pcdh20 (LOC108268391)


Basic Information

Item Value
gene id pcdh20
gene name LOC108268391
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 8624773 ~ 8630049 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940703.2
CTCAGAAATCCTAGTCACACTCAAGTTTCATTCCACACTGCTAGCACCCACACGAAGCATGATCACCTGCGTCTCACGGAAATATGAACATGGCGTGTCTGTTACAGAAGGTGCTTCTCATGGCATCTGTCAGACAGATCATATGCCACACTCTGCTGACTCTTTCGACACTAGAGGAACGACCGGAAGGAATTAAGATAGGCACCCTAAGCACAGCCTACTCTCCTCCATACCAGCTGCTTGGGAGTTCGTATTTGAGAGTTAATGAAGAAACCGGGGATGTGTACACAACAGAGCAAATGATTGACCGGGAGACCCTGTGTCCATCACAGGATGGAGGGTACTGTACCATCTCAGCCGTTGCCCTAGTGGGCCCTGAAAAAGAACTGATGAAGATAACCATCATCGTGGAGGATATAAATGACAATGCTCCTTATTTTGAAACAAATGAAATTCGTTTAAGAATTCCAGAGGATGCAAGTGTCGGGACAAGGGTGCTGCTGGACGACAAGGCTCTGGACAAAGACATAGGCAGCAATGCAGAGATAAGGTATCATTTAGAAGGCGCTGAAGGATTCTTCAGTGTGGCACAGGACAGTTCTGCCCTTGAGCTGATTGTTGAAAGAGAGCTGGACCGTGAAACTCAAAACGAGCACTGCATGGTTCTTGCTGCTGTGGACAGTGGCTCTGTGCCTCTGAGTGCTATGGTGTCTTTTGTTGTTGCGGTGCTAGATGTAGACGATCAGTGCCCGCAGTTCAGCCCTGATAACCCTCACACTGTTTCGGTGCCAGGAGGAGCGACCCGGGGAACAACAGTGGCCCAGGTTCAAGCCATAGACCCAGACCTGGGCAGCAACAGTCAGATCACTTACTCCTTCAGTGTCCAGATCTCAGATCGGGCCAAGGAACTTTTCCACTTGGACAGAAACACAGGCAGGATCAGTATAGCTATGGATATGAGGTTAGACAGCCTGGAGGAACATGTGTTAAAAGTGGTTGCAAATAGCCCACCTTGCCCTGTTGAACAAACTCAGGTAACTGTATATCTGCAGCCAGTGTTGAGTCCAGAGCCGGCTGTCGAGATCAAGTATGTGGCACAGTATAGAAACCAGACTATAATATTACGGGAGAATGAGCCACCAACTCTCTTGGCTCTTTTGGAGCTGAGAGACATCTCAAGTGTCCAAAGAGTTCTGTCGTTAGAGGAAGACAGCTCAGCATTCACTTTGAAAGCACAAGCAGGCAACTATCTACTTTCAACCTCAAAACCACTAGATTTTGAGCTGTGTAGCAAATATCTTGTTACTGTTGTTATAAGTGAAGCCCAAGGCAAGCGTGTGCATGCAAGGAAAGAGATAAAAGTGGTGGTTGAAGATGTGAATGATAATACCCCACAGTTTGAGAAGACTTCCTATCAGGTGGAGATAGAGGAGAACAATAAGCCTGGCATTCCTTTAGTACAAGTCATTGCAAGTGATGCAGATAGCGAGCTCTATGGCAAAGTGTCATACAGGCTGATTCATAATACCCCTGCTATCTTTAGTATTGATGAAGTGACAGGTGTAGTGTCTGTTTTAAAACTGTTGGACAGAGAGCAACAGGGAGAATACATTCTCACAGTGCTGGCCAGGGACAATGGCTCTCCTCCATTAGAGGCCTTTTCCTCAGTGTCGATAAAGGTCCTCGATCAGAATGATAACCAGCCAACCTTTGTCACACCACgcttcatcttcttcatctctGAAGGTACTCCACACTTAGCCCAGGTTGGAAAGATTGGAATTGTGGATGCAGATGAAGGGGATAATGGAAAAGTGGTGGATGTACAAGTACTAGACAAGCATGTTCCCTTCGCCATGGACCTGTCCCAGTTGGCACTTCGCTGTACAGGTGAGGTGGACCGGGAGAAGCATGAGCATTATGAGCTGCTCCTGCTGGCTATAGATGGCGGCAGTCCTCAACGCTCCTCCACTGCATCTGTAACTGTTTTTGTGGAGGATGTAAATGATAACCAGCCCCAGGTGCTCCTGCCGAGCAGCAACCTCTCCTGCCTGACCATACCCCCCAACACCAGGGCTGGCAGCATCATCACCAAAATTTATGCTATTGACCGTGACTCGGGCATGAATTCAGATATTACTTACCACATTATAGCCAGGGAGCCAATCAATCCCAGCCCATTTCAGATCGATCCACACTCAGGGAACATCACGCTGGTGCAGCAGCTTGTGGGCAGAGACTACGGTATGCACCACCTCTTAATCAGAGTCAGTGATAGAGGGAAGCCTGCACCTCTTCAGGCCACTGTGTGGGTTAATGTACTGGTCAATGAGATTTCCAAGCAGTGCCACCTGACCACTGTTCCCCCATATTTCCCCGCAGCCTCAGAGCCCCCTCTGCCACCAAAACCTTATAACCTGACAGAGAGTTGTACAGAACTGCCTTGGCTCCTACTGCTCTGTGGTCTGGGTATGATGGTGTTCTCAGTATGTATGTTTCTGGGCACTGTCATAATTTGcatgaaacaaaaaaacttgACGCGAAAAAGAACACGTAAGAGAGATCACACAAAAGAACATGAActgaaacatttaaattaaaggACATATGTTTTCCTTTATTGTTACAATGTTGTATTATAAATAAGACATTGTCAATTTAATAATGATACACaacatattttcatgttaatgcactgtattatatttttacatgGTCCGTATTGTAAATTGAAAATCTCAAATACATTCAAGTAAAGGTGAAAGTAAACATACCCAGACATACAGGAATGTATCTACCAGGAACTCTACCAACAAACCACAACAGCCTAGTTAGTTATTATCTGTcattaaaacagtgaaaatatggttttaaaaaatgtttttttctaacaTGCAGCATCTCTTCAGATTTTAAACAGCTGTCAATGACATTATAGAGAAACAACCAGTCTTGTGAATGCAACTGAtgcttgaatgaatgaatgaatgaattttgacACAAACAGATGTTAGAGCATTTTGTTCCCAgaattgtttaaattttaagtCTAAAAGATCCAAAAAGGATAGTACTGTTCAGTACTTGGTTCCATGGGGTAAATCAATTGGtctagtgcaaaaaaaaaaaaaaaaattcagaggaTAATTATTAACACAAACAATAACCAGGATTAACCAGTGATTACAGGAGCAGTCTTCCATGGTGTAGGCACCTGTGAGGGCTGAATGCTATCGGCTAAGAGACCAGTCAGACAGCGAATTTGCTAATCCTCTAATGCCTGATTAGAACTCTCTCAAATTCCCAAAAATAATTGATGGAAGTCTCAGGTATTTGCAGCCACAAAGGGGTCtaatgtttctctttaaaaaaggtGCTGCTTTGGAGAAGACTGGGGGATGCTGAGAAATGAAGCTTCGTCTCAAGTCACTGTGTTCCTTGTCATTTGATCTCCTCTCTCACCGCATGTTGAAAGGCCATTGAATTGGGATATGTTCGGTATGCATATCTACAGACATGCTATTACCTTAAACTTTCATAAGCTTGCTCTCTTTCAGGATTGCTAAATAGTAAGCCAGTGGATATAAGTAGACATTTTTAACCCAACTATGCACATGAACCTATGTGCAGTTCAAGACTGCATTCCTGGTATTGCAGGGGTAGTGGTGTGAAAGCAAGTTACATCAATTCAGTATACTGATTGCATCTTTGCTTATCAAAGAATATTATGTTAGGCAGCAGAACTATTCTGCCCTGACCATTTAGTGTGGTTTAAAAAATTGTGACAGGTAGACAGGTACATTGTATGTAATCACTGATGTCTTTCTTTTCATGAGATATGAAGATATAATGTGTGAGAGTGCAGGATCAACTATTAAATATAGGGTTTAGTGGGTTTTAATTCACAaattttttgttgctttttttaatctggcaAACATCTCTGAAAACTCCTGCAACTTCATTAAATGTTTGTATCAGTAACATATTGTATGACAGGTTTCTGCAGTGGCCTGGGTTCCATCTTCCTAAGTTATCGCCCACACCTCTGCTCATGTCACAACTGGATCACCTCCCACTCCAGGAGCAACCACTCCTCATCCTAATCCTAATCTAGCCCAGACATTACAACACTCACACTCAACTGACTTCTGCCacaccttttctctctctctctctgtctctctctgtctctctgttcagttcagttcaacagtgctttattggcataaATGTTAGAAATCACAttattgccaaagcaaatagatTAAACTAAAGGTTATACAAAGAAAACACATACCATATCTTCATTTATGc
>XM_026940705.2
AATCCTAGTCACACTCAAGTTTCATTCCACACTGCTAGCACCCACACGAAGCATGATCACCTGCGTCTCACGGAAATATGAACATGGCGTGTCTGTTACAGGTGCTTCTCATGGCATCTGTCAGACAGATCATATGCCACACTCTGCTGACTCTTTCGACACTAGAGGAACGACCGGAAGGAATTAAGATAGGCACCCTAAGCACAGCCTACTCTCCTCCATACCAGCTGCTTGGGAGTTCGTATTTGAGAGTTAATGAAGAAACCGGGGATGTGTACACAACAGAGCAAATGATTGACCGGGAGACCCTGTGTCCATCACAGGATGGAGGGTACTGTACCATCTCAGCCGTTGCCCTAGTGGGCCCTGAAAAAGAACTGATGAAGATAACCATCATCGTGGAGGATATAAATGACAATGCTCCTTATTTTGAAACAAATGAAATTCGTTTAAGAATTCCAGAGGATGCAAGTGTCGGGACAAGGGTGCTGCTGGACGACAAGGCTCTGGACAAAGACATAGGCAGCAATGCAGAGATAAGGTATCATTTAGAAGGCGCTGAAGGATTCTTCAGTGTGGCACAGGACAGTTCTGCCCTTGAGCTGATTGTTGAAAGAGAGCTGGACCGTGAAACTCAAAACGAGCACTGCATGGTTCTTGCTGCTGTGGACAGTGGCTCTGTGCCTCTGAGTGCTATGGTGTCTTTTGTTGTTGCGGTGCTAGATGTAGACGATCAGTGCCCGCAGTTCAGCCCTGATAACCCTCACACTGTTTCGGTGCCAGGAGGAGCGACCCGGGGAACAACAGTGGCCCAGGTTCAAGCCATAGACCCAGACCTGGGCAGCAACAGTCAGATCACTTACTCCTTCAGTGTCCAGATCTCAGATCGGGCCAAGGAACTTTTCCACTTGGACAGAAACACAGGCAGGATCAGTATAGCTATGGATATGAGGTTAGACAGCCTGGAGGAACATGTGTTAAAAGTGGTTGCAAATAGCCCACCTTGCCCTGTTGAACAAACTCAGGTAACTGTATATCTGCAGCCAGTGTTGAGTCCAGAGCCGGCTGTCGAGATCAAGTATGTGGCACAGTATAGAAACCAGACTATAATATTACGGGAGAATGAGCCACCAACTCTCTTGGCTCTTTTGGAGCTGAGAGACATCTCAAGTGTCCAAAGAGTTCTGTCGTTAGAGGAAGACAGCTCAGCATTCACTTTGAAAGCACAAGCAGGCAACTATCTACTTTCAACCTCAAAACCACTAGATTTTGAGCTGTGTAGCAAATATCTTGTTACTGTTGTTATAAGTGAAGCCCAAGGCAAGCGTGTGCATGCAAGGAAAGAGATAAAAGTGGTGGTTGAAGATGTGAATGATAATACCCCACAGTTTGAGAAGACTTCCTATCAGGTGGAGATAGAGGAGAACAATAAGCCTGGCATTCCTTTAGTACAAGTCATTGCAAGTGATGCAGATAGCGAGCTCTATGGCAAAGTGTCATACAGGCTGATTCATAATACCCCTGCTATCTTTAGTATTGATGAAGTGACAGGTGTAGTGTCTGTTTTAAAACTGTTGGACAGAGAGCAACAGGGAGAATACATTCTCACAGTGCTGGCCAGGGACAATGGCTCTCCTCCATTAGAGGCCTTTTCCTCAGTGTCGATAAAGGTCCTCGATCAGAATGATAACCAGCCAACCTTTGTCACACCACgcttcatcttcttcatctctGAAGGTACTCCACACTTAGCCCAGGTTGGAAAGATTGGAATTGTGGATGCAGATGAAGGGGATAATGGAAAAGTGGTGGATGTACAAGTACTAGACAAGCATGTTCCCTTCGCCATGGACCTGTCCCAGTTGGCACTTCGCTGTACAGGTGAGGTGGACCGGGAGAAGCATGAGCATTATGAGCTGCTCCTGCTGGCTATAGATGGCGGCAGTCCTCAACGCTCCTCCACTGCATCTGTAACTGTTTTTGTGGAGGATGTAAATGATAACCAGCCCCAGGTGCTCCTGCCGAGCAGCAACCTCTCCTGCCTGACCATACCCCCCAACACCAGGGCTGGCAGCATCATCACCAAAATTTATGCTATTGACCGTGACTCGGGCATGAATTCAGATATTACTTACCACATTATAGCCAGGGAGCCAATCAATCCCAGCCCATTTCAGATCGATCCACACTCAGGGAACATCACGCTGGTGCAGCAGCTTGTGGGCAGAGACTACGGTATGCACCACCTCTTAATCAGAGTCAGTGATAGAGGGAAGCCTGCACCTCTTCAGGCCACTGTGTGGGTTAATGTACTGGTCAATGAGATTTCCAAGCAGTGCCACCTGACCACTGTTCCCCCATATTTCCCCGCAGCCTCAGAGCCCCCTCTGCCACCAAAACCTTATAACCTGACAGAGAGTTGTACAGAACTGCCTTGGCTCCTACTGCTCTGTGGTCTGGGTATGATGGTGTTCTCAGTATGTATGTTTCTGGGCACTGTCATAATTTGcatgaaacaaaaaaacttgACGCGAAAAAGAACACGTAAGAGAGATCACACAAAAGAACATGAActgaaacatttaaattaaaggACATATGTTTTCCTTTATTGTTACAATGTTGTATTATAAATAAGACATTGTCAATTTAATAATGATACACaacatattttcatgttaatgcactgtattatatttttacatgGTCCGTATTGTAAATTGAAAATCTCAAATACATTCAAGTAAAGGTGAAAGTAAACATACCCAGACATACAGGAATGTATCTACCAGGAACTCTACCAACAAACCACAACAGCCTAGTTAGTTATTATCTGTcattaaaacagtgaaaatatggttttaaaaaatgtttttttctaacaTGCAGCATCTCTTCAGATTTTAAACAGCTGTCAATGACATTATAGAGAAACAACCAGTCTTGTGAATGCAACTGAtgcttgaatgaatgaatgaatgaattttgacACAAACAGATGTTAGAGCATTTTGTTCCCAgaattgtttaaattttaagtCTAAAAGATCCAAAAAGGATAGTACTGTTCAGTACTTGGTTCCATGGGGTAAATCAATTGGtctagtgcaaaaaaaaaaaaaaaaattcagaggaTAATTATTAACACAAACAATAACCAGGATTAACCAGTGATTACAGGAGCAGTCTTCCATGGTGTAGGCACCTGTGAGGGCTGAATGCTATCGGCTAAGAGACCAGTCAGACAGCGAATTTGCTAATCCTCTAATGCCTGATTAGAACTCTCTCAAATTCCCAAAAATAATTGATGGAAGTCTCAGGTATTTGCAGCCACAAAGGGGTCtaatgtttctctttaaaaaaggtGCTGCTTTGGAGAAGACTGGGGGATGCTGAGAAATGAAGCTTCGTCTCAAGTCACTGTGTTCCTTGTCATTTGATCTCCTCTCTCACCGCATGTTGAAAGGCCATTGAATTGGGATATGTTCGGTATGCATATCTACAGACATGCTATTACCTTAAACTTTCATAAGCTTGCTCTCTTTCAGGATTGCTAAATAGTAAGCCAGTGGATATAAGTAGACATTTTTAACCCAACTATGCACATGAACCTATGTGCAGTTCAAGACTGCATTCCTGGTATTGCAGGGGTAGTGGTGTGAAAGCAAGTTACATCAATTCAGTATACTGATTGCATCTTTGCTTATCAAAGAATATTATGTTAGGCAGCAGAACTATTCTGCCCTGACCATTTAGTGTGGTTTAAAAAATTGTGACAGGTAGACAGGTACATTGTATGTAATCACTGATGTCTTTCTTTTCATGAGATATGAAGATATAATGTGTGAGAGTGCAGGATCAACTATTAAATATAGGGTTTAGTGGGTTTTAATTCACAaattttttgttgctttttttaatctggcaAACATCTCTGAAAACTCCTGCAACTTCATTAAATGTTTGTATCAGTAACATATTGTATGACAGGTTTCTGCAGTGGCCTGGGTTCCATCTTCCTAAGTTATCGCCCACACCTCTGCTCATGTCACAACTGGATCACCTCCCACTCCAGGAGCAACCACTCCTCATCCTAATCCTAATCTAGCCCAGACATTACAACACTCACACTCAACTGACTTCTGCCacaccttttctctctctctctctgtctctctctgtctctctgttcagttcagttcaacagtgctttattggcataaATGTTAGAAATCACAttattgccaaagcaaatagatTAAACTAAAGGTTATACAAAGAAAACACATACCATATCTTCATTTATGc

Function

NR:

description
protocadherin-20-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940703.2 True 4317 mRNA 0.43 2 8624773 8630049
XM_026940705.2 False 4308 mRNA 0.43 2 8624773 8630043

Neighbor

gene id symbol gene type direction distance location
plp1a plp1,LOC105925114,LOC108242072,LOC107689137 coding downstream 12706 8602119 ~ 8612067 (-)
fut11 fut11,LOC107733430,LOC107663104,LOC107689135,LOC107710942,LOC107581245 coding downstream 30528 8589340 ~ 8594245 (-)
cetn2 cetn2,LOC108436166,LOC107663123,LOC107710936 coding downstream 67497 8554566 ~ 8557276 (-)
fhdc2 LOC108268667 coding downstream 121739 8486836 ~ 8503034 (-)
slbp slbp coding downstream 145819 8473671 ~ 8478954 (-)
nlgn3a nlgn3,nlgn3a,LOC107748936,LOC107689138,LOC107663109 coding upstream 19415 8649464 ~ 8804731 (-)
thoc2 thoc2,LOC107733416,LOC107741598 coding upstream 490985 9121034 ~ 9201135 (-)
LOC113542799 uprt,LOC108440089 coding upstream 780799 9410848 ~ 9424114 (-)
irg1l irg1l,LOC108269388,LOC108440101,LOC107570155,LOC107746176,LOC107573956,LOC107663091,LOC107661550,LOC107746319 coding upstream 940065 9570114 ~ 9575347 (-)
zgc:174917 LOC108268429,LOC108440103 coding upstream 968738 9598787 ~ 9601926 (-)
G111559 NA non-coding downstream 7831 8616706 ~ 8616942 (-)
G111548 NA non-coding downstream 67067 8557345 ~ 8557706 (-)
G111532 NA non-coding downstream 138452 8486090 ~ 8486321 (-)
LOC113542922 NA non-coding downstream 141096 8481198 ~ 8483677 (-)
LOC113542737 NA non-coding upstream 313434 8943483 ~ 9003847 (-)
G111885 gria3a,gria3b,LOC103044872,LOC107568987,LOC107663111,LOC107741597,LOC107566009 non-coding upstream 473095 9103144 ~ 9109888 (-)
G111893 NA non-coding upstream 563852 9193901 ~ 9259335 (-)
G111896 NA non-coding upstream 609379 9239428 ~ 9251750 (-)
G111911 NA non-coding upstream 625673 9255722 ~ 9257981 (-)
LOC113542918 NA other downstream 259191 8362373 ~ 8365582 (-)
LOC113542919 NA other downstream 266827 8356254 ~ 8357946 (-)
canx canx,LOC107733432,LOC107667459 other downstream 686299 7911338 ~ 7938474 (-)
G110290 NA other downstream 2796215 5826230 ~ 5828558 (-)
G110204 NA other downstream 2826837 5793847 ~ 5797936 (-)
fgf16 fgf16 other upstream 710324 9340373 ~ 9347934 (-)
si:ch211-153b23.4 si:ch211-153b23.4,LOC108269373,LOC108440096,LOC107570153,LOC107663089,LOC107573953,LOC107661545,LOC107746322 other upstream 957286 9587335 ~ 9593325 (-)
tmsb1 NA other upstream 1329527 9959576 ~ 9964000 (-)
LOC113542827 slc25a53 other upstream 1335736 9965785 ~ 9973795 (-)
LOC113542749 LOC108269078 other upstream 2628402 11258451 ~ 11325468 (-)

Expression


Co-expression Network