LOC117597634 (LOC101884462,LOC101885893)


Basic Information

Item Value
gene id LOC117597634
gene name LOC101884462,LOC101885893
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 12079524 ~ 12112216 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305660.1
TGTCCCTTTACATCTCATCCAACCATTTCCATGTTTGCAACCGTAAAAACCTTTCCGCCAACCAATCAGCGTTCACACAATGCACAGCACAGCAGGGGCCCGTTTCAGAAAGGAGGTTAAGTGAGAACTCTGAGTATGTTAACCCTGAAATGTGGGAAACTCTGGATTTTCCGTTTCAGAAACGGAGGTATCTCAAACCCGAGAAAGCAGGAGTTTGACATAGACTTCCAAGAAATTcaaaaatttgaaaaatcatACCGGCACTGTCCAAATAACTGCAAAGAGCCAATGGAACCTGAATGCCAGTGTCTCTCCATTCCCCACACAATGaactgcACTGGTCAGGTTATTGAACATGGACTACGCAAACTAAACTTGGTTTGCAATAGTTCTGACACAGGAACACACGGCACATGTCGAATCCTTGAAAGACTAAAGAATCTTGTGACCACTGACCAAACACCCCAGTGTCTGTGTGGGACCCGAGTATCTCAGAACTGCATTTTGGATTACATCAGAAGAGTGTACCAAATTTCACAATCAAGAAAACTCTAGAGtaatcagaaaacagaaaaaatataattatttactacttaaactttatttaataatgtaggCATAGACAAACAACTAATTAAGGAGGTAGTTTCCTAGTTTTAGACCATGTGTTTGATTTCCAGTCAGTCCATATGTACAGTACTATGTGTTAAATTAGGAGATAAagtttttatgtacattttgtgTTCAGGAGGctgtacatttcatta
>XM_034305661.1
TACATCTCATCCAACCATTTCCATGTTTGCAACCGTAAAAACCTTTCCGCCAACCAATCAGCGTTCACACAATGCACAGCACAGCAGGGGCCCGTTTCAGAAAGGAGGTTAAGTGAGAACTCTGAGTATGTTAACCCTGAAATGTGGGAAACTCTGGATTTTCCGTTTCAGAAACGGAGGTATCTCAAACCCGAGAAAGCAGGATCATATGTGATGCTGCACATATCATCACAAATGTGGAGGCCAAGTGGCCCGGCTCTGTTCATGACTCACGAATGTATTGTGAGTCGACCCTGCGCAACAGGCTGGAATGTGGAGAGATTGATGGCTTTCTGCTGGGAGATAGGGGTTACCCATGCCAACCAACACTAATAACCCCTTACCCAGAACCTGAACCAGGCCCCCAGCAGCACTTCAATGTGGCACACTGCAGGACGAGAGCCTGGGTGGAGATGACCATAGGCCTGTTGAAAGCACGTTTTCAGTGCCTACGTCACCTCAGGGTAACCCATGAGAGGGCCTGCGACATTATTGCGGCATGTGTTGTTCTCCATAATATTGCCATAATTAGAGGGGAGCAACACCCTGCCCTACAAATACAAGACCCCGAGGAAGACCCCATCCACCCTGCAGATTTCCAGGATGGAAGGGTAGTCAGAGATATTATATGCTGCAATTTCTTCTCAGATTAATCAACAAGCAcccacaaaagaaacaaaatgaataaatacaaatcaCAACAATTTATTTGGTCTTCTTTATTTCCTTCAAATACAAAAGCAACTGTTAGATTTTCAAATTCTTCCAATAATTAATACAATTCACCTGTGACC
>XR_004578392.1
CATCCAACCATTTCCATGTTTGCAACCGTAAAAACCTTTCCGCCAACCAATCAGCGTTCACACAATGCACAGCACAGCAGGGGCCCGTTTCAGAAAGGAGGTTAAGTGAGAACTCTGAGTATGTTAACCCTGAAATGTGGGAAACTCTGGATTTTCCGTTTCAGAAACGGAGGTATCTCAAACCCGAGAAAGCAGGGTAAGTCAAGCCAGTTTCTAAAAGAGAGCTAACCTATACTCTGAGTCAGTTACCGTGGTAACTTACTCTGTGAACCTAACCTGGTTGGGAGCAGGTTTTCTTCGTTAAACCCGGAGTTTCTTTCGGTCTCCTCCCCTTTTTTAAAGTGGAAGCGGTGTTTAAATACCTCATTCATTCTTTCGGTACATTCATTCAATTGCACATATTTCCGACTgtctaaaatgtgaaaatggcaTGTCGTTTTGTAGAGGATCCTGTAGATGAGGAGGCTGCATTAATTCGCAGCGAGTTACATTTACGTCGGGAGAGGATTTTGAGGCCCCGAGTGGATTGTTTTGTCATATCCTCATGAATTTTTATTTGAGCGGTACCGTTTTTCTAGACAGTCAATTGAATATATCCATAATCTCATCCATCCTTACATCAGAAACATCAGCCATCGTGGCCGTGCTCTTACATCCGAGCAGATGCTTTGTGTTGCTTTACGTTTCTTTGCAAACGGTAGTTTTCTGTATAACATCGGGGATGCAGAGCACATTAGTAAGGCCACTGTATGCAGAACAGTAAGGAAAGTGTGCCTCGCTCTCAAACGCTTTCTGCGAATTTTTGTGGTGTTTCCTGGGCACAAACCCCTGAGAGTCATCAAAGAGGAGTTTCACAGGATTGCAGATCATATGTGATGCTGCACATATCATCACAAATGTGGAGGCCAAGTGGCCCGGCTCTGTTCATGACTCACGAATGTATTGTGAGTCGACCCTGCGCAACAGGCTGGAATGTGGAGAGATTGATGGCTTTCTGCTGGGAGATAGGGGTTACCCATGCCAACCAACACTAATAACCCCTTACCCAGAACCTGAACCAGGCCCCCAGCAGCACTTCAATGTGGCACACTGCAGGACGAGAGCCTGGGTGGAGATGACCATAGGCCTGTTGAAAGCACGTTTTCAGTGCCTACGTCACCTCAGGGTAACCCATGAGAGGGCCTGCGACATTATTGCGGCATGTGTTGTTCTCCATAATATTGCCATAATTAGAGGGGAGCAACACCCTGCCCTACAAATACAAGACCCCGAGGAAGACCCCATCCACCCTGCAGATTTCCAGGATGGAAGGGTAGTCAGAGATATTATATGCTGCAATTTCTTCTCAGATTAATCAACAAGCAcccacaaaagaaacaaaatgaataaatacaaatcaCAACAATTTATTTGGTCTTCTTTATTTCCTTCAAATACAAAAGCAACTGTTAGATTTTCAAATTCTTCCAATAATTAATACAATTCACCTGTGAC

Function

NR:

description
putative nuclease HARBI1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305660.1 False 767 mRNA 0.39 6 12079524 12112216
XM_034305661.1 False 833 mRNA 0.46 3 12108843 12112208
XR_004578392.1 True 1494 misc_RNA 0.45 3 12108844 12112201

Neighbor

gene id symbol gene type direction distance location
hdac3 hdac3 coding downstream 16387 12025781 ~ 12063137 (-)
LOC113542750 LOC108268434,LOC108436714 coding downstream 535800 11481891 ~ 11543724 (-)
LOC113542810 zc4h2,LOC108269407,LOC108436709,LOC103036162 coding downstream 680628 11388502 ~ 11398896 (-)
asb12b asb12 coding downstream 708331 11368194 ~ 11371193 (-)
LOC113542731 NA coding downstream 980134 11091697 ~ 11099390 (-)
LOC117597734 NA coding upstream 185950 12298166 ~ 12310163 (-)
btk btk,LOC107554824 coding upstream 325623 12437839 ~ 12492799 (-)
atoh8 atoh8,LOC107677004,LOC107753212,LOC107571829 coding upstream 415275 12527491 ~ 12549293 (-)
spdl1 spdl1 coding upstream 469240 12581456 ~ 12662949 (-)
hspa9 hspa9,LOC106604950 coding upstream 749434 12861650 ~ 12904853 (-)
G113889 NA non-coding downstream 22171 12021998 ~ 12057353 (-)
G113893 NA non-coding downstream 61250 12018054 ~ 12018274 (-)
G113756 NA non-coding downstream 72029 12007293 ~ 12007495 (-)
G113715 NA non-coding downstream 112790 11966027 ~ 11966734 (-)
G113712 NA non-coding downstream 116782 11960139 ~ 11962742 (-)
G113954 NA non-coding upstream 69149 12181365 ~ 12183096 (-)
G113972 NA non-coding upstream 145999 12258215 ~ 12263170 (-)
G113979 NA non-coding upstream 166606 12278822 ~ 12283054 (-)
G113985 NA non-coding upstream 179776 12291992 ~ 12292464 (-)
G113961 NA non-coding upstream 265097 12377313 ~ 12377780 (-)
G113674 NA other downstream 221508 11818878 ~ 11858016 (-)
G113516 NA other downstream 466955 11611973 ~ 11612569 (-)
G113398 NA other downstream 719945 11359138 ~ 11359579 (-)
LOC113542749 LOC108269078 other downstream 754056 11258451 ~ 11325468 (-)
LOC113542827 slc25a53 other downstream 2105729 9965785 ~ 9973795 (-)
LOC113542864 LOC108427892,LOC108268827,LOC107740141,LOC107593202,LOC106612226,LOC107554835 other upstream 57413 12169629 ~ 12174905 (-)
G113959 csnk1a1,LOC106604944 other upstream 209115 12321331 ~ 12368943 (-)
G114013 NA other upstream 311512 12423728 ~ 12424057 (-)
timm8a timm8a,LOC107742474,LOC107680336,LOC107593201 other upstream 388724 12500940 ~ 12504810 (-)
G114097 NA other upstream 404142 12516358 ~ 12518194 (-)

Expression


Co-expression Network