G11961


Basic Information

Item Value
gene id G11961
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 21475423 ~ 21523715 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU14196
AAATCTTTATTCACCAAATTTTGCACACAGAGAAATGAGGGGAAAACACAGTTTATGCAGCAGAAGATGCAGGCAGGCATATTTTGAGAGGAAACcatgaaagtttaaaaaaatttaaaaaaaacattcgaTGCATATTCTGTTTCCATCTCACATGTTGCTTCCGAAGAGAACGATCACAGAAGCTTAGCCACCGtaacatggacacacacacacgcccacacacacacacaaacacacattcagattCACACAAACGATTAGTCACTCCTCCTCAATGGCTGAAGTTAGGAGGATGAAATTTGACCGGCAAAGGTTTTACATTAGTTAATAGCAGATTATATGGCGGAATAATGATGGCATTTGAGATGATGACGtgtcctgctgaaaaaaaacagtaaatcgAGTGCGTTTGTGTTCAGAAAATGATAGCCAGTGCCAACATTAGCTGGAGAAGTCAAAGTGAGAAAAACATGCTCTTATGAGTAATATAAAAAGGGCATGTAAAGAGactaaacattttgtatttaatattaagtCCAGACGTTGGCTCAGGAGCAAAAGAGTGTCGATGTGCTGCTGCAGATGAAGAATGTGTTAAGCTTGAACAAGGTTGTTTCATTCAGTAGATGGAAGAAGTGCAATGTCATGATTATATTGTATGTAAGCATAAATACACTGTACGGTTTGTcgtatatttatgtgtgtgtgtgtgtgtgtgtgtgtgtatgggtgtgtgtgtgtgtatgtttgtgtatacaTTCACTATTCAGacctcttcatttttttcacatttatgttGCAGCctcatgctgatttttttttcacatcaatctacactccatacctcataatgacaaagcaaaaccagatttgtgataactatgcaaatttataaaaagaaaaaactgaaatatcacattgacaaaagtattcagaccctttgctatggTACTTGAAATTcagctcaggtgcatcccatttctctggatcataTTTGAGGTGTTGCTACACTTTGGAGTCTgcctgtggcaaattcaattgattggacTTGATTTGGAAATGCACAAACCTGTCTATATACGGTCTAACAGCTGAAGGGGGGGTGGATTGGGGCAAAAAggtaatttaaagcattttaacatAAGGCtgtgacataataaaatgtggggaaaaaaggaaggggtctgaatagtttctgaatgcactgtgtTTGCATCATGACACAAAAAGCGTTTAATTTGTAAGTGTAGCCCTCAAAGGTGCTTTTAAATGTCAGTTCAAAGTTGAAATAGTCAGATTGGATTTGGCCCGAACTTTTGAGAATAGCATTGTATGTGATCACAGATTAATGCCAGTGTTATACGTATTCCTTgatatttgtatgtgtatagATTTGTCATTTCCGACTAAGATTAATCTGCACTAGGCTTTGTGTGATACAACAGTATTATCATGCCTATACAATAGTACATTGCCATGATATCCAGTGACGTTTATCGTggattatattaccagacctgccaatcATTAGGCgttttgtgtaggagctccaCAAAAACATCGGAGTACGCTAGTGTGAGTTCTCACTGAAAAATACTCCAAAAGAGCATTCTTTTTCTTCCAAATACAATGGGAGCCACTCAACgcataaatctggaatgatgtgtgtaggtgttttgagCGCTCCAATATTAACAGGCACTTACTGGAAGCACACTTACCCCAATCTCTCAAGCTCTCGGCTCATGTGGTGCCCTCGCTTTCTATATATTTAACATCggtttactatatttattataatatggTCAAAACAGCACTTTTGGTATTCGGCTGATAGAGAGAAAAGGTTTTTTGACCTAAAAAGAATCAATAGGCCTACAAAGTGTCAAATCCAAGTGTCAAATCACTTTACAAATATTAatggtgataatgatgattAAATAcactggttgtttttttttttttttttttggactggtG
>TU14201
AAATCTTTATTCACCAAATTTTGCACACAGAGAAATGAGGGGAAAACACAGTTTATGCAGCAGAAGATGCAGGCAGGCATATTTTGAGAGGAAACcatgaaagtttaaaaaaatttaaaaaaaacattcgaTGCATATTCTGTTTCCATCTCACATGTTGCTTCCGAAGAGAACGATCACAGAAGCTTAGCCACCGtaacatggacacacacacacgcccacacacacacacaaacacacattcagattCACACAAACGATTAGTCACTCCTCCTCAATGGCTGAAGTTAGGAGGATGAAATTTGACCGGCAAAGGTTTTACATTAGTTAATAGCAGATTATATGGCGGAATAATGATGGCATTTGAGATGATGACGtgtcctgctgaaaaaaaacagtaaatcgAGTGCGTTTGTGTTCAGAAAATGATAGCCAGTGCCAACATTAGCTGGAGAAGTCAAAGTGAGAAAAACATGCTCTTATGAGTAATATAAAAAGGGCATGTAAAGAGactaaacattttgtatttaatattaagtCCAGACGTTGGCTCAGGAGCAAAAGAGTGTCGATGTGCTGCTGCAGATGAAGAATGTGTTAAGCTTGAACAAGGTTGTTTCATTCAGTAGATGGAAGAAGTGCAATGTCATGATTATATTGTATGTAAGCATAAATACACTGTACGGTTTGTcgtatatttatgtgtgtgtgtgtgtgtgtgtgtgagtgagtgtatgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU14196 True 1983 lncRNA 0.48 2 21475423 21523715
TU14201 False 739 lncRNA 0.38 2 21512459 21523715

Neighbor

gene id symbol gene type direction distance location
ccdc12 ccdc12,LOC107743233,LOC107752847,LOC107581540 coding downstream 102729 21361624 ~ 21372694 (-)
slc6a19b slc6a19b,LOC108270036,LOC107743232,LOC107596751,LOC107685553,LOC107662664,LOC105905464 coding downstream 336153 21131082 ~ 21139270 (-)
LOC113542399 LOC108270030,LOC108415428 coding downstream 344476 21120820 ~ 21130947 (-)
si:ch211-254p10.2 LOC108262958,LOC107752844,LOC103366948 coding downstream 357007 21112866 ~ 21118416 (-)
rapgef5b LOC108267288,LOC107596719,LOC107674937,LOC107743169 coding downstream 370090 21056876 ~ 21105333 (-)
mtbp mtbp coding upstream 224506 21748221 ~ 21771707 (-)
col14a1a col14a1 coding upstream 268296 21792011 ~ 21882210 (-)
deptor deptor,LOC107685573 coding upstream 369432 21893147 ~ 21925684 (-)
polr3c polr3c,LOC107673034,LOC107707173,LOC107743190,LOC107685575 coding upstream 484520 22008235 ~ 22019237 (-)
gba gba,LOC107596705,LOC107598447 coding upstream 508753 22032468 ~ 22038626 (-)
G11806 fhod3,LOC107743170,LOC107662660 non-coding downstream 236147 21238035 ~ 21239276 (-)
LOC117597063 NA non-coding downstream 595609 20870795 ~ 20879814 (-)
LOC113542610 NA non-coding downstream 608537 20865805 ~ 20866886 (-)
G11569 NA non-coding downstream 629942 20845265 ~ 20845481 (-)
G11545 NA non-coding downstream 676011 20796750 ~ 20799412 (-)
G12373 NA non-coding upstream 333900 21857615 ~ 21858840 (-)
G12375 crabp2a,LOC108272314,LOC107598461,LOC107596745,LOC108437453,LOC107673000,LOC107685576 non-coding upstream 348561 21872276 ~ 21960299 (-)
G12377 NA non-coding upstream 403744 21927459 ~ 21930143 (-)
LOC113542638 NA non-coding upstream 410968 21934683 ~ 21937785 (-)
G12498 NA non-coding upstream 809410 22333125 ~ 22334604 (-)
rxrbb rxrbb,LOC108267229,LOC108413045,LOC107596638,LOC107581542 other downstream 200082 21263577 ~ 21275341 (-)
G10832 LOC108267614 other downstream 1651740 19816477 ~ 19823683 (-)
trnaq-cug_9 NA other downstream 1728540 19746526 ~ 19746883 (-)
trnaq-uug NA other downstream 1729483 19745650 ~ 19745940 (-)
LOC117597712 NA other downstream 1772263 19702611 ~ 19703160 (-)
aicda aicda other upstream 1162692 22686407 ~ 22691804 (-)
zgc:92606 zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC108266696,LOC107672985,LOC107598403 other upstream 1377636 22901351 ~ 22908140 (-)
LOC113542417 NA other upstream 1596757 23120472 ~ 23129313 (-)
cxcr3.2 LOC108266514 other upstream 1609211 23132926 ~ 23165584 (-)
cicb cic,LOC107582035 other upstream 1953443 23477158 ~ 23527323 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000037_03873766_03874592 NA coding CI01000037 null 3873646 ~ 3874684 (-)