atoh8 (atoh8,LOC107677004,LOC107753212,LOC107571829)


Basic Information

Item Value
gene id atoh8
gene name atoh8,LOC107677004,LOC107753212,LOC107571829
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 12527491 ~ 12549293 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940794.2
TTGGGCAGTCTCCTCCTGCAGGCGGGGTAACGGGGTAACGCCAGCAGGGGCTTTTATGTAAATGCGGATGAAGAATGCTGGCAATGCCTGCTTGACTTCAGACGGGTCTCAGAAAGCACGGAAAACAGCGGCGTGCTCTTGCTACAACATAACATTGATTTCTTTCTGACTTATGCCAGTACTGGTGGAATAACTAGTAACAGCTGTAGGAAATTTACGAGATAGTTTGTTGTTATACGCAGACTGTAGGTCATCGGAAATGAAGAACAGTCATGTAAACATGGATCGGTGTAATCCAACAGATGGATATAAGAAGTTTAAACGAAAGGTTCGAGATTCTGTTAAACGTGAGGAAAAGACTTCACATGACTCTAAAAAAAGCCTCGACTCAGTGGGACCTTTGCTGGGGGAGGTTTATGGAAAAACACGTGAAAAAAAGTTACAGCGTTTTGATCCAGCTGGAGAATACATACGACAACCGGACATTTTAAATACTGCTCTTGATATGAAAATGTTCTCTTTGCCATCACTACCTAGGAATGAAACGGAAACACCACTATGGTCGATTTCAGAGATACCAGTTAAAAACAGAAACGACACAACATCCCTACAAGTTTCAGCCTTTGATAATCAGCAAGCGTTTCCAACAAATTATCCTCCGCAGTCGCGTATTCTGTTTTGCAAACGCTCTGAAAGGTCTCTCTGCTCAACCTCTCGTGGTTCATACCTCCATAACAATGTTGACCCTACCGACTCACTTAGGAAACGATCGGAAGAGCAGTCTGCTGGCGTCGTCACAGAGATCAAAGCAATTCAGCAGACACGAAGACTCCTGGCAAATGCTAGAGAGAGGACCAGAGTGCATACGATCAGTGCAGCATTTGAGGCTCTGCGAAAGCAGGTGCCCTGCTACTCCTATGGACAGAAGCTCTCCAAGCTGGCTATATTAAGAATTGCTTGCAACTATATCCTGTCACTGGCTCAACTTGTAGATCTGGACTATACACCAGATCATAGCAACATGAGCTTCAGGGAGTGTGTTGAGCAGTGCACCAGAACCCTGCAGGCTGAGGGTCGCTCCAAGAAAAGAAAGGTGTTACATTCCCCTTGAGGTGTCTAGGTCTAAAGCGGAGTAACCTGGGAGGATACGTGATGGATGATGGAAGGGAAGGACACAGACAACAGCAGTATTGTTAAACtaatgctttacattttctttccaCACTTACATGTTACAATAGAGGTAATGAATGGATCAATACatcaataaaaaagacaaaataagtgGCAATGGTAACATCGTAAAATCACCCAGCACAAAGGAAGCAGTGGTAATATTATAAGTAGGTAATAAAAGGCCAACTGGACAACAGTACATGAAGTGAGTGGAGGAgtaaagtctaaataggaaaaGTTGAGTAAGATAATAGTACTTGTAATTAGGGTAGAGCTACCCTGAAATGCTGTTAGACCCAACCAAGTAGCAAAGGTGGACTACAGACGGtggcaaagaaatgaaaagaaaataacacCTACCCTGCCTAAAGAGCCTGCCTAACCAAAATTACCACATGTGGCACTCGCCCCCGACCTGGTGTGTCTATACAGAGTCATACTACTGAGGAGAAATATAAAGGCGTGCTCAAACTAACGTGAAATGCCATTGTCCATACATGCCATTGGAGGGTGAGAGCAAGAGAGctggggagaaagagaaaaaagtgaaagcagCAAAGTGAGCCTAAAACACACTGCGTTAGcttgacattttcacaaagtgtGTGCAGACAATATGCATAAACTCTACCTTATGTCTACCTTACCTAGGTTCCTCTACCTTATGTGCAATACTCAATAGGCAAGACCTTTTTGTACATCTTGGAGGTATCTGTCTTTCAGAGCTGGTAATAGAGCTGGTTATTTGCTCAGTGATTCATTCAGTTTCTGCCACCTGAAGAGTAGAGGGCCTGTGGCTTCACTTATTCTTATACCTGGGTGGGTTTCCTGCAAAGGAGCACTATTTGTGGTGAACCACCGAATCCACTTTATACAGTCACAGCTCCAAGTGATTAACAAGTCAGGATGCAGAATTCGTGCTTGTGAAGACAATGGCTAAGTTCTCTGGAAGGCGGGGCCGAGCACAAGTTTTGTGCCTGATGCATTGATGTGTTGATCACCTTAGAGAAGCAGAGAACAAAAGTTTTTACACTGCCACAGTGCAAAGACTATATTGAGAATGTTAAAGTAGGCTTTGACCCATCTGTTGAATTGCATCTGGCAGGGGTGCTCACACTTCTATGGCAAGAGATCaactttttcatattattattatggtaagATCCACCATGTAAAATATGCACGTACACTCTAAATTTGGAGtttgagaaattattttgagagatttgtttttattcaaataatgttATGCAATCAATTTTCATTGAAACAAATCGCAAAAGTAATATACAGCATCAGGGGCATGGTTGAGCTTCAGTGGTGGATGGTGAGGAGGCAGGTTTATGACTCTCACCCTTGTCTTATTACctccagtctacttatttgtgtctctttgtgcatTCAGTAACTGCCGTAaccagagagacagtgtgtgtgatatagtTGGCAGAGCTTGCGAGACACCCACACACCATGAagcgtgaacttgaacttgacgGCGTGAAAACTGCGAGTCCGGGACAGACCTGTTTCGGGTTCTACATTTCCCTATTAAGAAGATCGACCATTGGTTGTCTTGCAATCGACTGGCCGATCACGATTGAAGTAATGAGCACCCCTGGCATCTGGGTACCCTGGCGTGTGTGGCTTGGATTGTGAGCTGGTCAGCCTGGGCCACATGCATGGCATCATTGGTGGTCTCACCAGATGAAGCACTATGCCCCACCATATGCTGCTCAAGCACTGAATGCAGCCGTACAGATGACACTCTGATGCGGTCTTCATTGACTCATGCATCGTACTAATAATTAGTTAATCAGCTAGGGAACTGATTGAAACTATACTTGTGGCAGTAAGATATAATCTGGTTTTCAGCTGGTGACAGGTGTGGTTAGTGCAAATTCATGCTGCTGGACACATCCAAATCAACTCTGCAAAACTTACCTTATGTGCCATGCTCACTCACATGGTCAAGGAAGCCCTAGATAGTACAGATTTCAGAAACTAGTAACCAGCACAATCGGGCAAAATGGCCATGCAGCATTGCTCACTAGGTAACAACTACATTGGACCAGTGGGTCCTGAGGACAGTGTAGCAGGGATTCAAACTTCAGTTCTGCCAGTGACCTCCAACCTTTTCAGGGCTCCAGGCCTTGCTGATTTCCAACCCCACTGAATTgaccaattttttaaaaaagagattcattctttctcactcactctttaCTCAGCAGCAGTTTGTGATCACCATAACAGTGAGGAAATGGTCACAGGTGACTGCTGGGCCCTACAGCACTGTTTTGAGTTGACAGACTGGGAGGTACTCTGTAGTCCACACAGTGATGACATCAATGTTCTAACAGACCGTGTAACAGACTGTATCAACTTCTGTGTGGACAGCATTACACCAACAAAGATTGTTCACTGTTTCCTGAATAACAATCCCTGGGACATCAGACACATTAAGACCCTtttgaaaaggaagaagacagCCTTTCTTCAGGGGAACAGGGAGAAGGTGAAACAGGCTTAGAAAGAACTGAAGGTCAAGATCAGGAAAGGAAAGGTCACTgcagaataataatacaaaGAATGTGTAGAGGGGCATGAAGACCATCACAGGCTATAAGCAGATGCTGGGACCTGAGATAGAGTGCATTCTGGAAAGGGCCAATGAGCTGCACCAGttcaacagaaacagaaatatacCTGACCCCTGTTTCTATCAATGGTGTGAATGTGGAGCTGTGCTATGGACAATTTTGTACTTTTGCACTGGCCTGCACTCTTCACCATACTCACTGCCAGAAAACTGTAACTTGTAATCCAGTAAACTGTAACAATTTGCAAAATACAACAAACACTGCTGTTTTGTAGTGATTTCTGTTACTTCTGCTTTTGTAATGGTTGGCAAGAAATTTTCCTCCTGGATGAataaagtcaagtcaagtcaa
>XM_026940795.2
TTTGGGCAGTCTCCTCCTGCAGGCGGGGTAACGGGGTAACGCCAGCAGGGGCTTTTATGTAAATGCGGATGAAGAATGCTGGCAATGCCTGCTTGACTTCAGACGGGTCTCAGAAAGCACGGAAAACAGCGGCGTGCTCTTGCTACAACATAACATTGATTTCTTTCTGACTTATGCCAGTACTGGTGGAATAACTAGTAACAGCTGTAGGAAATTTACGAGATAGTTTGTTGTTATACGCAGACTGTAGGTCATCGGAAATGAAGAACAGTCATGTAAACATGGATCGGTGTAATCCAACAGATGGATATAAGAAGTTTAAACGAAAGGTTCGAGATTCTGTTAAACGTGAGGAAAAGACTTCACATGACTCTAAAAAAAGCCTCGACTCAGTGGGACCTTTGCTGGGGGAGGTTTATGGAAAAACACGTGAAAAAAAGTTACAGCGTTTTGATCCAGCTGGAGAATACATACGACAACCGGACATTTTAAATACTGCTCTTGATATGAAAATGTTCTCTTTGCCATCACTACCTAGGAATGAAACGGAAACACCACTATGGTCGATTTCAGAGATACCAGTTAAAAACAGAAACGACACAACATCCCTACAAGTTTCAGCCTTTGATAATCAGCAAGCGTTTCCAACAAATTATCCTCCGCAGTCGCGTATTCTGTTTTGCAAACGCTCTGAAAGGTCTCTCTGCTCAACCTCTCGTGGTTCATACCTCCATAACAATGTTGACCCTACCGACTCACTTAGGAAACGATCGGAAGAGCAGTCTGCTGGCGTCGTCACAGAGATCAAAGCAATTCAGCAGACACGAAGACTCCTGGCAAATGCTAGAGAGAGGACCAGAGTGCATACGATCAGTGCAGCATTTGAGGCTCTGCGAAAGCAGGTGCCCTGCTACTCCTATGGACAGAAGCTCTCCAAGCTGGCTATATTAAGAATTGCTTGCAACTATATCCTGTCACTGGCTCAACTTGTAGATCTGGACTATACACCAGATCATAGCAACATGAGCTTCAGGGAGTGTGTTGAGCAGTGCACCAGAACCCTGCAGGCTGAGGGTCGCTCCAAGAAAAGAAAGGAATAAAATGAAGACTCTGGATTAGAAGAATGAAGAACTTCACCACAGAATGATTAAGACACAGTGATTACACTGATGCATCCTTACACTTGAAGCAGGCATGTTAGAGAAAATGTCACAGAAACACAGATAATAgatataacaataatgataataataataattataataataatacaggaaCTGCAGACATCGAGATATAATACATTTAACACGGCAGTATActgtacagaaaaacacactttattatAATTCTGCACACTACAAATGATAAAAGATTATTGTAAAATGCCCATGTGATGTATGTTGATCTGATCATGCATTGcactttacaaatattttagttTGCTTGTAGGATTTAATTCACTCTTGAATTCAAAACTGAAGCCTGTAAAACTACATGGATAGGTTTGGTAACACATTCATAATatgcattattaatataattaaatgtttaatgacgCATTAAAGACTGCTTCCACCATAAATATGAAATAGTACTCCATAGCATTTAATTTTTCCCcctcaaaataaatattcaaaacatttctgcactga
>XM_034305621.1
GCCTCATTTATTTTGGGCAGTCTCCTCCTGCAGGCGGGGTAACGGGGTAACGCCAGCAGGGGCTTTTATGTAAATGCGGATGAAGAATGCTGGCAATGCCTGCTTGACTTCAGACGGGTCTCAGAAAGCACGGAAAACAGCGGCGTGCTCTTGCTACAACATAACATTGATTTCTTTCTGACTTATGCCAGTACTGGTGGAATAACTAGTAACAGCTGTAGGAAATTTACGAGATAGTTTGTTGTTATACGCAGACTGTAGGTCATCGGAAATGAAGAACAGTCATGTAAACATGGATCGGTGTAATCCAACAGATGGATATAAGAAGTTTAAACGAAAGGTTCGAGATTCTGTTAAACGTGAGGAAAAGACTTCACATGACTCTAAAAAAAGCCTCGACTCAGTGGGACCTTTGCTGGGGGAGGTTTATGGAAAAACACGTGAAAAAAAGTTACAGCGTTTTGATCCAGCTGGAGAATACATACGACAACCGGACATTTTAAATACTGCTCTTGATATGAAAATGTTCTCTTTGCCATCACTACCTAGGAATGAAACGGAAACACCACTATGGTCGATTTCAGAGATACCAGTTAAAAACAGAAACGACACAACATCCCTACAAGTTTCAGCCTTTGATAATCAGCAAGCGTTTCCAACAAATTATCCTCCGCAGTCGCGTATTCTGTTTTGCAAACGCTCTGAAAGGTCTCTCTGCTCAACCTCTCGTGGTTCATACCTCCATAACAATGTTGACCCTACCGACTCACTTAGGAAACGATCGGAAGAGCAGTCTGCTGGCGTCGTCACAGAGATCAAAGCAATTCAGCAGACACGAAGACTCCTGGCAAATGCTAGAGAGAGGACCAGAGTGCATACGATCAGTGCAGCATTTGAGGCTCTGCGAAAGCAGGTGCCCTGCTACTCCTATGGACAGAAGCTCTCCAAGCTGGCTATATTAAGAATTGCTTGCAACTATATCCTGTCACTGGCTCAACTTGTAGATCTGGACTATACACCAGATCATAGCAACATGAGCTTCAGGGAGTGTGTTGAGCAGTGCACCAGAACCCTGCAGGCTGAGGGTCGCTCCAAGAAAAGAAAGTCATTGGTCCTGACTTGTGGCCTCATCTCACAGGTCCTAGAGGTGTGTactataatacaaaaaatatttagcaaTTACATACAAGTTAATACCATTATTTCGTGCTTTCTGTCCCATTTTTGTGGTTCTGAAGGAACACTTTTGATTGCTTTTCTGTTGGAAAATCTTACAATGATCCAGTTAATGATCGAATACTCAGAGAATTAGTTAAATTTTGAACCACCCTGTTAACATGTGTAAAtacagttaaattaaattagttaAATTTTGAACCACCCTGTTAACATGTGTAAATGCATATGTCTCTTTTCCCAGACAGGTTTAGCACATTCACTCATTCTGGTCTTGGGTCAAACACATAGTCATATAATTGTCCTCATGATGTCTCTGGCAAGGACAGAGTTTCTACTGGAACAGCACTTTCTGTAGTAGTGTGACGGCCTGATAAAATTTTGTAGTAGTGTGGGTGACCTATTTCTCTTAAATGCCCTTTCTCTACCAGATTAAAGAGTCAACATCACATTTAtgatttcacatttcattttattcatttacccACAGTTATATTCCTGTTGCTATTTACTTCCATTTTACTTTTACTACCCGTAATCCACCGAAAAAAATCCAATGTCCAAGtgaaatggcttcctattcacttcTTACTTAGCTTACAATATAATGACACTGTACCCCCTACTTCTCTATGTACATGATGTAAATTCCACCACATATTTTTCcactacatatttttttatatatgtacttttttgttttataggtAATATTTTGCCACTTGTGCCTATCACTAGTCCAGATGTGTCCAACTGTTTCTGCCCAGCCCTCATTGGCCATAAAATATGGATATTGTGTTTTCAACACATTAACATctgttagtttgttttttaaatgcacatgcCAGATCTTACCACAAAATCATCTAGTCACTCTATGACAAATTATTTCCTATAAATTACCATTGTCAATGGATATATTTCCCTTTTCTTCTCCTCGCC

Function

symbol description
atoh8 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within animal organ morphogenesis; regulation of neural retina development; and regulation of skeletal muscle cell differentiation. Predicted to be located in cytoplasm and nuclear speck. Predicted to be active in nucleus. Is expressed in several structures, including nervous system; neural crest cell; optic cup; optic vesicle; and trunk. Orthologous to human ATOH8 (atonal bHLH transcription factor 8).

NR:

description
protein atonal homolog 8

GO:

id name namespace
GO:2001014 regulation of skeletal muscle cell differentiation biological_process
GO:0061074 regulation of neural retina development biological_process

KEGG:

id description
K09084 ATOH8; atonal protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940794.2 True 4130 mRNA 0.44 3 12532638 12549281
XM_026940795.2 False 1652 mRNA 0.40 3 12527491 12549282
XM_034305621.1 False 2118 mRNA 0.40 3 12535685 12549293

Neighbor

gene id symbol gene type direction distance location
btk btk,LOC107554824 coding downstream 34692 12437839 ~ 12492799 (-)
LOC117597734 NA coding downstream 217328 12298166 ~ 12310163 (-)
hdac3 hdac3 coding downstream 464354 12025781 ~ 12063137 (-)
LOC113542750 LOC108268434,LOC108436714 coding downstream 983767 11481891 ~ 11543724 (-)
LOC113542810 zc4h2,LOC108269407,LOC108436709,LOC103036162 coding downstream 1128595 11388502 ~ 11398896 (-)
spdl1 spdl1 coding upstream 32163 12581456 ~ 12662949 (-)
hspa9 hspa9,LOC106604950 coding upstream 312357 12861650 ~ 12904853 (-)
LOC113529411 hnrnpa0b,LOC108269291,LOC107593199,LOC107740138,LOC107680986,LOC107554845 coding upstream 513045 13062338 ~ 13063432 (-)
elf1 elf4 coding upstream 1619542 14168835 ~ 14208465 (-)
trnae-uuc_1 NA coding upstream 1659623 14208916 ~ 14208987 (-)
G114103 NA non-coding downstream 4819 12518655 ~ 12522672 (-)
G114096 NA non-coding downstream 12869 12512829 ~ 12514622 (-)
G114095 NA non-coding downstream 15138 12509870 ~ 12512353 (-)
LOC117597691 NA non-coding downstream 23521 12501180 ~ 12503970 (-)
G114001 NA non-coding downstream 147998 12379277 ~ 12379493 (-)
G114169 NA non-coding upstream 15455 12564748 ~ 12564968 (-)
G114176 NA non-coding upstream 23054 12572347 ~ 12589625 (-)
G114183 NA non-coding upstream 115461 12664754 ~ 12665071 (-)
LOC117597685 LOC107701872 non-coding upstream 127675 12676968 ~ 12691407 (-)
G114216 NA non-coding upstream 146560 12695853 ~ 12696081 (-)
G114097 NA other downstream 9297 12516358 ~ 12518194 (-)
timm8a timm8a,LOC107742474,LOC107680336,LOC107593201 other downstream 22681 12500940 ~ 12504810 (-)
G114013 NA other downstream 103434 12423728 ~ 12424057 (-)
G113959 csnk1a1,LOC106604944 other downstream 158548 12321331 ~ 12368943 (-)
LOC113542864 LOC108427892,LOC108268827,LOC107740141,LOC107593202,LOC106612226,LOC107554835 other downstream 352586 12169629 ~ 12174905 (-)
G114215 NA other upstream 145478 12694771 ~ 12695509 (-)
fbxo38 fbxo38 other upstream 385264 12934557 ~ 13027955 (-)
G114460 NA other upstream 998219 13547512 ~ 13550775 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683,LOC107593230 other upstream 1292326 13841619 ~ 13915588 (-)
G114873 NA other upstream 1671023 14220316 ~ 14221855 (-)

Expression


Co-expression Network