LOC117597691


Basic Information

Item Value
gene id LOC117597691
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 12501180 ~ 12503970 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578438.1
ttgactggtTATTGGCCGGGTCTGCcttgtttccttgttatttcatgacaaggtaaggagataaaaggtctggagttgattccaagcgttgaatttgcatttgggaGCTGTACATGGGTACTCTCAAtgtgtggtccaaagaggtgtcagtgcaagtgaaagaggccatcattaggctgaaaaaacaaccaGACCTACAAGAGAgctagcagaaactttaggagtggccatatcaacaatttggcattcttaaaaagaaggaatgcactggcaagctcagcaacaccaaaaacTCTGTAAGACTATGGaggacaactaaagtggatgatcacagaattgtTTCTTTGTTGAAGAAAACCTCTACACAACATCTatccaagtcaagaacactcaggaggagaaaaaactgaaggcagaagaACATACAGACAAGCAGctactgaaggcagctgcagtaaaagccTGGCAAAGTATAtgaagggaggaaactcagcaatTGGTGatgtccagacttcagGCACCTGACTGTATGAGAGTGAATGACAGCCCACACGTACTGCCAGAGGAATGCCATAACACAGCCACACCTCTACTAGGAGACAGCCAGATaagaaaatttgtaaaaatgtatgGCTTATAACTGTACAGCTAGATCAATGCAACAACATAGCCACTTCTCAATCAGAAGTGAACCATTGTAGAAAAGCTTATATGGTCCACATCTGGGCTTTATGTGGATTGTTTATATGGCTCACTTCTGGCCCTTATATGGCCCACATGTGGCAAACACACTAAAATCCAGTGGGACCTCAGTTCTTAACTGAAACTGCGTCATCTTCACTAACCTAAATTTtgaccttttaaaataaaatttgtttttgaataGCCACATAGGACTGCTCTAATAAAATGGAATGTATTTGTGACAGGGAGTGGaaagtgtgtatataatattatatatatataatattggtGTAATTGAAAAGTTTAAATTATAATTCAGATTCCTTGGCCCTAAACCATGAAGTGATTTATAGACAAGTACTGGTACTTTAAATTctgcaaaattaaaataaattttaaaaactgctgcacatgatgtaactgaaaggccatccagagttactctgaaagcttacttctagctgcctgttgtcctagtacaagtactacTATCTTGTCAGAATTTAGTAGAAGGAAGTTACTAAGCATCCattgtctaatgtcctttacataTTCCTTTGCTGAagtatacaactgtgtgtcatcagcataactgtgaaagctaataccatgtttatgaatcaTTTTACCTAGAGATAACACatagagaaaaaagcagtgggcctaaaacagagccttgtggaacaccaaactttactatactatgcatagagaagtcagcATTTAcctctacaaactgataacgttcagtcaaataagacctgagccatgagagggctgttcccttaactACAACAACATTTTCTTGTCTATCAAGAAGAATAATATGATCAATGGTGTCAAGCtgaggtcaagcaacacaagctaggaaacacaaccctgatcagagggtTTTAGCGAGCACTCTCTcagtgctatgatgaggcctaaatcctgactgatagatttcatgaatgttatttctATTTGGGAATGCTATAACTTTTTACCTATAAACATGCATTACTACTGGATATGATCATATAATGTTTGTTAATCTCCTACAACCCCATCCCACCGTTGAGAGCCTATTGACTATGATTCTGCTAGCATTTTTACAGAGCTTTTGTACAGTATATGGGAGCTACCTCCTTATGTTAATGCCTCCTTTTATGTTAATGTTCTTCTAACATTTACAGGAAGAGTCATATAGgttcctttttttcttatttattgcGGTTCTCTTCATCAGTTTTTGAACATGCTGTAATTCTGACCTATCTAAATACAACGTGAGTATTTGTAATCTCTGTGGTTTTATACTTGTgtggtgttgttttttcct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578438.1 True 2008 lncRNA 0.38 3 12501180 12503970

Neighbor

gene id symbol gene type direction distance location
btk btk,LOC107554824 coding downstream 8381 12437839 ~ 12492799 (-)
LOC117597734 NA coding downstream 191017 12298166 ~ 12310163 (-)
hdac3 hdac3 coding downstream 438043 12025781 ~ 12063137 (-)
LOC113542750 LOC108268434,LOC108436714 coding downstream 957456 11481891 ~ 11543724 (-)
LOC113542810 zc4h2,LOC108269407,LOC108436709,LOC103036162 coding downstream 1102284 11388502 ~ 11398896 (-)
atoh8 atoh8,LOC107677004,LOC107753212,LOC107571829 coding upstream 23521 12527491 ~ 12549293 (-)
spdl1 spdl1 coding upstream 77486 12581456 ~ 12662949 (-)
hspa9 hspa9,LOC106604950 coding upstream 357680 12861650 ~ 12904853 (-)
LOC113529411 hnrnpa0b,LOC108269291,LOC107593199,LOC107740138,LOC107680986,LOC107554845 coding upstream 558368 13062338 ~ 13063432 (-)
elf1 elf4 coding upstream 1664865 14168835 ~ 14208465 (-)
G114001 NA non-coding downstream 121687 12379277 ~ 12379493 (-)
G113961 NA non-coding downstream 123400 12377313 ~ 12377780 (-)
G113985 NA non-coding downstream 208716 12291992 ~ 12292464 (-)
G113979 NA non-coding downstream 218126 12278822 ~ 12283054 (-)
G113972 NA non-coding downstream 238010 12258215 ~ 12263170 (-)
G114095 NA non-coding upstream 5900 12509870 ~ 12512353 (-)
G114096 NA non-coding upstream 8859 12512829 ~ 12514622 (-)
G114103 NA non-coding upstream 14685 12518655 ~ 12522672 (-)
G114169 NA non-coding upstream 60778 12564748 ~ 12564968 (-)
G114176 NA non-coding upstream 68377 12572347 ~ 12589625 (-)
G114013 NA other downstream 77123 12423728 ~ 12424057 (-)
G113959 csnk1a1,LOC106604944 other downstream 132237 12321331 ~ 12368943 (-)
LOC113542864 LOC108427892,LOC108268827,LOC107740141,LOC107593202,LOC106612226,LOC107554835 other downstream 326275 12169629 ~ 12174905 (-)
LOC117597634 LOC101884462,LOC101885893 other downstream 388964 12079524 ~ 12112216 (-)
G113674 NA other downstream 643164 11818878 ~ 11858016 (-)
G114097 NA other upstream 12388 12516358 ~ 12518194 (-)
G114215 NA other upstream 190801 12694771 ~ 12695509 (-)
fbxo38 fbxo38 other upstream 430587 12934557 ~ 13027955 (-)
G114460 NA other upstream 1043542 13547512 ~ 13550775 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683,LOC107593230 other upstream 1337649 13841619 ~ 13915588 (-)

Expression


Co-expression Network