LOC113528719


Basic Information

Item Value
gene id LOC113528719
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 15007711 ~ 15016373 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578405.1
CAGTGAGAGGAATATACTGCTTATTTCTTTTCAAACTGAGTCGGTTCCACATGAATATTCCACATAACCTGCCAACCAATGAGTTGCAGAGCTTGTGGCTAGTTTGATGCTAGCATTGTTGAGTTGCACTCCATAAACATATTATGAACTGTCTGTTGCTGATCCTGCTAATTTAACTGGATTCCATGTTTGCGTCTCCTTGTTTTGGAGGGGTATTCCCACTGGAGAGTGGAAACACAacatacttttttctttatacttGAGTCAGTCTTCTTCATAATTCACTTTATATTGAATGGGTAGCCACAAATAATCATGCTACAAGACCTGTGCTCAAGCAGTCTGAATGTGTATGAAGAACCTCAGAAAACAGTCAGAATTATTCTCCAGATGAATCAACAACTTCGCAGCAGACAAGGCTCAGCTGAAATCAATGATCCAGGATCTTAGACTATGCAACTCAAGGATGTACTGCTCAGTGGCCAGTCATCTTTCTCATCCCTTATCAGAGGAGGCCTAGGATGCTATTTCTATGCCTGCTTCTGGGAGTTGTTCCAGGCTAATAATCATAGGTGGTTCTAGACCCTATCACTCATCTAATTCCACCTAAATTGTTCAGCCAATAATTCTCTAACTTAATAAATTTCCTTTAATATTGTAATCCTTTTTATAAGCATGAaagctgacaaaagcagcagtgcAGTAGTAAGTAATTTGCAAACTGTCCCCAGACTCCTCTCCTCCATTTTGTGATTACTTGGTTTAAACCAAAGCACCTGGCACAGAGGTTTCCAGAATCTAGGACATAGTGAGGGCATGACAGAAACATCACATATGAAGATACGGAGGAGAAAAACTCATCCaggtcattcttttttttctacttttactATTGTTGGAACCTGGTGGATTCCTCCCCAATCACATATGCTATCCAAAAGAGACGTTGGGATTTGAGCTGGGTAATCTTTGTGGGACTGACCCCCCAAGAATCTAGCAGTCCAGGAAACACTTATGAATGGAAGCGCCTCTAGCATTGCCTGATTCCTAGGATTTTTACttttcttcagtaactgctaaACAGCAGTAATCCCCCATCGACCCAACAGGTGCTAGCGATCACTTTAGATAACGGAGATGTCTTAATAGAGGTGACATAAGGGTAACAGGATTGACGATAGCAACAACACAGGATTCAGCTGTTTACAATGGCCCCTATGCGgTAAATACATATTTCCACAtcaaatcttttatttaaacagcTTTCAGTAATTGCTACAAAGACAGGAATCTGTCTCAGGCTACATGGTGGCATTCTTGTCCAGAGGTCAGCTCTTGACCTCCCCATGACCCCTGGCTAACCACAGAGAAATGACCAGACAAGCATCCCCATGACCTTACGACAAGAAAAACCGATTTCCCCATTTTCTGGTTTCCTCGTCTTCCAA
>XR_004578406.1
CTTAATTTCGCGCAACAACATTCATCAGTAATTATGTAGACacctttcattttttcttttcagaaagaaAGCATGAATCCTAGCTTTGATCCTGTATTTTTCATGATGTTGACCTATTATACAAGCTTTTATAAGCATGTCTATTgaggactggtttgagtatttcagaaatggctgttctcctgggattttcacacacagcagtctctagagtttacacagaatagtgtggAACACAACAAAACAGTCTTAATAGAGGTGACATAAGGGTAACAGGATTGACGATAGCAACAACACAGGATTCAGCTGTTTACAATGGCCCCTATGCGgTAAATACATATTTCCACAtcaaatcttttatttaaacagcTTTCAGTAATTGCTACAAAGACAGGAATCTGTCTCAGGCTACATGGTGGCATTCTTGTCCAGAGGTCAGCTCTTGACCTCCCCATGACCCCTGGCTAACCACAGAGAAATGACCAGACAAGCATCCCCATGACCTTACGACAAGAAAAACCGATTTCCCCATTTTCTGGTTTCCTCGTCTTCCAA

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578405.1 True 1448 lncRNA 0.42 4 15007711 15015826
XR_004578406.1 False 555 lncRNA 0.40 4 15007711 15016373

Neighbor

gene id symbol gene type direction distance location
sh3tc2 sh3tc2 coding downstream 75551 14917996 ~ 14932160 (-)
il12ba NA coding downstream 153453 14841180 ~ 14854258 (-)
rnf145a rnf145,rnf145a,LOC107723822,LOC107669103,LOC107664350,LOC107740095 coding downstream 184538 14786083 ~ 14823173 (-)
clint1a clint1,LOC108427862 coding downstream 386305 14600113 ~ 14621406 (-)
zbtb3 zbtb3 coding downstream 413052 14591624 ~ 14594659 (-)
pttg1 LOC108268450 coding upstream 23230 15039603 ~ 15042499 (-)
foxi3b LOC108269392,LOC108427851 coding upstream 34987 15051360 ~ 15053378 (-)
LOC113528773 wnt8-2,LOC108268465,LOC108427847,LOC103036102,LOC106604410,LOC107752032,LOC107664333,LOC107669112 coding upstream 53450 15069823 ~ 15071886 (-)
LOC113528772 LOC108268464,LOC108427846,LOC107669111,LOC107602558,LOC107743918,LOC107752029 coding upstream 55625 15071998 ~ 15076599 (-)
lonrf1 LOC108269139,LOC108427843 coding upstream 281980 15298353 ~ 15314460 (-)
G115331 NA non-coding downstream 203520 14803454 ~ 14804191 (-)
G115329 NA non-coding downstream 221693 14785329 ~ 14786018 (-)
G115325 NA non-coding downstream 259718 14745939 ~ 14747993 (-)
G115143 NA non-coding downstream 467403 14540108 ~ 14540308 (-)
G115100 NA non-coding downstream 533246 14468250 ~ 14474465 (-)
G115477 NA non-coding upstream 116824 15133197 ~ 15133435 (-)
G115553 NA non-coding upstream 302367 15318740 ~ 15318949 (-)
G115554 NA non-coding upstream 304647 15321020 ~ 15321301 (-)
G115620 zdhhc24,LOC107744556,LOC107752023 non-coding upstream 384194 15400567 ~ 15402679 (-)
G115675 NA non-coding upstream 485462 15501835 ~ 15538043 (-)
ebf1a ebf1,ebf1a,LOC105011268 other downstream 232218 14670189 ~ 14775493 (-)
G114873 NA other downstream 785856 14220316 ~ 14221855 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683,LOC107593230 other downstream 1092123 13841619 ~ 13915588 (-)
G114460 NA other downstream 1456936 13547512 ~ 13550775 (-)
fbxo38 fbxo38 other downstream 1979756 12934557 ~ 13027955 (-)
tmsb2 NA other upstream 64411 15080784 ~ 15082504 (-)
apln apln other upstream 500681 15517054 ~ 15540726 (-)
ndufa1 NA other upstream 711277 15727650 ~ 15729388 (-)
G115842 dlg3,LOC107751999 other upstream 834648 15851021 ~ 15852220 (-)
G116014 slc25a5,LOC104931197,LOC101464643,LOC102200398,LOC106515500,LOC103395576,LOC108430428 other upstream 1052362 16068735 ~ 16071362 (-)

Expression


Co-expression Network