LOC117597734


Basic Information

Item Value
gene id LOC117597734
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 12298166 ~ 12310163 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034306173.1
GTGTCCACGGATCCACACTTCGAAAATCTACCGGAAATAGCAGACCATCCGGGGTACCtttgggatactcatttcaGTATTACGATTTGGGACATTCTAATTATAAGCTCGGATACTGTTTAGCATCCGGATAGTAGGAGAATTAAgatacagtatcagtgttaCTGTGAGAGGATTGGCGATTCGTGCTTAGTTTATTAAGTTAATTAAGTTTATTTAGCGGTTGGTTAGTTCACTTTCCTTAAGTAAGCTGTATTTCGCGTGTATATTAAAAGAAGGGACTGCAGGATGACTTGGAAGCGTTCGTGGAGCTATTCGAGCGTGCCACAGCCACATGGGGATGGCTAGACTCACAGTAGCTGTCGCTACTGTTGGTGGGAGCCCAGCTCACGACCCAACAGCTTCTAGTCGGAGCCTGCTGAAGTACTCTGACCTGAAGCGGGCCATATTGCAATGGTTTCACTTGCTGTTTGCATTCACCTGCATACAACAGCTCCAAGACACCTGTCGAAGGTGGCTGCTGGCTGAGGAGCGCCACGCCGAGAATGTAGTCAACCTAGTGGTACTGGAGCAGTTCATCGCCAAGCTCCCGGAGGGGATGGAGgaatgggtccagtgccactgtctggCGTCGCTGGAAGAGGTGGTTCAGCTAGCTGAGGACCACTTGGCAGCATATCTGAGAACAGTCAGCTCCTCcctttctcgctctctcccctcctcctcACGTTTCCCTTGAGGATTTCCCCTTGGAACCGTCCCAAGACAAAACCCAAAGACACACCTTCGACCTAGTGAAAGTAATTGACAGTCAACAGGTTCAGCTCAACATTGCACTCCCCTGTTCCTACTTTGCGATTATTAAAGATACATAGATCATATTGAGTGACACAGGGCACTTAAACAGAAGAGGAGATGACCCAGTCGTTTGTCTCAAAGATCCATAGGGAATTGCTTTCCATGTGGCTCATCATAGTCCTGCGGCAGGCCATTAGGTCAAAAGAAAACACCGAACTGTCTAATGGACCATTTCTATTTGCCGGACATTTGTGGCGATGTTTGCCGGTGGTGTGCTGCATGTCAcgatgtcagctggtgaatccgccTACCTCTCCAAAACCGACATTGCACCCCTTGTACGGGGGCATCACTTTGTACTAGTCCTGTTGTACTACGGGACGTGATCCCCGTAGAAGCTGTGCATCTCTGCAACATCTCCTGCAGTACgagaggtcccacaagcctccaCGGGGTTCTCCCCATTTGAATTGCTATATAGGCGCAAGCCTTGCAGCATCTTGGATGTCATCAGAGAAAACTGAAAGGAGGGACCTTCCaagagtgaaaatgaaattcagtacattcttgacctgagagcaGAACTCCACACATCAGGACAATTAATGCAGGAGAATTTGCAGCAGTCTTCTGATATTTCATATAACTGCAATTATTTGTGAACTTAAAATGACAGTAAGCTGGCCAATTTCAATTAATTGTCTCAATACTCCCTCCATTTTACAAAGATTTGAGGACATGGAGGAGGCAAAAGGTACACAATTTGCAATATACACAAAATTATGTAtggaaactgatttttttttttgttaagattATGTCATCATGCACACCATTTTATTGGTAAAAGGCTAATTGGATAGAAACCA
>XM_034306174.1
CCACGGATCCACACTTCGAAAATCTACCGGAAATAGCAGACCATCCGGGAAGAAGGGACTGCAGGATGACTTGGAAGCGTTCGTGGAGCTATTCGAGCGTGCCACAGCCACATGGGGATGGCTAGACTCACAGTAGCTGTCGCTACTGTTGGTGGGAGCCCAGCTCACGACCCAACAGCTTCTAGTCGGAGCCTGCTGAAGTACTCTGACCTGAAGCGGGCCATATTGCAATGGTTTCACTTGCTGTTTGCATTCACCTGCATACAACAGCTCCAAGACACCTGTCGAAGGTGGCTGCTGGCTGAGGAGCGCCACGCCGAGAATGTAGTCAACCTAGTGGTACTGGAGCAGTTCATCGCCAAGCTCCCGGAGGGGATGGAGgaatgggtccagtgccactgtctggCGTCGCTGGAAGAGGTGGTTCAGCTAGCTGAGGACCACTTGGCAGCATATCTGAGAACAGTCAGCTCCTCcctttctcgctctctcccctcctcctcACGTTTCCCTTGAGGATTTCCCCTTGGAACCGTCCCAAGACAAAACCCAAAGACACACCTTCGACCTAGTGAAAGTAATTGACAGTCAACAGGTTCAGCTCAACATTGCACTCCCCTGTTCCTACTTTGCGATTATTAAAGATACATAGATCATATTGAGTGACACAGGGCACTTAAACAGAAGAGGAGATGACCCAGTCGTTTGTCTCAAAGATCCATAGGGAATTGCTTTCCATGTGGCTCATCATAGTCCTGCGGCAGGCCATTAGGTCAAAAGAAAACACCGAACTGTCTAATGGACCATTTCTATTTGCCGGACATTTGTGGCGATGTTTGCCGGTGGTGTGCTGCATGTCAcgatgtcagctggtgaatccgccTACCTCTCCAAAACCGACATTGCACCCCTTGTACGGGGGCATCACTTTGTACTAGTCCTGTTGTACTACGGGACGTGATCCCCGTAGAAGCTGTGCATCTCTGCAACATCTCCTGCAGTACgagaggtcccacaagcctccaCGGGGTTCTCCCCATTTGAATTGCTATATAGGCGCAAGCCTTGCAGCATCTTGGATGTCATCAGAGAAAACTGAAAGGAGGGACCTTCCaagagtgaaaatgaaattcagtacattcttgacctgagagcaGAACTCCACACATCAGGACAATTAATGCAGGAGAATTTGCAGCAGTCTTCTGATATTTCATATAACTGCAATTATTTGTGAACTTAAAATGACAGTAAGCTGGCCAATTTCAATTAATTGTCTCAATACTCCCTCCATTTTACAAAGATTTGAGGACATGGAGGAGGCAAAAGGTACACAATTTGCAATATACACAAAATTATGTAtggaaactgatttttttttttgttaagattATGTCATCATGCACACCATTTTATTGGTAAAAGGCTAATTGGATAGAAACCA

Function

GO: NA

KEGG:

id description
ko04360 Axon guidance

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034306173.1 True 1667 mRNA 0.46 2 12298166 12310163
XM_034306174.1 False 1444 mRNA 0.48 2 12298166 12310159

Neighbor

gene id symbol gene type direction distance location
hdac3 hdac3 coding downstream 235029 12025781 ~ 12063137 (-)
LOC113542750 LOC108268434,LOC108436714 coding downstream 754442 11481891 ~ 11543724 (-)
LOC113542810 zc4h2,LOC108269407,LOC108436709,LOC103036162 coding downstream 899270 11388502 ~ 11398896 (-)
asb12b asb12 coding downstream 926973 11368194 ~ 11371193 (-)
LOC113542731 NA coding downstream 1198776 11091697 ~ 11099390 (-)
btk btk,LOC107554824 coding upstream 127676 12437839 ~ 12492799 (-)
atoh8 atoh8,LOC107677004,LOC107753212,LOC107571829 coding upstream 217328 12527491 ~ 12549293 (-)
spdl1 spdl1 coding upstream 271293 12581456 ~ 12662949 (-)
hspa9 hspa9,LOC106604950 coding upstream 551487 12861650 ~ 12904853 (-)
LOC113529411 hnrnpa0b,LOC108269291,LOC107593199,LOC107740138,LOC107680986,LOC107554845 coding upstream 752175 13062338 ~ 13063432 (-)
G113985 NA non-coding downstream 5702 12291992 ~ 12292464 (-)
G113979 NA non-coding downstream 15112 12278822 ~ 12283054 (-)
G113972 NA non-coding downstream 34996 12258215 ~ 12263170 (-)
G113954 NA non-coding downstream 115070 12181365 ~ 12183096 (-)
G113889 NA non-coding downstream 240813 12021998 ~ 12057353 (-)
G113961 NA non-coding upstream 67150 12377313 ~ 12377780 (-)
G114001 NA non-coding upstream 69114 12379277 ~ 12379493 (-)
LOC117597691 NA non-coding upstream 191017 12501180 ~ 12503970 (-)
G114095 NA non-coding upstream 199707 12509870 ~ 12512353 (-)
G114096 NA non-coding upstream 202666 12512829 ~ 12514622 (-)
LOC113542864 LOC108427892,LOC108268827,LOC107740141,LOC107593202,LOC106612226,LOC107554835 other downstream 123261 12169629 ~ 12174905 (-)
LOC117597634 LOC101884462,LOC101885893 other downstream 185950 12079524 ~ 12112216 (-)
G113674 NA other downstream 440150 11818878 ~ 11858016 (-)
G113516 NA other downstream 685597 11611973 ~ 11612569 (-)
G113398 NA other downstream 938587 11359138 ~ 11359579 (-)
G113959 csnk1a1,LOC106604944 other upstream 11168 12321331 ~ 12368943 (-)
G114013 NA other upstream 113565 12423728 ~ 12424057 (-)
timm8a timm8a,LOC107742474,LOC107680336,LOC107593201 other upstream 190777 12500940 ~ 12504810 (-)
G114097 NA other upstream 206195 12516358 ~ 12518194 (-)
G114215 NA other upstream 384608 12694771 ~ 12695509 (-)

Expression


Co-expression Network