGACAGGCTTCCATACGTGGCCTGGCATCAGGATATGAAGTATTGGGGACTTGATGGAGGGCCAGTTGTCTCGGTCTGGCTTGCATTGGATGACTCCCAGGAAGAAAATGGTGCCCTCCAGGTCATTCCAGGAAGTCACTTCTCTGGCCTTTTGCCCCATCGCCAAGCAAAGCGTGTAGGCAACATGCTGAGTGTTAATCAAGAAATCCCAGATGAGCTGGTTGAGAAAGAGAAGGCCTTGCTCTGCCCCCTTCTCGCAGGGCAAATGTCTATCCATGATGGACTCCTGGTGCATGCTAGTGATCCCAACACATCAGGAAAGAGGCGTTGTGGCTTTGTGATCCGCTATGTTCCTACTGCAGCTTATCCAATTCAGGATCCTGAACGGCCGAGGCGTTTCCTTGCAACAGTAGTGGTTAGTGGACAAGACAAGTATAACCACTTCTCAAGTCAAAAACCTGAACTATGATTTAACTGAAATGCTTTGATCAGGGGTAGTATGCAACTGTCTGTACTGTATATCTGAAATATCTGAAAATACATGTTAATTTAAAACTCTCTACCTTCTCCTTATTTTACTGATAAAATTATAACCGAATTACAGAAGATTTGGTAATTAATGTACTGTTTGATTTGATATAGAATGATAGTAGTCCACTGTAGTTTCTTCCTTTGTATTACTTGAAATTCTTAATTTTTAAGAATTCAGTTCACTGCTttaagaaatgtgaaaaaagtttgtttagtatgaaagaaaataaataaatattgtactATATGCTTTCACGGCAAa
>XM_026940633.2
AAACATGGCTAAAAATAGACAGCAATTTACGGCATGGAGTTTAAACTACTATGATGACTTAATTCAGGAAGTTCCCGATTTACTCGCAATGTATATAAGAGTGAGGATTTAGGCAGTTGACAGCAAGTTTCAGCTGAGACATCAGCCAGACTTACACTGACCAGACTTTTTTGTCATTGACACAGACATATCTACTGCAGTCTTCAGGCCCTTGAGGagcagaaagaaagcaagacacTTGTCAACCCCTGAACAACAGAAGAACTTCTCCATCATCTACAGTCATGGGATTCGAGAGAACAGAAGTAAAGACTCTGTACGAGAAACAGGGCTATGTGACCAGCATTCCTATCCTCAGCCCTGAAGAGCTCCAGGAGGCCAGAGATGCCTTTGCTGAGCTGGAGAGAACATTTGGTGAGGATTACACTTCCTACAGCCTGCACAATGTGCATATGAAGTACGACTGGGTAAAGGCACTAACCAAACACCCTAGAGTTCTTGAGGTGATCACTGCAGTCCTGGGTCCTGATGTTCTCCTGCTGGACTCACGCTTCATCTGCAAATACCCAGTctcaaaacaaagcaaaattcaAGGGAGCAATGACATCATTCCACACAACCAAGAGAATGAGGGCCAGAAGAACGAGTCTGATCAAGAAAGTGAGGACAGGCTTCCATACGTGGCCTGGCATCAGGATATGAAGTATTGGGGACTTGATGGAGGGCCAGTTGTCTCGGTCTGGCTTGCATTGGATGACTCCCAGGAAGAAAATGGTGCCCTCCAGGTCATTCCAGGAAGTCACTTCTCTGGCCTTTTGCCCCATCGCCAAGCAAAGCGTGTAGGCAACATGCTGAGTGTTAATCAAGAAATCCCAGATGAGCTGGTTGAGAAAGAGAAGGCCTTGCTCTGCCCCCTTCTCGCAGGGCAAATGTCTATCCATGATGGACTCCTGGTGCATGCTAGTGATCCCAACACATCAGGAAAGAGGCGTTGTGGCTTTGTGATCCGCTATGTTCCTACTGCAGCTTATCCAATTCAGGATCCTGAACGGCCGAGGCGTTTCCTTGCAACAGTAGTGGTTAGTGGACAAGACAAGTATAACCACTTCTCAAGTCAAAAACCTGAACTATGATTTAACTGAAATGCTTTGATCAGGGGTAGTATGCAACTGTCTGTACTGTATATCTGAAATATCTGAAAATACATGTTAATTTAAAACTCTCTACCTTCTCCTTATTTTACTGATAAAATTATAACCGAATTACAGAAGATTTGGTAATTAATGTACTGTTTGATTTGATATAGAATGATAGTAGTCCACTGTAGTTTCTTCCTTTGTATTACTTGAAATTCTTAATTTTTAAGAATTCAGTTCACTGCTttaagaaatgtgaaaaaagtttgtttagtatgaaagaaaataaataaatattgtactATATGCTTTCACGGCAAa

Function

NR:

description
uncharacterized protein LOC110519491

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940632.2 False 1433 mRNA 0.43 7 9598787 9601923
XM_026940633.2 True 1457 mRNA 0.43 7 9598787 9601926

Neighbor

gene id symbol gene type direction distance location
irg1l irg1l,LOC108269388,LOC108440101,LOC107570155,LOC107746176,LOC107573956,LOC107663091,LOC107661550,LOC107746319 coding downstream 23440 9570114 ~ 9575347 (-)
LOC113542799 uprt,LOC108440089 coding downstream 174673 9410848 ~ 9424114 (-)
thoc2 thoc2,LOC107733416,LOC107741598 coding downstream 397652 9121034 ~ 9201135 (-)
nlgn3a nlgn3,nlgn3a,LOC107748936,LOC107689138,LOC107663109 coding downstream 794056 8649464 ~ 8804731 (-)
pcdh20 LOC108268391 coding downstream 968738 8624773 ~ 8630049 (-)
si:ch211-153b23.7 LOC108269411 coding upstream 2699 9604625 ~ 9615161 (-)
znf711 znf711,LOC107684921,LOC107569605,LOC107746145 coding upstream 304032 9905958 ~ 9917165 (-)
zgc:66447 LOC108268886 coding upstream 316447 9918373 ~ 9946526 (-)
prps1b prps1,prps1b,LOC108413289,LOC103391169,LOC107746314,LOC107684920,LOC104923196 coding upstream 379208 9981134 ~ 9992732 (-)
rhogd rhog,LOC108269394,LOC108443105,LOC103045046,LOC107573550,LOC104923191 coding upstream 470245 10072171 ~ 10075615 (-)
G112144 NA non-coding downstream 45109 9553026 ~ 9553678 (-)
G112141 NA non-coding downstream 47735 9550812 ~ 9551052 (-)
LOC113542930 NA non-coding downstream 111718 9481256 ~ 9487069 (-)
G112026 NA non-coding downstream 198208 9400354 ~ 9400579 (-)
G111939 NA non-coding downstream 260461 9337874 ~ 9338326 (-)
G112161 NA non-coding upstream 104011 9705937 ~ 9706232 (-)
G112454 NA non-coding upstream 362781 9964707 ~ 9965338 (-)
G112459 NA non-coding upstream 368451 9970377 ~ 9970649 (-)
G112473 NA non-coding upstream 400853 10002779 ~ 10002992 (-)
G112569 NA non-coding upstream 622018 10223944 ~ 10224651 (-)
si:ch211-153b23.4 si:ch211-153b23.4,LOC108269373,LOC108440096,LOC107570153,LOC107663089,LOC107573953,LOC107661545,LOC107746322 other downstream 5462 9587335 ~ 9593325 (-)
fgf16 fgf16 other downstream 250853 9340373 ~ 9347934 (-)
LOC113542918 NA other downstream 1233205 8362373 ~ 8365582 (-)
LOC113542919 NA other downstream 1240841 8356254 ~ 8357946 (-)
canx canx,LOC107733432,LOC107667459 other downstream 1660313 7911338 ~ 7938474 (-)
tmsb1 NA other upstream 357650 9959576 ~ 9964000 (-)
LOC113542827 slc25a53 other upstream 363859 9965785 ~ 9973795 (-)
LOC113542749 LOC108269078 other upstream 1656525 11258451 ~ 11325468 (-)
G113398 NA other upstream 1757212 11359138 ~ 11359579 (-)
G113516 NA other upstream 2010047 11611973 ~ 11612569 (-)

Expression


Co-expression Network