LOC113542930


Basic Information

Item Value
gene id LOC113542930
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 9481256 ~ 9487069 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404367.2
AACGAGCTCATCCAGTTAGCCTAGCCTGGTTTACGCATCTACACTAACATCCAAGCAAATTCTTCCAGCCAATGGGTGCAGAGTTCACACCAACCCGTTAAATGACGTACGAGGACGTATTCCGCTACTAACATCTCTGCAGCTCACTGCTACTGAACCGGCAGTGAtgagggaaggaaaaaaaaaaagtgccaataAGCCGTGTGTGGGCCCGTGTGAAAGACTGCGCCgcggtgtatgtgtgtgtAACCTTTGCCATAGCTTAagaaaacaagcttttcagCTGGATTCACCCCAAGGACATCTCTCAAAGattgatCCGCCAAAGTATGCATCGTGTATAAGCACTATAAAAGGGCCAGAGAGATGACTGAAAATCTTGGGAGGGTAAACCCAGAGGAAGACCATGACCACATGGACCCCACTGAGACCCAACAGGGACACACTTGGAACAATGCAACAGCCTTCCAGTTCTTAATGAGCATCCTCACATTCCGCATGATACCACTAATTTGAGAAATTTCCAGCACAAAGACATAATTAGACAAACTAATTAGACACAGACTTTGTTGCACAGAGAGCCTCCGCAGTTCAAGCTATCCGCCTACCTGCCGTGTGCTAAAATAAGACAGAGCCATCAAGAACATGTACGCTAATTCCCTTCGACAAATGCACTTTGGCATATGTGGAGAGGCTACATTGTGTCAACGCACCTAGGGGACTAACCCCCTCCCTTCCTGacacaaaaacaagaacataaataaaataggaaCATGTACATCAAATACAAGGCATAAAGTGAAACATATTTGTTTCATACGCCCATATGTAGACCCAAAGAAGATGCGAAAATAGCCATCTCAAAGGGAGGAATTAAATTGGAATCGATAGCTAAATACAAGTCAAGCATGGACATTTAAGTCTCTGGAGGATTCATTATTCATTGCTAACAGCCCTGGaaaggacaaaaaataaatgcctCAGAACAAAAAGGGTTGAACTGGAGAGCCACAATCCAGAGTCCAGGGAGAACAGGGCACACAGGTGAAGAAAATGtaattgatttaaaaagtgACGGGGAAAGCCACAGTCTCCGGAGGGATCTGGAGCTCATCAGCACGGAAGTGGCAGGGGAACATGGCTCTACGAATATTACAATAAAGCTTCAGTCAGTATTAAGTAATCTCACACAGGCATTACAGCTTggaaaattaaaaggaaaagagCTATAGAATGGACATGGATGAAATGAAATCATTAGTGCTTAAACGTGTTTTCATTTTGGATTTTCAAATCAATGCTCCCAATATGTTTGCATATTAGATCAACTATAACCAAATTCCTTATAATGTGGAAACGCTTCTTTCAGAATATATATGGATCAGGCTTTTGAACTCATTTGTGAAGCTCCAGCTACttaaattccttgcttacaaaggtctggataagcaactaacatgactgaatgccaacaacagttcatttttaatgttgaaGCAGTTCGATGTGGTTATATTTTGTGGcacttcatgttaccacttttgactagtgccatGGACCCTGAATAGATGAGATATTCTTTCTAAATAAACGCATACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404367.2 True 1599 lncRNA 0.42 3 9481256 9487069

Neighbor

gene id symbol gene type direction distance location
LOC113542799 uprt,LOC108440089 coding downstream 57142 9410848 ~ 9424114 (-)
thoc2 thoc2,LOC107733416,LOC107741598 coding downstream 280121 9121034 ~ 9201135 (-)
nlgn3a nlgn3,nlgn3a,LOC107748936,LOC107689138,LOC107663109 coding downstream 676525 8649464 ~ 8804731 (-)
pcdh20 LOC108268391 coding downstream 851207 8624773 ~ 8630049 (-)
plp1a plp1,LOC105925114,LOC108242072,LOC107689137 coding downstream 869189 8602119 ~ 8612067 (-)
irg1l irg1l,LOC108269388,LOC108440101,LOC107570155,LOC107746176,LOC107573956,LOC107663091,LOC107661550,LOC107746319 coding upstream 83045 9570114 ~ 9575347 (-)
zgc:174917 LOC108268429,LOC108440103 coding upstream 111718 9598787 ~ 9601926 (-)
si:ch211-153b23.7 LOC108269411 coding upstream 117556 9604625 ~ 9615161 (-)
znf711 znf711,LOC107684921,LOC107569605,LOC107746145 coding upstream 418889 9905958 ~ 9917165 (-)
zgc:66447 LOC108268886 coding upstream 431304 9918373 ~ 9946526 (-)
G112026 NA non-coding downstream 80677 9400354 ~ 9400579 (-)
G111939 NA non-coding downstream 142930 9337874 ~ 9338326 (-)
G111913 NA non-coding downstream 221527 9259474 ~ 9259729 (-)
G111893 NA non-coding downstream 221921 9193901 ~ 9259335 (-)
G112141 NA non-coding upstream 63743 9550812 ~ 9551052 (-)
G112144 NA non-coding upstream 65957 9553026 ~ 9553678 (-)
G112161 NA non-coding upstream 218868 9705937 ~ 9706232 (-)
G112454 NA non-coding upstream 477638 9964707 ~ 9965338 (-)
G112459 NA non-coding upstream 483308 9970377 ~ 9970649 (-)
fgf16 fgf16 other downstream 133322 9340373 ~ 9347934 (-)
LOC113542918 NA other downstream 1115674 8362373 ~ 8365582 (-)
LOC113542919 NA other downstream 1123310 8356254 ~ 8357946 (-)
canx canx,LOC107733432,LOC107667459 other downstream 1542782 7911338 ~ 7938474 (-)
G110290 NA other downstream 3652698 5826230 ~ 5828558 (-)
si:ch211-153b23.4 si:ch211-153b23.4,LOC108269373,LOC108440096,LOC107570153,LOC107663089,LOC107573953,LOC107661545,LOC107746322 other upstream 100266 9587335 ~ 9593325 (-)
tmsb1 NA other upstream 472507 9959576 ~ 9964000 (-)
LOC113542827 slc25a53 other upstream 478716 9965785 ~ 9973795 (-)
LOC113542749 LOC108269078 other upstream 1771382 11258451 ~ 11325468 (-)
G113398 NA other upstream 1872069 11359138 ~ 11359579 (-)

Expression


Co-expression Network