rraga (LOC108268916,LOC103366304,LOC105906309,LOC100704732,LOC107386560,LOC102229095,LOC101162152,LOC105927798)


Basic Information

Item Value
gene id rraga
gene name LOC108268916,LOC103366304,LOC105906309,LOC100704732,LOC107386560,LOC102229095,LOC101162152,LOC105927798
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 10158692 ~ 10171970 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940637.2
AACGCACCCCGTGTTTACAATTGGTCACATGCTTTGGGGTTTTCAAGGCAGTTTTTGGAGTAGTGTTTTTACAGCCTCAATAAATCATGGAACGGGGATCTTAATGGCGTTGACGCTTTAATAAGTTAACTGTCAATGGATGGTATTTAATAGGAAGAAGAAAGCAGCAATTGAGGGCCAGtGTTGAAGACTGCAGGAGATCATCTCGGCGTGGTGTGGTGCCGTGTTCTCAGTTCGGATTGTTTACAGTAGGCTCTGTCACTGGCAGGGGAGATGTCAAGTACAGCCATGAAGAAAAAGGTGTTGTTGATGGGAAAGAGTGGCTCAGGAAAGACCAGCATGAGATCAATCATCTTCGCCAACTACATCGCCAGAGACACTCGCCGCCTGGGAGCCACAATTGATGTGGAGCACTCCCATGTGCGCTTTCTGGGCAATCTGGTGCTGAACCTGTGGGACTGTGGAGGGCAGGATACCTTCATGGAGAACTACTTCACCAGTCAGAGAGATAACATCTTCCGAAACGTAGAGGTGCTGATCTATGTGTTCGATGTGGAGAGCCGTGAGTTGGAGAAGGACATGCATTACTACCAGTCCTGCTTGGAAGCCATCCTTCAGAACTCACCCGACGCTAAAGTCTTCTGCTTAGTGCACAAAATGGACCTGGTTCAGGAAGATCAGAGAGATTTGATCTTTAAAGAACGTGAGGAAGACCTGAAGAGACTTTCCCGTCCGCTGTTATGTACCTGCTTCAGAACCTCCATTTGGGATGAGACGCTGTATAAGgcatggTCCAGCATTGTCTATCAGCTAATCCCAAATGTGCAGCAGCTCGAATCCAACTTGCGCAATTTTGCCCAGATCATTGAGGCGGATGAGGTCCTGCTTTTTGAAAGAGCCACCTTTCTGGTGATCTCTCACTACCAGTGCAAGGAGCAACGAGACGCTCACCGCTTTGAGAAGATCAgcaacattattaaacagtttaaactgaGCTGCAGTAAATTGGCTGCTTCCTTCCAGAGCATGGAAGTGCGCAACTCCAACTTTGCTGCTTTCATTGACGTGTTCACCTCCAACACCTACGTCATGGTGATCATGTCTGACCCATCTATACCCTCTGCCGCTACCCTCATCAACATTCGTAATGCCAGGAAGCATTTTGAGAAGCTGGAGAGGGTGGACGGCCCCAAGCACAGCTTGCACATGCGCATGCGTTAGACATCTAAACCCTCTCCTCAGAGGGCCTGCGTGCCAGGGAAATGGCACCCTGGGGAATTCCTCATATCTGCTGACTTCACTGCATCCAGGGTGTTTTTCTAGAGACTCTTGCCATTTTTAGATGACAAACTTTGTCGCATCCTTTCCTTGGAAGATCTGAACAAAAGGCCGGTTGGAATTGATGAGGAGCTGGCTGTAATCATGAAAATCTTGGTAATTGTGTGGATTGTTAAGccataaaacaaatgaaattttaaGGATGATGCACATTTAAATGTCCCTTAACATATGATCAGTGCCATAGCGTGAGTTGTTATTTGGACTCACATCGATCCTGTGATCATCGATCATGTCCCCCTTCTCTTTGTGTTcacttgtgtttgttttgcattgtaCGAGTGCTGCCTCTTCTGCAGCTTGCAACAATATGGTTTGTTCTGAAAATGTCTAAAGAGAACAGGACCACATTCTTGTTCTGTGGTCACTGACCATCTCAAATGAAGCAAAAGTTCACGTCTCTCCTTTTCTATACAAAAGATATTTGTTATTTCCCTATTTATTATCTTGGTGATGGCAACgcaaataaaagcaaagcaaataaaatcaaagaaagTATTACTTTTCTTACGAG

Function

NR:

description
ras-related GTP-binding protein A

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K16185 RRAGA_B; Ras-related GTP-binding protein A/B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940637.2 True 1852 mRNA 0.46 11 10158692 10171970

Neighbor

gene id symbol gene type direction distance location
LOC113542803 LOC108268917,LOC108443108,LOC103043510,LOC103366846,LOC106530016,LOC103470946 coding downstream 28376 10120276 ~ 10130316 (-)
sybl1 vamp7 coding downstream 53460 10093796 ~ 10105232 (-)
rhogd rhog,LOC108269394,LOC108443105,LOC103045046,LOC107573550,LOC104923191 coding downstream 83077 10072171 ~ 10075615 (-)
prps1b prps1,prps1b,LOC108413289,LOC103391169,LOC107746314,LOC107684920,LOC104923196 coding downstream 165960 9981134 ~ 9992732 (-)
zgc:66447 LOC108268886 coding downstream 212166 9918373 ~ 9946526 (-)
LOC113542752 LOC108269204 coding upstream 3678 10175648 ~ 10223540 (-)
cysltr1 cysltr1 coding upstream 53151 10225121 ~ 10233471 (-)
LOC113542757 itm2a coding upstream 154811 10326781 ~ 10334540 (-)
LOC113542679 chmp1b,LOC104945803,LOC101476317 coding upstream 212341 10384311 ~ 10397034 (-)
hmgn6 hmgn5 coding upstream 286853 10458823 ~ 10462934 (-)
G112473 NA non-coding downstream 155700 10002779 ~ 10002992 (-)
G112459 NA non-coding downstream 188043 9970377 ~ 9970649 (-)
G112454 NA non-coding downstream 193354 9964707 ~ 9965338 (-)
G112161 NA non-coding downstream 452460 9705937 ~ 9706232 (-)
G112144 NA non-coding downstream 605014 9553026 ~ 9553678 (-)
G112569 NA non-coding upstream 51974 10223944 ~ 10224651 (-)
LOC117597733 NA non-coding upstream 62849 10234819 ~ 10241509 (-)
G112651 NA non-coding upstream 181735 10353705 ~ 10353904 (-)
G112689 NA non-coding upstream 273679 10445649 ~ 10445952 (-)
G112690 NA non-coding upstream 276429 10448399 ~ 10448613 (-)
LOC113542827 slc25a53 other downstream 184897 9965785 ~ 9973795 (-)
tmsb1 NA other downstream 194692 9959576 ~ 9964000 (-)
si:ch211-153b23.4 si:ch211-153b23.4,LOC108269373,LOC108440096,LOC107570153,LOC107663089,LOC107573953,LOC107661545,LOC107746322 other downstream 565367 9587335 ~ 9593325 (-)
fgf16 fgf16 other downstream 810758 9340373 ~ 9347934 (-)
LOC113542918 NA other downstream 1793110 8362373 ~ 8365582 (-)
LOC113542749 LOC108269078 other upstream 1086481 11258451 ~ 11325468 (-)
G113398 NA other upstream 1187168 11359138 ~ 11359579 (-)
G113516 NA other upstream 1440003 11611973 ~ 11612569 (-)
G113674 NA other upstream 1646908 11818878 ~ 11858016 (-)
LOC117597634 LOC101884462,LOC101885893 other upstream 1907554 12079524 ~ 12112216 (-)

Expression


Co-expression Network