G11277


Basic Information

Item Value
gene id G11277
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 20450329 ~ 20451325 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU13378
TTTGCAGCTGTAAGAGTATTTGATATCAGAAAAGCCTCCATTAAAAAGAACTTGCTCTATTTGCAGAAGATATAAAAACGGAAATGTGCATAGTTGCATACTGATGACAGAAAGGAAAACCCCATGGCTCCTCCACTAGCATTGAAACTTATGCCTATGCAGCCATTTAAAGCCATGGTGTTGGACATTCAGTGGTTTCCATGGAAACACAgcattggcttttttttttctttttttgcagtctATACATCATTCCCATGCAGGGCTTTGCTTCCCAAAGGCATCACAGAAAACAACCTTCATTAAATGGTAGAGCGAGTCTCACTTTGCACCTTCGATCTACTATAGGGACTGTCATGCAGTAAAGCTTCTGGGTAGCACAGATTGGCTGGGGCTTTTCCTGTATTTCAGGTTAATTCTACGAAATATGAaggcaagcaaaaaaaaagtagtatgAGGTACAATGTATGAATCACAGCCATGGTAAGTATTGGTAATAGCATTAGGTGGATGAATTTACACCTCAACCTTGggcagtggtgcagtgggtattGTAGCTGCCTCATAGCTCTAGGGTCCCTGATTTGAGCCTTGGGTTAATGTCTGTGCAGACTTTTgcctgttctccctgtgttcacatgagtttcctctgggttctctggtttcctcccactgtacAAAAACAGGCAGGTAGGCAGAGTGACTacactaaattgctcctaggtacAAATGAGTGTTTGaagatgtgtgtgcatggtgccctgtgatggcctggagtcccatctggggtgaaaTCTCCTGCCTCGCACACAGggtttctgggataggctccggatccgctgcaaccctgaccaggataaagccattactgaagatgaatgaatgtttagaCTTCCTTACCTAAGTCATATATTAAGCAAAGACCAGCcacaaaacattcaaaaacaaaCCTCCTTGATGAAATTTACAATACAAATCAGCAACGGCTGAAGTGTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU13378 True 997 lncRNA 0.36 1 20450329 20451325

Neighbor

gene id symbol gene type direction distance location
skap2 skap2 coding downstream 6471 20431272 ~ 20443858 (-)
LOC113542605 c1h7orf31 coding downstream 95473 20348353 ~ 20354856 (-)
osbpl3b osbpl3,osbpl3b,LOC108441521,LOC107678127,LOC107685532,LOC107550826 coding downstream 105406 20286373 ~ 20344923 (-)
gsdmeb NA coding downstream 172964 20262891 ~ 20277365 (-)
LOC113542553 NA coding downstream 223076 20219657 ~ 20227253 (-)
hoxa2b hoxa2 coding upstream 2112 20453437 ~ 20459304 (-)
hoxa9b LOC108267495 coding upstream 12615 20463940 ~ 20468241 (-)
hoxa10b hoxa10 coding upstream 17166 20468491 ~ 20473421 (-)
hoxa11b hoxa11 coding upstream 23282 20474607 ~ 20477025 (-)
hoxa13b hoxa13,hoxa13b,LOC107685614,LOC107743224,LOC107596755,LOC107744698 coding upstream 31659 20482984 ~ 20486294 (-)
G11243 NA non-coding downstream 37131 20412167 ~ 20413198 (-)
G11119 NA non-coding downstream 348494 20041655 ~ 20101835 (-)
G10956 NA non-coding downstream 435456 20014176 ~ 20014873 (-)
G10869 NA non-coding downstream 539409 19907099 ~ 19910920 (-)
LOC113542661 NA non-coding downstream 616460 19833668 ~ 19833869 (-)
G11349 NA non-coding upstream 71354 20522679 ~ 20523222 (-)
G11523 NA non-coding upstream 222926 20674251 ~ 20676846 (-)
G11545 NA non-coding upstream 345425 20796750 ~ 20799412 (-)
G11569 NA non-coding upstream 393940 20845265 ~ 20845481 (-)
LOC113542610 NA non-coding upstream 414480 20865805 ~ 20866886 (-)
G10832 LOC108267614 other downstream 626646 19816477 ~ 19823683 (-)
trnaq-cug_9 NA other downstream 703446 19746526 ~ 19746883 (-)
trnaq-uug NA other downstream 704389 19745650 ~ 19745940 (-)
LOC117597712 NA other downstream 747169 19702611 ~ 19703160 (-)
trnaq-cug_8 NA other downstream 750692 19699566 ~ 19699637 (-)
rxrbb rxrbb,LOC108267229,LOC108413045,LOC107596638,LOC107581542 other upstream 812252 21263577 ~ 21275341 (-)
aicda aicda other upstream 2235082 22686407 ~ 22691804 (-)
zgc:92606 zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC108266696,LOC107672985,LOC107598403 other upstream 2450026 22901351 ~ 22908140 (-)
LOC113542417 NA other upstream 2669147 23120472 ~ 23129313 (-)
cxcr3.2 LOC108266514 other upstream 2681601 23132926 ~ 23165584 (-)

Expression


Co-expression Network