G11523


Basic Information

Item Value
gene id G11523
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 20674251 ~ 20676846 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU13662
accTGGAGTACAATTTTAATAGGGATGACAATGAAACATTGTTTTCATTCTCTTTGAAAATATAGAACTGTGACAGGATTTCAAGTgtgatgtatttgtattttgggCTGTGTGAAAAACAGCACCTGTTACTATGTAATGTTCATACCAGGAATGTGATGATAAATTGGTATAACAGTAGAAATCTGCAGTTGTACTGATAACATGATGCTGTACCGGTAAGGATAATGACATTACAAAAAATGTCCCTTAAAACCGATTGATTTTTTTGAGCATGATATATCCTAGGCAAGGCAAAAATCAGAGGAAGtgatattcattatattttcaaTGAATTACTTAAGTTTAAGGGCATATCTGTTTTAAAACGTCTTTGGTAGTCTCCCTAGCCAAATAATTTAACACTTGCCTTGCTGCTGTGTgcttatgtttatttaatgtcaaCCTCCATGAAAATGGGAAGGAAACAGTGATATACTCCATGGTGATAAACAACATGATAGTAAGACATCAGTATTTTTGTATCAGTATTAACTAGCCTACAGCACACTTCCATTTACACTGTTAAACATCAAATTCCATCCATTTATGAAGATTACACAACCTGCCATTATGTACAATTTGTCCTTACAGTAGTAGTCCTTGTACAGAACACTCCTTTCAGTAATATATCGACTGGTTTTTGACTATATGACCTTGTCATATATCCATATAGGaaatttctaaattaaattCACATGAATGTTGATTATTATAATccttaaaaaaatccattagtGCAAAAATTATCCTATTCAGAACTGCCATGACAGCAGGGATCCACCTGCAAGTATGTTACTTGAAACTACATCATACATCCAAACCAGACTATAAAACAACCAACATCAAcatttagttacatttacattcatataTAAGCATATATGTAAATATCCTTCATACAAACAGTTACAAAAGCACTGAAACTTTAACATTTTAGATAATAAATAAGTGGCCCTTCATATCAGTAACAAATAAACAGCAGAACAACAGCCAGGCGTTGCATTAACATTTACCACAACAACAAGAGACATCAGAATGGAAAAGACTCCATAACAGGCAATTAACCCACTAGCAAACcacataaccacacacacacacacacacacacacacatatataaacacacacttagaAAATGGGCTCTTGTTAAAAAGGGTCTTCCTCTAGGGGTTGTACTTGGGACCCCTTTCTGAATGTATGCtaagtgtgctggtgtgtacaCTCTCAGAAGAAAAAGGGCACTAAACTGTACCCTTCCTTGTCACTgatgtggtagtgtgtgtagtgtacctttaaagctttaggCCTACTCTTAATTAGGTCCAATTATGCGCTTTAAATCTTTTATATCCACGTTTCTGGGTAAAATGAAAAGGCACCACCCCCACTGACAATGAAACTTACAGCAGAGATTTTTTCTGAatttagatataaataaatattccctTCTTCTCAGAGCTGATGGCATTTAGCTTGACTAAATAGGCTAACAGGTAATTAACTCCAATAACCCTAATTAacaaattatgttttaaattctTTGCATTGTGTGAGTTTAAGGTGGCTTTAATTGCTTTTATTAACCTCTAgtatagtttttttctttttctttcctcatttCGATTTGAGAGGTCTTCTGCggtcagtgtcagtgtctgtGGTGGATGTTAGGATGTTAGCATGGCTACTTGGCCACGGCTGTGTTGCTGTCGTAAAAGTTCTTGTTTGCGGGCAAAGTGGCTCGAACCTTGCGTTTTTCCTTGAAGCGGCCGGAGCGCGAGACGGAAAGGTTGCGGCTGAACGTGCCTTCGATTAAAGCAGGCTCGAGCTGTGACGCATCAACGCCATCGCTCGTGAAGCCGGAGTTTTTGCTGTCCGAGCTTTGATCTTGCTGAATCCCAGCGTCTTTAAGGATGTTGCTCAGCACCCTGCCGGTGAAGGCCTTCCACCAGGGAATCCTGTCCGCCATCGGAGTGTTCACTTCACCTTATATCACCAAACAGTGATTAGACATCCTGTAATACGTGCTTATTAGCAAACAGCTCAGCAACAAACAGTTAGAGGCTCACAGTATTTTACGAACTGCATAAATTTAAAGGCTACACAGAGGTTCCATGTAACTCTCTGCATCAGAGGGTTTCTCTTTCAAaaaaggttccatgtagaacaTCTTTATAAAACTAGACCTGTTAACCATCTAAAGatattttctaagagtgtatattTCTAAatagcaataataataataataataatgttggaTAATATTggttaatgaataataaagttGGATAAAGTTGTTACTAAGAGTGTAGATATAAAATTCCACTTACCAAAACCACAAAATTCAGGTAAATATTTGCAGCACTGTCAGAATTTGCCCCAGCACCAAtagttttcctgtttctttgaCTCCAGAACCTAAAACCAAATTTCTTCTTTCTTACATCAACACAATATTTTGTGTCTTACTGCACGCTACTCCAGACTCTTTATAGCTAAGAGACGATGATGTTAGACAAGCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU13662 True 2569 lncRNA 0.48 2 20674251 20676846

Neighbor

gene id symbol gene type direction distance location
cpvl cpvl,LOC107684544,LOC107745375,LOC107550833,LOC107743225,LOC107685540 coding downstream 47092 20619546 ~ 20627159 (-)
jazf1b jazf1,LOC108441515,LOC107684540,LOC107550831 coding downstream 125365 20531805 ~ 20548886 (-)
hibadhb hibadh,hibadhb,LOC108441516,LOC107685537,LOC107550829,LOC107744697,LOC107743154 coding downstream 168489 20496283 ~ 20505762 (-)
hoxa13b hoxa13,hoxa13b,LOC107685614,LOC107743224,LOC107596755,LOC107744698 coding downstream 187957 20482984 ~ 20486294 (-)
hoxa11b hoxa11 coding downstream 197226 20474607 ~ 20477025 (-)
fkbp14 fkbp14,LOC107550815,LOC107596753,LOC107685615,LOC107745381,LOC107743226 coding upstream 1944 20678790 ~ 20681134 (-)
colq colq coding upstream 21186 20698032 ~ 20713758 (-)
hacl1 hacl1,LOC107745383,LOC107684560,LOC107743162,LOC107685543 coding upstream 37616 20714462 ~ 20727216 (-)
LOC117598413 LOC108267376 coding upstream 50606 20727452 ~ 20729059 (-)
ankrd28b ankrd28,ankrd44,ankrd28b,LOC107685545,LOC107596646,LOC107745379,LOC107550837,LOC107684548 coding upstream 56580 20733426 ~ 20751548 (-)
G11349 NA non-coding downstream 151029 20522679 ~ 20523222 (-)
G11277 NA non-coding downstream 222926 20450329 ~ 20451325 (-)
G11243 NA non-coding downstream 261053 20412167 ~ 20413198 (-)
G11119 NA non-coding downstream 572416 20041655 ~ 20101835 (-)
G10956 NA non-coding downstream 659378 20014176 ~ 20014873 (-)
G11545 NA non-coding upstream 119904 20796750 ~ 20799412 (-)
G11569 NA non-coding upstream 168419 20845265 ~ 20845481 (-)
LOC113542610 NA non-coding upstream 188959 20865805 ~ 20866886 (-)
LOC117597063 NA non-coding upstream 193949 20870795 ~ 20879814 (-)
G11806 fhod3,LOC107743170,LOC107662660 non-coding upstream 561189 21238035 ~ 21239276 (-)
G10832 LOC108267614 other downstream 850568 19816477 ~ 19823683 (-)
trnaq-cug_9 NA other downstream 927368 19746526 ~ 19746883 (-)
trnaq-uug NA other downstream 928311 19745650 ~ 19745940 (-)
LOC117597712 NA other downstream 971091 19702611 ~ 19703160 (-)
trnaq-cug_8 NA other downstream 974614 19699566 ~ 19699637 (-)
rxrbb rxrbb,LOC108267229,LOC108413045,LOC107596638,LOC107581542 other upstream 586731 21263577 ~ 21275341 (-)
aicda aicda other upstream 2009561 22686407 ~ 22691804 (-)
zgc:92606 zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC108266696,LOC107672985,LOC107598403 other upstream 2224505 22901351 ~ 22908140 (-)
LOC113542417 NA other upstream 2443626 23120472 ~ 23129313 (-)
cxcr3.2 LOC108266514 other upstream 2456080 23132926 ~ 23165584 (-)

Expression


Co-expression Network